BAC Information

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BAC

Clone NameB6Ng01-044I02
Chromosome11 (Build37)
Map Location 94,015,006 - 94,176,085
singlet/doubletdoublet
Overlap geneLOC100039440, Tob1, Wfikkn2, 3300001P08Rik
Upstream geneCar10, LOC629636, Utp18, Mbtd1, Nme2, Nme1, Spag9, LOC100039431
Downstream geneAnkrd40, Abcc3, Cacna1g, Spata20, Epn3, Mycbpap, Rsad1, BC018371, Chad, Lrrc59, Eme1, Mrpl27, Xylt2, OTTMUSG00000002038, Cdc34-ps, A430060F13Rik, Tmem92, LOC100039410, LOC544807, LOC544808, LOC665174, LOC432591, LOC100039739, Col1a1, Sgca, Hils1, Ppp1r9b, Samd14, Pdk2, Itga3, Dlx3, Dlx4, LOC100039437, Tac4, Myst2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044I02.bB6Ng01-044I02.g
ACCDH870238DH870239
length1,0821,025
definitionDH870238|Mus musculus domesticus DNA, BAC clone: B6Ng01-044I02, 5' end.DH870239|Mus musculus domesticus DNA, BAC clone: B6Ng01-044I02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,015,006 - 94,016,162)(94,175,047 - 94,176,085)
sequence
gaattccaggggaccctaatcctgctggtccctctccttgtaaaccttag
ggttcttgagctggccagcacatccagaaatcctgatgccctgggtagga
gctcagtacagccctcttttttttttttttttggtttttccagacagggt
ttttctgtatagctctggctgtcctggaactcactttgcagaccaggctg
gccttgaactcagaaatccacctgcctctgcctcccgagtactgggacta
aaggcgtgcgccaccacgcccagctaagtacagccctcttaagagagcca
cacaggttattccaaggcgcagagcagcaccgacatcgttagagtagctg
gttagaaatgactgcctgaattagagttcccagggtggggctgagccggg
gttttaacaaccctctgggaggttgagtggctggtaccatttgagcaacc
atctctgacccaggaggtgtgaggctaggaactccagacatctgaccaga
ggtatttcataagagatatccaatttagacactctttgaaagaaaaatta
aaaatcttactcattaattataaagtgtcaagaaccaaacagatacaagc
tgggtcgctttctcttgttcagttggaaaccctctctccctgagtccaga
gttgtgaaacctactactaccaccccactcatttttttgggacaaggtca
cagtgtccttcccctccccacaggcacatgctcggcccccctgtgttgcc
caggctggcctgatttcctaggctcaagtgttcccctgatctgagaatgc
aactgtgaccaccatgctcagtttcccccgtttctcctttattttatttt
attttattttattttatttcatttcctcttcttcctctcctctctcttgg
tcttttgagacaggattttgctatgtaagcctagctagcttggaactcat
tgtgtagctcaagctgacccaaagcccattgcagttcctcctgtctccat
gcttggattaacagctgtacctcttccacaccccagttatagacttcatt
ttaatttttaagaatgtttatttaatttttag
gaattcctatgttcctttctacagacagaaatacatttcacttaacacaa
atagcagaattgtgtgtgtgcaacacccagccctagagaactatcagtgt
agtgggtgacaaataggaattgttaagtgtacttcagtgacacaataaga
atactacaatgacaaaaaccagaaggtgcaaagagcctggagcataaagt
ggcctttaagtcctggaacctaatggattggtaagaattagcctgaggaa
gggctaaaaatggcaggctgaagaaatgagtgcagttgggaaattttttt
tacaactgaagcccttgtttagatatctttggtggggagtgagataagca
agagttaacttcattacattggtaaacagttgaaggtttttaagcagtgg
atgtgttcactgcctggctgctgtggaagagtgattgaaattttatcatt
caaactatgtgaacagtaagaaacgtgtgagccgtgaccagcaaaggagt
ctatgacacagtgagagacacagactggttacttgaaagtatgatcatgg
tatagctggagcaaaaccatagcttgaaaactgactcttacacacccttt
ccaaaactgtctttgagacatttcttctgccttttttcccccctcttttt
tccttatataaattcctgtatctaaaaaaaaaaattaactaggcttggtg
gcacaaccctcagatcccagtactcaaaaggccaaggcaggaagaactca
aattctagggttgctggatgagactgttaaaacttatttggttctaggct
ggatatagctaaagttttatgatagaaaaaaaaaaaaccgactaaaaatt
tctggcgattctggattttaaattgatacatgtacagcagttgaagtctt
ttgttatgttttgtttgttttgtttgagacagggctctctgggtagccct
gatgtctgaactccactcatatacagcttgcctcgatctctgaattcacc
tgctctgcctccagactaggattaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_94015006_94016162
seq2: B6Ng01-044I02.b_42_1123

seq1  GAATTCCAGGGGACCCTAATCCTGCTGGTCCCTCTCCTTGTAAACCTTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGGACCCTAATCCTGCTGGTCCCTCTCCTTGTAAACCTTAG  50

seq1  GGTTCTTGAGCTGGCCAGCACATCCAGAAATCCTGATGCCCTGGGTAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTTGAGCTGGCCAGCACATCCAGAAATCCTGATGCCCTGGGTAGGA  100

seq1  GCTCAGTACAGCCCTCTTTTTTTTTTTTTTTTGGTTTTTCCAGACAGGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTACAGCCCTCTTTTTTTTTTTTTTTTGGTTTTTCCAGACAGGGT  150

seq1  TTTTCTGTATAGCTCTGGCTGTCCTGGAACTCACTTTGCAGACCAGGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGTATAGCTCTGGCTGTCCTGGAACTCACTTTGCAGACCAGGCTG  200

seq1  GCCTTGAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTACTGGGACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTACTGGGACTA  250

seq1  AAGGCGTGCGCCACCACGCCCAGCTAAGTACAGCCCTCTTAAGAGAGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCGTGCGCCACCACGCCCAGCTAAGTACAGCCCTCTTAAGAGAGCCA  300

seq1  CACAGGTTATTCCAAGGCGCAGAGCAGCACCGACATCGTTAGAGTAGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGTTATTCCAAGGCGCAGAGCAGCACCGACATCGTTAGAGTAGCTG  350

seq1  GTTAGAAATGACTGCCTGAATTAGAGTTCCCAGGGTGGGGCTGAGCCGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAAATGACTGCCTGAATTAGAGTTCCCAGGGTGGGGCTGAGCCGGG  400

seq1  GTTTTAACAACCCTCTGGGAGGTTGAGTGGCTGGTACCATTTGAGCAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAACAACCCTCTGGGAGGTTGAGTGGCTGGTACCATTTGAGCAACC  450

seq1  ATCTCTGACCCAGGAGGTGTGAGGCTAGGAACTCCAGACATCTGACCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGACCCAGGAGGTGTGAGGCTAGGAACTCCAGACATCTGACCAGA  500

seq1  GGTATTTCATAAGAGATATCCAATTTAGACACTCTTTGAAAGAAAAATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTTCATAAGAGATATCCAATTTAGACACTCTTTGAAAGAAAAATTA  550

seq1  AAAATCTTACTCATTAATTATAAAGTGTCAAGAACCAAACAGATACAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTTACTCATTAATTATAAAGTGTCAAGAACCAAACAGATACAAGC  600

seq1  TGGGTCGCTTTCTCTTGTTCAGTTGGAAACCCTCTCTCCCTGAGTCCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCGCTTTCTCTTGTTCAGTTGGAAACCCTCTCTCCCTGAGTCCAGA  650

seq1  GTTGTGAAACCTACTACTACCACCCCACTCATTTTTTTGGGACAAGGTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGAAACCTACTACTACCACCCCACTCATTTTTTTGGGACAAGGTCA  700

seq1  CAGTGTCCTTCCCCTCCCCACAGGCACATGCTCGGCCCCCCTGTGTTGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCCTTCCCCTCCCCACAGGCACATGCTCGGCCCCCCTGTGTTGCC  750

seq1  CAGGCTGGCCTGATTTCCTAGGCTCAAGTGTTCCCCTGATCTGAGAATGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGGCCTGATTTCCTAGGCTCAAGTGTTCCCCTGATCTGAGAATGC  800

seq1  AACTGTGACCACCATGCTCAGTTTCCCCCGTTTCTCCTTTATTTTATTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTGACCACCATGCTCAGTTTCCCCCGTTTCTCCTTTATTTTATTTT  850

seq1  ATTTTATTTTATTTTATTTCATTTCCTCTTCTTCCTCTCCTTCTCTCCTT  900
      |||||||||||||||||||||||||||||||||||||||| ||||| |||
seq2  ATTTTATTTTATTTTATTTCATTTCCTCTTCTTCCTCTCC-TCTCT-CTT  898

seq1  GGTCTTTTGAGACAGGATTTTGCTATGTAGGCCTAGCTAGCTTGGAACTC  950
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GGTCTTTTGAGACAGGATTTTGCTATGTAAGCCTAGCTAGCTTGGAACTC  948

seq1  ATTGTGTAGCTCAGGCTGACCCAAAGCCCATTGCAG-TCCTCCTGTCTCA  999
      ||||||||||||| |||||||||||||||||||||| |||||||||||| 
seq2  ATTGTGTAGCTCAAGCTGACCCAAAGCCCATTGCAGTTCCTCCTGTCTCC  998

seq1  ATGCTGGGATT-ACAGCTGTACCTC-TCCACACCCAGGTTTTAGACTCTC  1047
      ||||| ||||| ||||||||||||| |||||||||  ||| |||||| ||
seq2  ATGCTTGGATTAACAGCTGTACCTCTTCCACACCCCAGTTATAGACT-TC  1047

seq1  ATTTTATTTTTAAAGATTTGTTTATTTA--TTTTATGTACGTGAGTACAC  1095
      |||||| |||| ||||  ||||||||||  |||||               
seq2  ATTTTAATTTTTAAGA-ATGTTTATTTAATTTTTAG--------------  1082

seq1  AACACTGTAGTTGTACAGATGGTTGTGAACCTTCATGTGGTTGTTGGGAA  1145
                                                        
seq2  --------------------------------------------------  1082

seq1  TTGAATTTTTAG  1157
                  
seq2  ------------  1082

seq1: chr11_94175047_94176085
seq2: B6Ng01-044I02.g_67_1091 (reverse)

seq1  TTAATCCTAGCTCTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGG  50
      |||||||||| |||  ||||||||| |||||| || ||| ||| ||||||
seq2  TTAATCCTAG-TCT--GGAGGCAGA-GCAGGT-GAATTCAGAGATCGAGG  45

seq1  CCAGCCTGGTCTACTGAGT-GAGTTCCAGGACATCCAGGGCTACCCAGAG  99
      | |||   || || ||||| ||||||   ||||| |||||||||||||||
seq2  CAAGC--TGTATA-TGAGTGGAGTTC--AGACAT-CAGGGCTACCCAGAG  89

seq1  AAGCCCTGTCTCAAAACAAAACAAAACAAAACATAACAAAAAGACTTCAA  149
       ||||||||||| ||||||||| |||||||||||||| ||||||||||||
seq2  -AGCCCTGTCTC-AAACAAAAC-AAACAAAACATAAC-AAAAGACTTCAA  135

seq1  CTGCTGTACATGTATCAATTTAAAATCCAGAATCGCCAGAAATTTTTAGT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGTACATGTATCAATTTAAAATCCAGAATCGCCAGAAATTTTTAGT  185

seq1  CGGTTTTTTTTTTTTCTATCATAAAACTTTAGCTATATCCAGCCTAGAAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTTTTTTTTTTTCTATCATAAAACTTTAGCTATATCCAGCCTAGAAC  235

seq1  CAAATAAGTTTTAACAGTCTCATCCAGCAACCCTAGAATTTGAGTTCTTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAAGTTTTAACAGTCTCATCCAGCAACCCTAGAATTTGAGTTCTTC  285

seq1  CTGCCTTGGCCTTTTGAGTACTGGGATCTGAGGGTTGTGCCACCAAGCCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTGGCCTTTTGAGTACTGGGATCTGAGGGTTGTGCCACCAAGCCT  335

seq1  AGTTAATTTTTTTTTTTAGATACAGGAATTTATATAAGGAAAAAAGAGGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAATTTTTTTTTTTAGATACAGGAATTTATATAAGGAAAAAAGAGGG  385

seq1  GGGAAAAAAGGCAGAAGAAATGTCTCAAAGACAGTTTTGGAAAGGGTGTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAAAAGGCAGAAGAAATGTCTCAAAGACAGTTTTGGAAAGGGTGTG  435

seq1  TAAGAGTCAGTTTTCAAGCTATGGTTTTGCTCCAGCTATACCATGATCAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGTCAGTTTTCAAGCTATGGTTTTGCTCCAGCTATACCATGATCAT  485

seq1  ACTTTCAAGTAACCAGTCTGTGTCTCTCACTGTGTCATAGACTCCTTTGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCAAGTAACCAGTCTGTGTCTCTCACTGTGTCATAGACTCCTTTGC  535

seq1  TGGTCACGGCTCACACGTTTCTTACTGTTCACATAGTTTGAATGATAAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCACGGCTCACACGTTTCTTACTGTTCACATAGTTTGAATGATAAAA  585

seq1  TTTCAATCACTCTTCCACAGCAGCCAGGCAGTGAACACATCCACTGCTTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATCACTCTTCCACAGCAGCCAGGCAGTGAACACATCCACTGCTTA  635

seq1  AAAACCTTCAACTGTTTACCAATGTAATGAAGTTAACTCTTGCTTATCTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTTCAACTGTTTACCAATGTAATGAAGTTAACTCTTGCTTATCTC  685

seq1  ACTCCCCACCAAAGATATCTAAACAAGGGCTTCAGTTGTAAAAAAAATTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCCACCAAAGATATCTAAACAAGGGCTTCAGTTGTAAAAAAAATTT  735

seq1  CCCAACTGCACTCATTTCTTCAGCCTGCCATTTTTAGCCCTTCCTCAGGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACTGCACTCATTTCTTCAGCCTGCCATTTTTAGCCCTTCCTCAGGC  785

seq1  TAATTCTTACCAATCCATTAGGTTCCAGGACTTAAAGGCCACTTTATGCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCTTACCAATCCATTAGGTTCCAGGACTTAAAGGCCACTTTATGCT  835

seq1  CCAGGCTCTTTGCACCTTCTGGTTTTTGTCATTGTAGTATTCTTATTGTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTCTTTGCACCTTCTGGTTTTTGTCATTGTAGTATTCTTATTGTG  885

seq1  TCACTGAAGTACACTTAACAATTCCTATTTGTCACCCACTACACTGATAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGAAGTACACTTAACAATTCCTATTTGTCACCCACTACACTGATAG  935

seq1  TTCTCTAGGGCTGGGTGTTGCACACACACAATTCTGCTATTTGTGTTAAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTAGGGCTGGGTGTTGCACACACACAATTCTGCTATTTGTGTTAAG  985

seq1  TGAAATGTATTTCTGTCTGTAGAAAGGAACATAGGAATTC  1039
      ||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGTATTTCTGTCTGTAGAAAGGAACATAGGAATTC  1025