BAC Information

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BAC

Clone NameB6Ng01-044J05
Chromosome11 (Build37)
Map Location 44,937,504 - 45,116,024
singlet/doubletdoublet
Overlap geneLOC382510
Upstream geneIl12b, Ublcp1, 3732413I11Rik, Ebf1
Downstream geneLOC633082, Clint1, Lsm11, Thg1l, Sox30, LOC667037, LOC100039624, Adam19, 9530066K23Rik, Cyfip2, C030019I05Rik, LOC100038833
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044J05.bB6Ng01-044J05.g
ACCDH870290DH870291
length1,1211,029
definitionDH870290|Mus musculus domesticus DNA, BAC clone: B6Ng01-044J05, 5' end.DH870291|Mus musculus domesticus DNA, BAC clone: B6Ng01-044J05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,114,890 - 45,116,024)(44,937,504 - 44,938,538)
sequence
gaattccaggaaatctttctatattctcaataataattgcctttgaaatg
tgtggtctaaaaatattgtatttcatcttgtgaattcctttttcacttta
cattgacccacatcattttaaattgttgattaaatctaatttatcatgtt
ttatttcttttgggggttgtgatggcattggcttcatgttcaagaaacct
ttgccagctccaatttcagaaagattattatttcttcatttttcccaagt
gtttttattttagagtttaaattcttgtgtttagatattactttcatttt
gagttaattttcatataaggtataaaataagtttttatgcacatgggtct
tcatttttaccattatcatttgctaaaaatggccatgttttcccctttta
aaagatgattttgcttgttcaaaaaaatgaaataaccacctacgtagaga
attattatttcaatagcataaaaatattttgtagggtctagtacattaga
agctataacaaaatacaaagaggccaacaaatacaactgctcttaattga
gtacctagttgaatgtttaggtggtttcctgcccttcttctctatccttt
taattctcaacaaaatcctcatagtaattgagaccattcatcaagtggga
ataaaggggacacaaatagaatagagtgagcagtgtctacagtacaactc
cattgttgtgctcgtgtaatgaaactcagagcatgctatgcattcatttt
cactcagcattagtatctggatctctttctgtggtaacacactacactgg
tttaaataagacatccctcgtggtctcaggtgttgaatacttgatcccca
gttagtgatgcctttgcgaggtttaggaggtgtggtcctgttagaggaaa
aactctgtcaccctttgcgagtctaaacttgcctcactttgagtctctct
gtctctctctgtctctctctgtctctgtctgtctgctgtctgctgtcagt
ctgtctctcgactttttccccgcttctgctgcagtcaaaatgtgagctct
tactgctgctccagtggcatgctgcctacattttgcttctcaatcctgat
ggggatggattcttattcctt
gaattcaaagacatcaactttatttagggcaaagcaaggctatcccacaa
ctccctaaggatggaggcaggagatagtggtagacaggcctggggcttgg
ggacactggtataaccagaaaaagcacacaaagaactaactaaagtgttt
agactttcctcgtctccgcctttgcttctcctggcctctaacgacagggc
tggaccaggaaaagtgagctgtatttgggtactgcttttagagacccagc
agggtctttcgtgaggaattatttggaggctgtgggagaaggctgctggc
tctgaacctgagaggagtaagatgcggtgagaggaaaggtatggttgtgg
tccagatacttgtgaaacatactcttccactgagatcatccagcagccag
ataccagcccagatacccctagtgactgatgactattttattttcagtat
tgtggttggagagttaaatatgagacctctcccttgagtaaaattttaag
tgcataacatagcagtgtggtccaccagacctctcaaacatgactatcct
ttgtagttagaatgttatacccagcaactccacaatgacagaatcgtccc
attcctttcttctcccaacccttggaggccatcattgccctgatacttca
tgcaagtaaaatcatgtaagtgttcgtctttccatagctagatagctcct
atggtttcaatatgtgtccttcacatcatatggaattctaacctctgctt
tggtgacataggacaaaaagccgattggaaaatgatgaaaccataggtgt
ttatccatgagtgaaatgccttgttgtgaaagagttggagggactaactt
gggcacattttgctctgctttctgtagccgtgtgatgacacagagctctt
gggactgtcttgaagcagacagcattctcactatgccatgatgatctttg
atttcctttattgagatgattgtcaactgatgagcagctcatactgctgc
ataaatagatggagtgatttactctactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_45114890_45116024
seq2: B6Ng01-044J05.b_44_1164 (reverse)

seq1  AAGGAATAAGAATCCATCACCATCAGGACTGAGAAGCAAAATAGTAGGCA  50
      |||||||||||||||||| ||||||||| ||||||||||||| |||||||
seq2  AAGGAATAAGAATCCATCCCCATCAGGATTGAGAAGCAAAAT-GTAGGCA  49

seq1  GGCATGCCAACTGGAGCAGCAAGTAAGAGCTCACATTTTGAACTGCAAGC  100
       ||||||| ||||||||||| ||||||||||||||||||| ||||| |||
seq2  -GCATGCC-ACTGGAGCAGC-AGTAAGAGCTCACATTTTG-ACTGC-AGC  94

seq1  AGAAAGCAGAGAAAAAAAGACAGAGAGACAGACAGACAGACAGACAGACA  150
      || |||| | |  |||||| | ||||||||||| ||||| ||||||| ||
seq2  AG-AAGCGGGG--AAAAAGTC-GAGAGACAGACTGACAG-CAGACAG-CA  138

seq1  GACAGACAGAGACAGAGAGAGACAGAGAGAGACAGAGAGAACTCAAAGTG  200
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GACAGACAGAGACAGAGAGAGACAGAGAGAGACAGAGAG-ACTCAAAGTG  187

seq1  AGGCAAGTTTTAGACTCGCAAAGGGTGACAGAGTTTTTCCTCTAACAGGA  250
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAG-TTTAGACTCGCAAAGGGTGACAGAGTTTTTCCTCTAACAGGA  236

seq1  CCACACCTCCTAAACCTCGCAAAGGCATCACTAACTGGGGATCAAGTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACCTCCTAAACCTCGCAAAGGCATCACTAACTGGGGATCAAGTATT  286

seq1  CAACACCTGAGACCACGAGGGATGTCTTATTTAAACCAGTGTAGTGTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACCTGAGACCACGAGGGATGTCTTATTTAAACCAGTGTAGTGTGTT  336

seq1  ACCACAGAAAGAGATCCAGATACTAATGCTGAGTGAAAATGAATGCATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAGAAAGAGATCCAGATACTAATGCTGAGTGAAAATGAATGCATAG  386

seq1  CATGCTCTGAGTTTCATTACACGAGCACAACAATGGAGTTGTACTGTAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTCTGAGTTTCATTACACGAGCACAACAATGGAGTTGTACTGTAGA  436

seq1  CACTGCTCACTCTATTCTATTTGTGTCCCCTTTATTCCCACTTGATGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCTCACTCTATTCTATTTGTGTCCCCTTTATTCCCACTTGATGAAT  486

seq1  GGTCTCAATTACTATGAGGATTTTGTTGAGAATTAAAAGGATAGAGAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCAATTACTATGAGGATTTTGTTGAGAATTAAAAGGATAGAGAAGA  536

seq1  AGGGCAGGAAACCACCTAAACATTCAACTAGGTACTCAATTAAGAGCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAGGAAACCACCTAAACATTCAACTAGGTACTCAATTAAGAGCAGT  586

seq1  TGTATTTGTTGGCCTCTTTGTATTTTGTTATAGCTTCTAATGTACTAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTGTTGGCCTCTTTGTATTTTGTTATAGCTTCTAATGTACTAGAC  636

seq1  CCTACAAAATATTTTTATGCTATTGAAATAATAATTCTCTACGTAGGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACAAAATATTTTTATGCTATTGAAATAATAATTCTCTACGTAGGTGG  686

seq1  TTATTTCATTTTTTTGAACAAGCAAAATCATCTTTTAAAAGGGGAAAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCATTTTTTTGAACAAGCAAAATCATCTTTTAAAAGGGGAAAACA  736

seq1  TGGCCATTTTTAGCAAATGATAATGGTAAAAATGAAGACCCATGTGCATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCATTTTTAGCAAATGATAATGGTAAAAATGAAGACCCATGTGCATA  786

seq1  AAAACTTATTTTATACCTTATATGAAAATTAACTCAAAATGAAAGTAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTATTTTATACCTTATATGAAAATTAACTCAAAATGAAAGTAATA  836

seq1  TCTAAACACAAGAATTTAAACTCTAAAATAAAAACACTTGGGAAAAATGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAACACAAGAATTTAAACTCTAAAATAAAAACACTTGGGAAAAATGA  886

seq1  AGAAATAATAATCTTTCTGAAATTGGAGCTGGCAAAGGTTTCTTGAACAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAATAATCTTTCTGAAATTGGAGCTGGCAAAGGTTTCTTGAACAT  936

seq1  GAAGCCAATGCCATCACAACCCCCAAAAGAAATAAAACATGATAAATTAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCAATGCCATCACAACCCCCAAAAGAAATAAAACATGATAAATTAG  986

seq1  ATTTAATCAACAATTTAAAATGATGTGGGTCAATGTAAAGTGAAAAAGGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATCAACAATTTAAAATGATGTGGGTCAATGTAAAGTGAAAAAGGA  1036

seq1  ATTCACAAGATGAAATACAATATTTTTAGACCACACATTTCAAAGGCAAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACAAGATGAAATACAATATTTTTAGACCACACATTTCAAAGGCAAT  1086

seq1  TATTATTGAGAATATAGAAAGATTTCCTGGAATTC  1135
      |||||||||||||||||||||||||||||||||||
seq2  TATTATTGAGAATATAGAAAGATTTCCTGGAATTC  1121

seq1: chr11_44937504_44938538
seq2: B6Ng01-044J05.g_66_1094

seq1  GAATTCAAAGACATCAACTTTATTTAGGGCAAAGCAAGGCTATCCCACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGACATCAACTTTATTTAGGGCAAAGCAAGGCTATCCCACAA  50

seq1  CTCCCTAAGGATGGAGGCAGGAGATAGTGGTAGACAGGCCTGGGGCTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTAAGGATGGAGGCAGGAGATAGTGGTAGACAGGCCTGGGGCTTGG  100

seq1  GGACACTGGTATAACCAGAAAAAGCACACAAAGAACTAACTAAAGTGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACTGGTATAACCAGAAAAAGCACACAAAGAACTAACTAAAGTGTTT  150

seq1  AGACTTTCCTCGTCTCCGCCTTTGCTTCTCCTGGCCTCTAACGACAGGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTTCCTCGTCTCCGCCTTTGCTTCTCCTGGCCTCTAACGACAGGGC  200

seq1  TGGACCAGGAAAAGTGAGCTGTATTTGGGTACTGCTTTTAGAGACCCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCAGGAAAAGTGAGCTGTATTTGGGTACTGCTTTTAGAGACCCAGC  250

seq1  AGGGTCTTTCGTGAGGAATTATTTGGAGGCTGTGGGAGAAGGCTGCTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCTTTCGTGAGGAATTATTTGGAGGCTGTGGGAGAAGGCTGCTGGC  300

seq1  TCTGAACCTGAGAGGAGTAAGATGCGGTGAGAGGAAAGGTATGGTTGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAACCTGAGAGGAGTAAGATGCGGTGAGAGGAAAGGTATGGTTGTGG  350

seq1  TCCAGATACTTGTGAAACATACTCTTCCACTGAGATCATCCAGCAGCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGATACTTGTGAAACATACTCTTCCACTGAGATCATCCAGCAGCCAG  400

seq1  ATACCAGCCCAGATACCCCTAGTGACTGATGACTATTTTATTTTCAGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAGCCCAGATACCCCTAGTGACTGATGACTATTTTATTTTCAGTAT  450

seq1  TGTGGTTGGAGAGTTAAATATGAGACCTCTCCCTTGAGTAAAATTTTAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTGGAGAGTTAAATATGAGACCTCTCCCTTGAGTAAAATTTTAAG  500

seq1  TGCATAACATAGCAGTGTGGTCCACCAGACCTCTCAAACATGACTATCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAACATAGCAGTGTGGTCCACCAGACCTCTCAAACATGACTATCCT  550

seq1  TTGTAGTTAGAATGTTATACCCAGCAACTCCACAATGACAGAATCGTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGTTAGAATGTTATACCCAGCAACTCCACAATGACAGAATCGTCCC  600

seq1  ATTCCTTTCTTCTCCCAACCCTTGGAGGCCATCATTGCCCTGATACTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTTCTTCTCCCAACCCTTGGAGGCCATCATTGCCCTGATACTTCA  650

seq1  TGCAAGTAAAATCATGTAAGTGTTCGTCTTTCCATAGCTAGATAGCTCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGTAAAATCATGTAAGTGTTCGTCTTTCCATAGCTAGATAGCTCCT  700

seq1  ATGGTTTCAATATGTGTCCTTCACATCATATGGAATTCTAACCTCTGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTCAATATGTGTCCTTCACATCATATGGAATTCTAACCTCTGCTT  750

seq1  TGGTGACATAGGACAAAAAGCCGATTGGAAAATGATGAAACCATAGGTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGACATAGGACAAAAAGCCGATTGGAAAATGATGAAACCATAGGTGT  800

seq1  TTATCCATGAGTGAAATGCCTTGTTGTGAAAAGAGTTGGAGGGACTAACT  850
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTATCCATGAGTGAAATGCCTTGTTGTG-AAAGAGTTGGAGGGACTAACT  849

seq1  TGGGCACATTTTGCTCTGCTTTCTGTAGCCGTGTGATGACACAGAGCTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCACATTTTGCTCTGCTTTCTGTAGCCGTGTGATGACACAGAGCTCT  899

seq1  TGGGACTGTCTTGAAGCAGACAGCATTCTCCACTATGCCATGATGATCTT  950
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGGGACTGTCTTGAAGCAGACAGCATTCT-CACTATGCCATGATGATCTT  948

seq1  TGATTTTCCTTTATTGAGAATGAATTGTCAACTGATGAGCAGCTCATTAC  1000
      ||| |||||||||||||| ||| ||||||||||||||||||||||| |||
seq2  TGA-TTTCCTTTATTGAG-ATG-ATTGTCAACTGATGAGCAGCTCA-TAC  994

seq1  TGCTGCATAAATAGATGGAGTGATTTACTCTACTT  1035
      |||||||||||||||||||||||||||||||||||
seq2  TGCTGCATAAATAGATGGAGTGATTTACTCTACTT  1029