BAC Information

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BAC

Clone NameB6Ng01-044J17
Chromosome11 (Build37)
Map Location 58,685,603 - 58,686,297
singlet/doubletsinglet
Overlap gene2810021J22Rik
Upstream geneLOC624605, Larp1, LOC676527, LOC667947, Cnot8, Gemin5, Mrpl22, Irgb10, Igtp, LOC263305, LOC100041816, EG668249, 4930438A08Rik, Zfp692, Zfp672, 1700047K16Rik, Sh3bp5l, 2210415F13Rik, LOC624814, 1810065E05Rik, OTTMUSG00000005737, 4930504O13Rik, Olfr30, Olfr333-ps1, Olfr332, Olfr331, Olfr330, Olfr329, Olfr328, Olfr327-ps1, Olfr325, Olfr324, 2210407C18Rik, Olfr323, Trim58, Olfr216, OTTMUSG00000005755, Olfr320, LOC668058, Olfr319, Olfr318, Olfr317, Olfr316, Olfr315, Olfr314, 3100002J23Rik, Olfr313, Olfr312, GA_x5J8B7W3UM0-1747565-1747342, Olfr311
Downstream geneZfp39, Butr1, Rnf187, LOC676691, Hist3h2ba, Hist3h2bb, Hist3h2a, LOC382523, Trim17, Trim11, Obscn, A230051G13Rik, 4930543L23Rik, Gja12, Guk1, Mrpl55, 2310033P09Rik, Arf1, Wnt3a, Wnt9a, Gm249, 1110031B06Rik, Jmjd4, BC050078, LOC432565, Zkscan17, Nlrp3, Olfr222, LOC668157, Olfr223, GA_x5J8B7W3UM0-970645-971221, Olfr225, AA536749, 4933433K01Rik, Flcn, Cops3, Nt5m
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044J17.bB6Ng01-044J17.g
ACCDH870312DH870313
length1,008568
definitionDH870312|Mus musculus domesticus DNA, BAC clone: B6Ng01-044J17, 5' end.DH870313|Mus musculus domesticus DNA, BAC clone: B6Ng01-044J17, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctacataagtcttggtaaactgatgagtttgttgggattagaagt
ataggtgagggattacttacagacacacggataagtcaaaggcacctgtt
tcactctatggtccaccccagcatgggtgacaaatcttgaaaattacatc
cctggagcatgtcacccattccacacacttgtaagcagctctgtgggttg
acttagtaatgactactacttatataacattactttctgagctttgtaaa
ttttgttcacttcctgtgtctttatgggtgtccctcattaaaggcatgat
tcagtttggaagacatagccatatagtatcccaccccttcctctggttct
tacatcctcttgactccctttttggatgttccctgagtcttggaagggat
ggtataggcacctgatcattttcttccatccatggctgaggatagcagag
aaacagttatttggtttcagacgctagtggaatatggttctctatagcac
atccctcactggaaaaaaaatcatttggaaaaaaataagttttcctgtat
gactgaccaaagccagtggcagctgcaagtgatgcgtgtatatgtaaatg
tttagaaggcgatttgacaagaacgtcacagccagagaacaaaataatag
ttgcctccccttgggaccacaggctcttgcccttccttgctccaccgtat
gggaatccccttccctggagcagactttcaaatctataggaaagtagatg
gctgtccccattacagtcacgccacaatttgtaccaacaagcacatcttg
cttgacatattagtatcgtacacacagagccattcagagctgatgaggac
tgttcatgacacttcttcaccagtggttcccagaggggacttgctggcac
ttagtcagcacagagggacagcgtcagcaacaggaactttatttagcctt
gatacacaacagtgacagcagcctctatggtttgtaaggccggggtgggg
gtggggtc
agaaatgtcactgcactcgtggttagtgtttatgcttggggagggtttca
caatagttaatgaggtcccagtgcccttgtagaaactcctgctgtcttct
gtcagtggcccgtgatgtcacacaacagtacggagagttgccacaaacgg
ttggcaagcagtgaatctcctcctaaccaatatgtttagtcttccttggg
attcagtacataggtgttattgaccaccttgattgcccttagtctcctgc
ctagcaagtatcagttcaagtcgatagtgcctggtcctagtctgtcctga
caaatgcctgctaccatcataagcctagggacagtccacaaggcctgaag
gtaaggagagattcatgctcccctagagagctccctactgcgtacttgaa
aacatttctaaattctctccagtgcccagtgcgttgtaagtgctgtgtaa
atcatccttacccaacagaggaagaaagccatctgtgtctgtcctgacca
gacagccactttccttgagtgttttatttgcagtgtttgagcgcgtgttt
gcaataaggcagatgctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_58685603_58686297
seq2: B6Ng01-044J17.g_68_641

seq1  GAATTCAGAAATGTCACTGCACTCGTGGTTAGTGTTTATGCTTGGGGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAATGTCACTGCACTCGTGGTTAGTGTTTATGCTTGGGGAGG  50

seq1  GTTTCACAATAGTTAATGAGGTCCCAGTGCCCTTGTAGAAACTCCTGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCACAATAGTTAATGAGGTCCCAGTGCCCTTGTAGAAACTCCTGCTG  100

seq1  TCTTCTGTCAGTGGCCCGTGATGTCACACAACAGTACGGAGAGTTGCCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGTCAGTGGCCCGTGATGTCACACAACAGTACGGAGAGTTGCCAC  150

seq1  AAACGGTTGGCAAGCAGTGAATCTCCTCCTAACCAATATGTTTAGTCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGGTTGGCAAGCAGTGAATCTCCTCCTAACCAATATGTTTAGTCTTC  200

seq1  CTTGGGATTCAGTACATAGGTGTTATTGACCACCTTGATTGCCCTTAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGATTCAGTACATAGGTGTTATTGACCACCTTGATTGCCCTTAGTC  250

seq1  TCCTGCCTAGCAAGTATCAGTTCAAGTCGATAGTGCCTGGTCCTAGTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCTAGCAAGTATCAGTTCAAGTCGATAGTGCCTGGTCCTAGTCTG  300

seq1  TCCTGACAAATGCCTGCTACCATCATAAGCCTAGGGACAGTCCACAAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGACAAATGCCTGCTACCATCATAAGCCTAGGGACAGTCCACAAGGC  350

seq1  CTGAAGGTAAGGAGAGATTCATGCTCCCCTAGAGAGCTCCCTACTGCGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGGTAAGGAGAGATTCATGCTCCCCTAGAGAGCTCCCTACTGCGTA  400

seq1  CTTGAAAACATTTCTAAATTCTCTCCAGTGCCCAGTGCGTTGTAAGTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAAACATTTCTAAATTCTCTCCAGTGCCCAGTGCGTTGTAAGTGCT  450

seq1  GTGTAAATCATCCTTACCCAACAGAGGAAGAAAGCCATCTGTGTCTGTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAAATCATCCTTACCCAACAGAGGAAGAAAGCCATCTGTGTCTGTCC  500

seq1  TGACCAGACAGCCACTTTCCATGAGTGTTTTTAGTTTGCAGTGTTTGAGC  550
      |||||||||||||||||||| ||||||||||   ||||||||||||||||
seq2  TGACCAGACAGCCACTTTCCTTGAGTGTTTT--ATTTGCAGTGTTTGAGC  548

seq1  GCGTGGTTGCAATAAGGCAGAGGCTGTGAAGAGCAAGGGCCGTGTGTGCA  600
      ||||| ||||||||||||||| ||||                        
seq2  GCGTGTTTGCAATAAGGCAGATGCTG------------------------  574

seq1  TCATCCCTTGCTCCTGCTTCCCCGGGTGTTGAGTCTAGCCATTTGATAAT  650
                                                        
seq2  --------------------------------------------------  574

seq1  ACATCTCTTATAATCGCTGTTTGGGGGTGAGGCTTCACATTGCTG  695
                                                   
seq2  ---------------------------------------------  574