BAC Information

Click to search

BAC

Clone NameB6Ng01-044O20
Chromosome11 (Build37)
Map Location 34,239,350 - 34,344,590
singlet/doubletdoublet
Overlap geneDock2, EG574403
Upstream geneRanbp17, Anp32c, LOC669306, LOC666269, Gabrp, D130052B06Rik, Kcnip1, Kcnmb1, Lcp2, Foxi1
Downstream geneDock2, Ccdc99, LOC100038976, Slit3, LOC100039006
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044O20.bB6Ng01-044O20.g
ACCDH870537DH870538
length252889
definitionDH870537|Mus musculus domesticus DNA, BAC clone: B6Ng01-044O20, 5' end.DH870538|Mus musculus domesticus DNA, BAC clone: B6Ng01-044O20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,344,339 - 34,344,590)(34,239,350 - 34,240,252)
sequence
gaattctctttcttctagtggtcaattattgtgaaacttttcagtgaacc
acagcacatacatttttttccctttaatatcatatatttccctctttctc
cttctcagacttcagtgttaacactttcatgcactttcccagaatttttg
atttaaagtgatagatagatagatagatagatagatagatgatagataga
tagatagatagatagatgatagatagatagatagatagatagatagacag
at
gaattcctctctctgtgtggacagacacagagggacacattagagaaatg
ataactctcaccagagatgctatgactcctcgagcaaggcttagcagata
ctcctgtgatagggacaagtggtggggtacttcctgcccctcccatcacg
ccctgacccttggctgggtttctttctgggacacaccagttatgcctact
tctacagggagataaattgacatgctacgttctcagccatgggaagtatt
atcagagagggaatctgcctgaagagtagcacgagtctgacttgatgctg
tttctctggcttttgctaaagaagaatcatgattgcagttatccagaaat
cagagctgggcaatcagctgagtgactgggggacagcacagtgctatctt
gatgtatgcctgcccaaagccagcagaacatttgtaagtagcgactcact
aaactgtcaagtgaagaacttagcagaaggagaatggagcctccccctga
gagctgtgtgaagacatgttgacaagggcaagttcttacttgcaaagatg
agagaattctagaaccctggggcttctccccagccccagcctcagccctg
ttctgttttcatagccgccgctcgtgacaaagaagcgcttctgtctctga
gagagcagtagaaactcctggggttcagtactttggctgcaaggctcttg
cttctgcatgctaccagcctgtgtagatggactcagcagctacattgtcc
cagagaagatggctggcagatggtcagactaacccagccagtgcagctgg
gaagcaggaaactgggaagccatgagctcatgctttgtgtgatctggcaa
tccatatttttttttgtctggattcatgtgggaatgata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_34344339_34344590
seq2: B6Ng01-044O20.b_44_295 (reverse)

seq1  ATCTATCTATCTATCTATCTATCTATCTATCTATCATCTATCTATCTATC  50
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTCTATCTATCTATCTATCTATCTATCTATCATCTATCTATCTATC  50

seq1  TATCTATCTATCATCTATCTATCTATCTATCTATCTATCTATCACTTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATCTATCATCTATCTATCTATCTATCTATCTATCTATCACTTTAA  100

seq1  ATCAAAAATTCTGGGAAAGTGCATGAAAGTGTTAACACTGAAGTCTGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAAATTCTGGGAAAGTGCATGAAAGTGTTAACACTGAAGTCTGAGA  150

seq1  AGGAGAAAGAGGGAAATATATGATATTAAAGGGAAAAAAATGTATGTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAAAGAGGGAAATATATGATATTAAAGGGAAAAAAATGTATGTGCT  200

seq1  GTGGTTCACTGAAAAGTTTCACAATAATTGACCACTAGAAGAAAGAGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTCACTGAAAAGTTTCACAATAATTGACCACTAGAAGAAAGAGAAT  250

seq1  TC  252
      ||
seq2  TC  252

seq1: chr11_34239350_34240252
seq2: B6Ng01-044O20.g_69_957

seq1  GAATTCCTCTCTCTGTGTGGACAGACACAGAGGGACACATTAGAGAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTCTCTGTGTGGACAGACACAGAGGGACACATTAGAGAAATG  50

seq1  ATAACTCTCACCAGAGATGCTATGACTCCTCGAGCAAGGCTTAGCAGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTCTCACCAGAGATGCTATGACTCCTCGAGCAAGGCTTAGCAGATA  100

seq1  CTCCTGTGATAGGGACAAGTGGTGGGGTACTTCCTGCCCCTCCCATCACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGTGATAGGGACAAGTGGTGGGGTACTTCCTGCCCCTCCCATCACG  150

seq1  CCCTGACCCTTGGCTGGGTTTCTTTCTGGGACACACCAGTTATGCCTACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGACCCTTGGCTGGGTTTCTTTCTGGGACACACCAGTTATGCCTACT  200

seq1  TCTACAGGGAGATAAATTGACATGCTACGTTCTCAGCCATGGGAAGTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAGGGAGATAAATTGACATGCTACGTTCTCAGCCATGGGAAGTATT  250

seq1  ATCAGAGAGGGAATCTGCCTGAAGAGTAGCACGAGTCTGACTTGATGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAGAGGGAATCTGCCTGAAGAGTAGCACGAGTCTGACTTGATGCTG  300

seq1  TTTCTCTGGCTTTTGCTAAAGAAGAATCATGATTGCAGTTATCCAGAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTGGCTTTTGCTAAAGAAGAATCATGATTGCAGTTATCCAGAAAT  350

seq1  CAGAGCTGGGCAATCAGCTGAGTGACTGGGGGACAGCACAGTGCTATCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTGGGCAATCAGCTGAGTGACTGGGGGACAGCACAGTGCTATCTT  400

seq1  GATGTATGCCTGCCCAAAGCCAGCAGAACATTTGTAAGTAGCGACTCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTATGCCTGCCCAAAGCCAGCAGAACATTTGTAAGTAGCGACTCACT  450

seq1  AAACTGTCAAGTGAAGAACTTAGCAGAAGGAGAATGGAGCCTCCCCCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTCAAGTGAAGAACTTAGCAGAAGGAGAATGGAGCCTCCCCCTGA  500

seq1  GAGCTGTGTGAAGACATGTTGACAAGGGCAAGTTCTTACTTGCAAAGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGTGTGAAGACATGTTGACAAGGGCAAGTTCTTACTTGCAAAGATG  550

seq1  AGAGAATTCTAGAACCCTGGGGCTTCTCCCCAGCCCCAGCCTCAGCCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATTCTAGAACCCTGGGGCTTCTCCCCAGCCCCAGCCTCAGCCCTG  600

seq1  TTCTGTTTTCATAGCCGCCGCTCGTGACAAAGAAGCGCTTCTGTCTCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTTTCATAGCCGCCGCTCGTGACAAAGAAGCGCTTCTGTCTCTGA  650

seq1  GAGAGCAGTAGAAACTCCTGGGGTTCAGTACTTTGGCTGCAAGGCTCTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCAGTAGAAACTCCTGGGGTTCAGTACTTTGGCTGCAAGGCTCTTG  700

seq1  CTTCTGCATGCTACCAGCCTGTGTAGATGGACTCAGCAGCTACATTGTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCATGCTACCAGCCTGTGTAGATGGACTCAGCAGCTACATTGTCC  750

seq1  CAGAGAAGGATGGCTGGCAGATGGTCAGACTAACCCAGCCCCAGTGCAGG  800
      ||||||| ||||||||||||||||||||||||||||||  |||||||| |
seq2  CAGAGAA-GATGGCTGGCAGATGGTCAGACTAACCCAG--CCAGTGCA-G  796

seq1  CTGGGAAGCAAGGAAACTGGGAAGCCCATGAGCTCATG-GCTGTGTGATC  849
      ||||||||| |||||||||||||| |||||||||||||   |||||||||
seq2  CTGGGAAGC-AGGAAACTGGGAAG-CCATGAGCTCATGCTTTGTGTGATC  844

seq1  CTGGGCAATATCCATATTTTTTTTCTGTTCTTGAATTTCATGTGTGAGAT  899
         ||||  ||||||||||||||| || ||| ||  |||||||| || ||
seq2  --TGGCA--ATCCATATTTTTTTT-TG-TCTGGA--TTCATGTGGGA-AT  885

seq1  GATA  903
      ||||
seq2  GATA  889