BAC Information

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BAC

Clone NameB6Ng01-045F21
Chromosome11 (Build37)
Map Location 41,624,514 - 41,752,415
singlet/doubletdoublet
Overlap geneGabrg2
Upstream geneLOC100039256, LOC100039285, Hspd1, LOC100039292
Downstream geneGabra1, Gabra6, Gabrb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-045F21.bB6Ng01-045F21.g
ACCDH870842DH870843
length8781,113
definitionDH870842|Mus musculus domesticus DNA, BAC clone: B6Ng01-045F21, 5' end.DH870843|Mus musculus domesticus DNA, BAC clone: B6Ng01-045F21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,751,539 - 41,752,415)(41,624,514 - 41,625,657)
sequence
gaattctccataaaatgaaaatacctgggaaaagcaattattacacatct
gcccttatgttgccccttccccacaagatcagcgggaagggagggaatgt
cacgcactaatagctcgaacagagatgcagagcttactttccaaatagtt
ctgtgaaagttgtctatctggcaggagccaaagtgccaattagatttcaa
attccacatatttttcatgaactggcatggtgagtgctcaggcattgttc
agataaacaggcttttcaaagaccctgtgtgaaacaaggtaggaagggga
aatctgtgcttcatggaagagagagagagagagagagagagagggagaga
gagagagagataaagagagagagcgagcgctggggtagtggaaataagat
atattaatttggcttctgtcatgatttactcagtgatcaattaagaagtg
gaaaagcccacttttccttatgtaccagtccatttttctgcatgccatta
gtttgactggagatcacagagcctggcaatagatcaaggcgagcatcttt
tttgttttagctactgcaagcctgttctttggcagagatactgtgagagt
atattgattttcatctcaggttctcatctggggtcatttcaactcacatt
cagcaagcacagttctttcattgggaagtggcagtgagttggagacactg
tcagtttctcccttgagaagagctgactaagtgtggggacactgccttgc
tgtctgggtttgttttacatatcacatacaataactttttaggatccaat
gctagaagctgcctggcttccttctctgtctcccatcagggagggaaacc
tgagctatttgcaaatgatcctgcccca
gaattctttcaaaatgttaaaaaaaaaaaaaaaccacgtacttggtattc
ttttcctaagagtcaaggggctaaggtcaaggaatgatgggattgttaac
aaggaacctgaaatgaataactgaattgatacgtacatatatttaaaaaa
aaaaaatcccaccaccaccaccaacaacaacaacaaaaactggacttttg
gtctgcaagagataagctagcagaaagaaagcatttcctttctttagaat
tgtcttttttttctctttttctttttaatttaatctttttttatttccca
gattccatccccctcccattccaccctttgaggggttccacatccacaag
catgtccctaaccccacaccccccaaccccaccagacctcctcattccgt
ggggcctccagtttcttgagggttaggtgaatcttctctgactgagtcca
aacctggtggtacttggatgtatatgtgttgggggcctatatcagctggt
ctatgctgcctggttggcggcccagtgtctgagagatcttggggttccaa
gttagttgagattgctggtcctcttatagggatcacactcctcctcagct
tcttccagcatttccctaattcaaccacagaggtcagctgcttctgtcca
ttagttgggtgtaaatatctgcatctgactctttcagctgctggtctggt
tttccagagggcagtttgatagtcccctttttgtgagcaaaacatagcct
tcagtaaatagtgtcaggtctttagggccttcccttgagctggatcccat
tttgggtctatcgccaacctctttttctcagggtctttcttcatttttat
tcccgaggttctttcttttctagcaagaattgagctgtctcgggatctct
aaagagcgacacagcacttcaggtttttttctacagattatgatttcagt
tgaaatccatgaggagagaacacaagctctttgaattttcatagctcttt
agatttttcatagatttctgaagagcaacacggttttttgactgtttcaa
gcactattctaggaggctgtctgaagtgaacagtctcagaatttttcggc
tttcgatttgatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_41751539_41752415
seq2: B6Ng01-045F21.b_43_920 (reverse)

seq1  TGGGGCAAGGATCATTTTGCAATAGCTCATGTTTCCCTCCCTGATGGGAA  50
      |||||| ||||||||||   ||||||||| |||||||||||||||||| |
seq2  TGGGGC-AGGATCATTTGCAAATAGCTCAGGTTTCCCTCCCTGATGGG-A  48

seq1  GAAGAAGAAGGGAAGCCAGGGCAGCTTCTAGCATTGTTCCCTGAAGAGTT  100
      ||   |||| |||||||| |||||||||||||||||   ||| || ||||
seq2  GACAGAGAA-GGAAGCCA-GGCAGCTTCTAGCATTGGATCCTAAAAAGTT  96

seq1  GTGGTATGTGATTATGTAAAACAAACCCAGACAAGCAA-GCAGTGTCCCC  149
       | |||||||| |||||||||||||||||||| ||||| |||||||||||
seq2  ATTGTATGTGA-TATGTAAAACAAACCCAGAC-AGCAAGGCAGTGTCCCC  144

seq1  ACACTTAGTCAGCTCTTCTCAAGGGAGAAACTGACAGTGTCTCC-ACTCA  198
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ACACTTAGTCAGCTCTTCTCAAGGGAGAAACTGACAGTGTCTCCAACTCA  194

seq1  CTGCCACTT-CCAATGAAAGAACTGTGCTTGCTGAATGTGAGTTG-AATG  246
      ||||||||| ||||||||||||||||||||||||||||||||||| ||||
seq2  CTGCCACTTCCCAATGAAAGAACTGTGCTTGCTGAATGTGAGTTGAAATG  244

seq1  A-CCCAGATGAGAACCTGAGATG-AAATCAATATACTCTCACAGTATCTC  294
      | ||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ACCCCAGATGAGAACCTGAGATGAAAATCAATATACTCTCACAGTATCTC  294

seq1  TGCCAAAGAACAGGCTTGCAGTAGCTAAAAC-AGAAAGATGCTCGCCTTG  343
      ||||||||||||||||||||||||||||||| | ||||||||||||||||
seq2  TGCCAAAGAACAGGCTTGCAGTAGCTAAAACAAAAAAGATGCTCGCCTTG  344

seq1  ATCTATTGCCAGGCTCTGTGATCTCCAGTCAAACTAATGGCATGCAGAAA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATTGCCAGGCTCTGTGATCTCCAGTCAAACTAATGGCATGCAGAAA  394

seq1  AATGGACTGGTACATAAGGAAAAGTGGGCTTTTCCACTTCTTAATTGATC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGACTGGTACATAAGGAAAAGTGGGCTTTTCCACTTCTTAATTGATC  444

seq1  ACTGAGTAAATCATGACAGAAGCCAAATTAATATATCTTATTTCCACTAC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGTAAATCATGACAGAAGCCAAATTAATATATCTTATTTCCACTAC  494

seq1  CCCAGCGCTCGCTCTCTCTCTTTATCTCTCTCTCTCTCTCCCTCTCTCTC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCGCTCGCTCTCTCTCTTTATCTCTCTCTCTCTCTCCCTCTCTCTC  544

seq1  TCTCTCTCTCTCTCTCTTCCATGAAGCACAGATTTCCCCTTCCTACCTTG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTTCCATGAAGCACAGATTTCCCCTTCCTACCTTG  594

seq1  TTTCACACAGGGTCTTTGAAAAGCCTGTTTATCTGAACAATGCCTGAGCA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACACAGGGTCTTTGAAAAGCCTGTTTATCTGAACAATGCCTGAGCA  644

seq1  CTCACCATGCCAGTTCATGAAAAATATGTGGAATTTGAAATCTAATTGGC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCATGCCAGTTCATGAAAAATATGTGGAATTTGAAATCTAATTGGC  694

seq1  ACTTTGGCTCCTGCCAGATAGACAACTTTCACAGAACTATTTGGAAAGTA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGGCTCCTGCCAGATAGACAACTTTCACAGAACTATTTGGAAAGTA  744

seq1  AGCTCTGCATCTCTGTTCGAGCTATTAGTGCGTGACATTCCCTCCCTTCC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGCATCTCTGTTCGAGCTATTAGTGCGTGACATTCCCTCCCTTCC  794

seq1  CGCTGATCTTGTGGGGAAGGGGCAACATAAGGGCAGATGTGTAATAATTG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGATCTTGTGGGGAAGGGGCAACATAAGGGCAGATGTGTAATAATTG  844

seq1  CTTTTCCCAGGTATTTTCATTTTATGGAGAATTC  877
      ||||||||||||||||||||||||||||||||||
seq2  CTTTTCCCAGGTATTTTCATTTTATGGAGAATTC  878

seq1: chr11_41624514_41625657
seq2: B6Ng01-045F21.g_67_1179

seq1  GAATTCTTTCAAAATGTTAAAAAAAAAAAAAAACCACGTACTTGGTATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCAAAATGTTAAAAAAAAAAAAAAACCACGTACTTGGTATTC  50

seq1  TTTTCCTAAGAGTCAAGGGGCTAAGGTCAAGGAATGATGGGATTGTTAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTAAGAGTCAAGGGGCTAAGGTCAAGGAATGATGGGATTGTTAAC  100

seq1  AAGGAACCTGAAATGAATAACTGAATTGATACGTACATATATTTAAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAACCTGAAATGAATAACTGAATTGATACGTACATATATTTAAAAAA  150

seq1  AAAAAATCCCACCACCACCACCAACAACAACAACAAAAACTGGACTTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATCCCACCACCACCACCAACAACAACAACAAAAACTGGACTTTTG  200

seq1  GTCTGCAAGAGATAAGCTAGCAGAAAGAAAGCATTTCCTTTCTTTAGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCAAGAGATAAGCTAGCAGAAAGAAAGCATTTCCTTTCTTTAGAAT  250

seq1  TGTCTTTTTTTTCTCTTTTTCTTTTTAATTTAATCTTTTTTTATTTCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTTTTTTCTCTTTTTCTTTTTAATTTAATCTTTTTTTATTTCCCA  300

seq1  GATTCCATCCCCCTCCCATTCCACCCTTTGAGGGGTTCCACATCCACAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCATCCCCCTCCCATTCCACCCTTTGAGGGGTTCCACATCCACAAG  350

seq1  CATGTCCCTAACCCCACACCCCCCAACCCCACCAGACCTCCTCATTCCGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCCCTAACCCCACACCCCCCAACCCCACCAGACCTCCTCATTCCGT  400

seq1  GGGGCCTCCAGTTTCTTGAGGGTTAGGTGAATCTTCTCTGACTGAGTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCCTCCAGTTTCTTGAGGGTTAGGTGAATCTTCTCTGACTGAGTCCA  450

seq1  AACCTGGTGGTACTTGGATGTATATGTGTTGGGGGCCTATATCAGCTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGGTGGTACTTGGATGTATATGTGTTGGGGGCCTATATCAGCTGGT  500

seq1  CTATGCTGCCTGGTTGGCGGCCCAGTGTCTGAGAGATCTTGGGGTTCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCTGCCTGGTTGGCGGCCCAGTGTCTGAGAGATCTTGGGGTTCCAA  550

seq1  GTTAGTTGAGATTGCTGGTCCTCTTATA-GGATCACACTCCTCCTCAGCT  599
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GTTAGTTGAGATTGCTGGTCCTCTTATAGGGATCACACTCCTCCTCAGCT  600

seq1  TCTTCCAGCATTTCCCTAATTCAACCACAGAGGTCAGCTGCTTCTGTCCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCAGCATTTCCCTAATTCAACCACAGAGGTCAGCTGCTTCTGTCCA  650

seq1  TTAGTTGGGTGTAAATATCTGCATCTGACTCTTTCAGCTGCTGGTCTGGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTGGGTGTAAATATCTGCATCTGACTCTTTCAGCTGCTGGTCTGGT  700

seq1  TTTCCAGAGGGCAGTTTGATAGTCCCCTTTTTGTGAGCAAAACATAGCC-  748
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTTCCAGAGGGCAGTTTGATAGTCCCCTTTTTGTGAGCAAAACATAGCCT  750

seq1  TCAGT-AATAGTGTCAGG-CCTTAGGGCCTTCCCTTGAGCTGGATCCCAA  796
      ||||| |||||||||||| | |||||||||||||||||||||||||||| 
seq2  TCAGTAAATAGTGTCAGGTCTTTAGGGCCTTCCCTTGAGCTGGATCCCAT  800

seq1  TTTGGGTCTATCGCCAACCTCTTTTCCTCAGGGTC-TTCTTCATTTTTAT  845
      ||||||||||||||||||||||||| ||||||||| ||||||||||||||
seq2  TTTGGGTCTATCGCCAACCTCTTTTTCTCAGGGTCTTTCTTCATTTTTAT  850

seq1  TCCCGAGGTTCTTTCTTTTCTAGCAAGAACTGAGCTGTCCCGGGATCTCT  895
      ||||||||||||||||||||||||||||| ||||||||| ||||||||||
seq2  TCCCGAGGTTCTTTCTTTTCTAGCAAGAATTGAGCTGTCTCGGGATCTCT  900

seq1  AAAGAGCGAACACAGCACTTCAAGGTTTTTTTCTAACAAGATTTATGATT  945
      |||||||| |||||||||||| |||||||||||||   ||| ||||||||
seq2  AAAGAGCG-ACACAGCACTTC-AGGTTTTTTTCTA--CAGA-TTATGATT  945

seq1  TCAGTTGGAAAATCCATGAAGAGAGAACAC-AGCTCTTTTGAAAATTTTT  994
      |||||||  |||||||||| |||||||||| ||||| ||||||   ||||
seq2  TCAGTTG--AAATCCATGAGGAGAGAACACAAGCTC-TTTGAA---TTTT  989

seq1  CATAGCTCTTTTAGAATTTTTTCAAATAGTATTTTCTGAGAGAGCAAACA  1044
      |||||||| ||||||  ||||||| | |    ||||||| ||||| ||||
seq2  CATAGCTC-TTTAGA--TTTTTCATAGA----TTTCTGA-AGAGC-AACA  1030

seq1  CGGTTCTTTTTGACTGTTTTCAAGCAGCTATCTCGAGAAGGCTGTCTGAT  1094
      ||||  |||||||||| ||||||||| |||| || || ||||||||||  
seq2  CGGT--TTTTTGACTG-TTTCAAGCA-CTAT-TCTAGGAGGCTGTCTG--  1073

seq1  AGGTGAACACAGTTCTTCAAGAATTTTTTTCTGGCTTTCTGATTTTGATC  1144
      | |||||||    |||   |||||||||    ||||||| || |||||||
seq2  AAGTGAACA---GTCT--CAGAATTTTT---CGGCTTTC-GA-TTTGATC  1113