BAC Information

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BAC

Clone NameB6Ng01-046E12
Chromosome11 (Build37)
Map Location 64,327,993 - 64,453,692
singlet/doubletdoublet
Overlap geneHs3st3a1
Upstream geneLOC100041690, LOC654442, LOC668297, Hs3st3b1, Cox10, 2810001G20Rik, EG544785
Downstream geneLOC626959, Elac2, AU040829, 1700086D15Rik, LOC100041790, Myocd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046E12.bB6Ng01-046E12.g
ACCDH871494DH871495
length1,112984
definitionDH871494|Mus musculus domesticus DNA, BAC clone: B6Ng01-046E12, 5' end.DH871495|Mus musculus domesticus DNA, BAC clone: B6Ng01-046E12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,452,538 - 64,453,692)(64,327,993 - 64,329,232)
sequence
gaattcttttattaacccagaccacccaactcttgcagatatcaaaatgt
taaccagttgccttttaaaatactgtaagttactttcccactttcataat
gatttatgcaatgttaactaaaagtgccataaatagcgactcagtttgag
aaactcagttataatcagttttgtgatttttgtctattttgtagtaacag
aaagtagactggacagatactattttttttcattttataaatgaatatgt
actgcatgtaaagatgtaaatatttttctccaaaataggtgacagaataa
agacagcaaaataggtctgattatacatatgccacatattctattgtccc
tccctgcctctctgctaaagttatttgaaggagactgaaaaaaatccttt
atagctttaagtcagctgcatctcattaaaattgtgggacattttcacaa
aagtttgataagccttaactcctcagaattgttcaggagtaggagcctaa
aaccagtgctcttgagtattcttctggaaagggtttcagcatagatttgc
catttcagcaaatgctagctcgtgcttgtctgtaatggtgaaatgtaaaa
ttaacttgcggacagtttttatatgtgtaagacagccttcataagactgg
ctattttctaaaattaatattagttacagctacaaaatgaaaggccagct
cttcctcatgattccaatttctgttcacacattataatgttctacacgat
aatagaatgacatatttcttagctcataggaacatctgtgaaaagatgca
gaaaggcttctgctagaagtcaaccccatgtgacagtgactgccgctgtc
ctagacagaaggggcaaacactgaaaagtgtcatttcaaggctgattctt
acatttttggctttaaagcactgaatcatctctcacagctctatatgaaa
gcaaatgctagacagtctacacacagtactctagctaaatgtgatacaat
taaatcagtttccctctagctctgatgagagaactgtctactgatgtcaa
tgtagctaatgacaccctaagaatacccctcacaaacagatcttgatctg
aaaaaaagtgag
gaattcaccgattggctgaacatgctggtcactgggccccaaggatgctc
ttgtctctgcctccccagtgcagggttacagacacacagtactgtgtctg
acattttgtgtatttctggggatctgaactcaggtcgtcatgctttcctg
gtgagcactttgccaacaaagccatcttcagagctctgatcaccaactat
tcatggagcatgctattttagttatttttctgttgctgtgataaaacacc
acggccaaggtgatttataaaaagaaaggtttatttggggctgacagatc
cagagggatatttatgagtctgacaccatcacagagaacaggcaggcctg
caagcaccatgcatgcatgacggcaggaacgctaaaagctcacatctcaa
atcatcaggaaaccaagagagcacacttgaaatggagtaggcctttaaac
tctcaaactccacctcagtggcagacttctaccaccccagaccatgtctc
ctaaacccccaccaacagagacaccaactgaggatcaagtattcaagtgc
cagagactcttggagactatctcactcaaaccaccatagaggtcacatgg
cagacacagtaccaggactggctgagttgattagtgttctttgtgagaca
caagcaggtgtgattggcagatgtgaagccatccattctgactgtgctgt
attgggcgtatatgttgggtgtattcgggttttgatgagtatttgggtac
cttgaatttgggaccatcatgagtatgtgaccatgggtggacagctgtgc
actgtcactagttgctggggatatgcattggctctcataaatggtgccaa
ccagttctagagtcaccgtgtcttgcttgcactctaccagtaagattcag
ttgctgcacatcctcacccacactgggaaacctcagttactttcctcaag
ctgtatggtggatgagtcatgttggggtaatgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_64452538_64453692
seq2: B6Ng01-046E12.b_43_1154 (reverse)

seq1  CTCACTTTTTTTTTTTTATCAGATTCAAGGTATCTGGTTTTGTTGAGGGT  50
      |||||||||||       ||||| |||||  |||||  |||| |||||| 
seq2  CTCACTTTTTT-------TCAGA-TCAAG--ATCTG--TTTG-TGAGGG-  36

seq1  GTATTTCCTAAGGGGTTGTCATTTAAGCCCTACATTTGGACACTCAGTAG  100
      |||||  || ||||  |||||||  ||  |||||||  |||| |||||||
seq2  GTATT--CTTAGGG--TGTCATT--AG--CTACATT--GACA-TCAGTAG  75

seq1  ACAAGGTTCTCTCATCAGAGGCTAGAGGGGAAACTGAATTTTATTTGTAA  150
      |||  |||||||||||||| |||||| ||||||||||  |||| ||||| 
seq2  ACA--GTTCTCTCATCAGA-GCTAGA-GGGAAACTGA--TTTAATTGTA-  118

seq1  TTCACATTTAAGCTAGAGTAACTGTGTGTAGAACTGTCTAGCCATTTGCT  200
       |||||||| ||||||||| ||||||||||| ||||||||| ||||||||
seq2  -TCACATTT-AGCTAGAGT-ACTGTGTGTAG-ACTGTCTAG-CATTTGCT  163

seq1  TTCAATATAGGAGCTGTGAAGAGATGGATTCAGTGCTTTAAAGCCAAAAA  250
      ||| ||||| |||||||| |||||| ||||||||||||||||||||||||
seq2  TTC-ATATA-GAGCTGTG-AGAGAT-GATTCAGTGCTTTAAAGCCAAAAA  209

seq1  TGTAAGAATCAGCCTTGAAATGACACTTTTCAGTGTTTTGCCCCTTCTGT  300
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGTAAGAATCAGCCTTGAAATGACACTTTTCAGTG-TTTGCCCCTTCTGT  258

seq1  CTAGGACAGCGGCAGTCACCTGTCACATGGGGTTGACTTCTAGCAGAAGC  350
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CTAGGACAGCGGCAGTCA-CTGTCACATGGGGTTGACTTCTAGCAGAAGC  307

seq1  CTTTCTGCATCTTTTCACAGATGTTCCTATGAGCTAAGAAATATGTCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGCATCTTTTCACAGATGTTCCTATGAGCTAAGAAATATGTCATT  357

seq1  CTATTATCGTGTAGAACATTATAATGTGTGAACAGAAATTGGAATCATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTATCGTGTAGAACATTATAATGTGTGAACAGAAATTGGAATCATGA  407

seq1  GGAAGAGCTGGCCTTTCATTTTGTAGCTGTAACTAATATTAATTTTAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGCTGGCCTTTCATTTTGTAGCTGTAACTAATATTAATTTTAGAA  457

seq1  AATAGCCAGTCTTATGAAGGCTGTCTTACACATATAAAAACTGTCCGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCCAGTCTTATGAAGGCTGTCTTACACATATAAAAACTGTCCGCAA  507

seq1  GTTAATTTTACATTTCACCATTACAGACAAGCACGAGCTAGCATTTGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATTTTACATTTCACCATTACAGACAAGCACGAGCTAGCATTTGCTG  557

seq1  AAATGGCAAATCTATGCTGAAACCCTTTCCAGAAGAATACTCAAGAGCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGCAAATCTATGCTGAAACCCTTTCCAGAAGAATACTCAAGAGCAC  607

seq1  TGGTTTTAGGCTCCTACTCCTGAACAATTCTGAGGAGTTAAGGCTTATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTAGGCTCCTACTCCTGAACAATTCTGAGGAGTTAAGGCTTATCA  657

seq1  AACTTTTGTGAAAATGTCCCACAATTTTAATGAGATGCAGCTGACTTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTGTGAAAATGTCCCACAATTTTAATGAGATGCAGCTGACTTAAA  707

seq1  GCTATAAAGGATTTTTTTCAGTCTCCTTCAAATAACTTTAGCAGAGAGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATAAAGGATTTTTTTCAGTCTCCTTCAAATAACTTTAGCAGAGAGGC  757

seq1  AGGGAGGGACAATAGAATATGTGGCATATGTATAATCAGACCTATTTTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGGACAATAGAATATGTGGCATATGTATAATCAGACCTATTTTGC  807

seq1  TGTCTTTATTCTGTCACCTATTTTGGAGAAAAATATTTACATCTTTACAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTATTCTGTCACCTATTTTGGAGAAAAATATTTACATCTTTACAT  857

seq1  GCAGTACATATTCATTTATAAAATGAAAAAAAATAGTATCTGTCCAGTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTACATATTCATTTATAAAATGAAAAAAAATAGTATCTGTCCAGTCT  907

seq1  ACTTTCTGTTACTACAAAATAGACAAAAATCACAAAACTGATTATAACTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTGTTACTACAAAATAGACAAAAATCACAAAACTGATTATAACTG  957

seq1  AGTTTCTCAAACTGAGTCGCTATTTATGGCACTTTTAGTTAACATTGCAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTCAAACTGAGTCGCTATTTATGGCACTTTTAGTTAACATTGCAT  1007

seq1  AAATCATTATGAAAGTGGGAAAGTAACTTACAGTATTTTAAAAGGCAACT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATTATGAAAGTGGGAAAGTAACTTACAGTATTTTAAAAGGCAACT  1057

seq1  GGTTAACATTTTGATATCTGCAAGAGTTGGGTGGTCTGGGTTAATAAAAG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAACATTTTGATATCTGCAAGAGTTGGGTGGTCTGGGTTAATAAAAG  1107

seq1  AATTC  1155
      |||||
seq2  AATTC  1112

seq1: chr11_64327993_64329232
seq2: B6Ng01-046E12.g_68_1051

seq1  GAATTCACCGATTGGCTGAACATGCTGGTCACTGGGCCCCAAGGATGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCGATTGGCTGAACATGCTGGTCACTGGGCCCCAAGGATGCTC  50

seq1  TTGTCTCTGCCTCCCCAGTGCAGGGTTACAGACACACAGTACTGTGTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTCTGCCTCCCCAGTGCAGGGTTACAGACACACAGTACTGTGTCTG  100

seq1  ACATTTTGTGTATTTCTGGGGATCTGAACTCAGGTCGTCATGCTTTCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTGTGTATTTCTGGGGATCTGAACTCAGGTCGTCATGCTTTCCTG  150

seq1  GTGAGCACTTTGCCAACAAAGCCATCTTCAGAGCTCTGATCACCAACTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCACTTTGCCAACAAAGCCATCTTCAGAGCTCTGATCACCAACTAT  200

seq1  TCATGGAGCATGCTATTTTAGTTATTTTTCTGTTGCTGTGATAAAACACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGAGCATGCTATTTTAGTTATTTTTCTGTTGCTGTGATAAAACACC  250

seq1  ACGGCCAAGGTGATTTATAAAAAGAAAGGTTTATTTGGGGCTGACAGATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGCCAAGGTGATTTATAAAAAGAAAGGTTTATTTGGGGCTGACAGATC  300

seq1  CAGAGGGATATTTATGAGTCTGACACCATCACAGAGAACAGGCAGGCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGGATATTTATGAGTCTGACACCATCACAGAGAACAGGCAGGCCTG  350

seq1  CAAGCACCATGCATGCATGACGGCAGGAACGCTAAAAGCTCACATCTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCACCATGCATGCATGACGGCAGGAACGCTAAAAGCTCACATCTCAA  400

seq1  ATCATCAGGAAACCAAGAGAGCACACTTGAAATGGAGTAGGCCTTTAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCAGGAAACCAAGAGAGCACACTTGAAATGGAGTAGGCCTTTAAAC  450

seq1  TCTCAAACTCCACCTCAGTGGCAGACTTCTACCACCCCAGACCATGTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAACTCCACCTCAGTGGCAGACTTCTACCACCCCAGACCATGTCTC  500

seq1  CTAAACCCCCACCAACAGAGACACCAACTGAGGATCAAGTATTCAAGTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACCCCCACCAACAGAGACACCAACTGAGGATCAAGTATTCAAGTGC  550

seq1  CAGAGACTCTTGGAGACTATCTCACTCAAACCACCATAGAGGTCACATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACTCTTGGAGACTATCTCACTCAAACCACCATAGAGGTCACATGG  600

seq1  CAGACACAGTACCAGGACTGGCTGAGTTGATTAGTGTTCTTTGTGAGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACAGTACCAGGACTGGCTGAGTTGATTAGTGTTCTTTGTGAGACA  650

seq1  CAAGCAGGTGTGATTGGCAGATGTGAAGCCATCCATTCTGACTGTGCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAGGTGTGATTGGCAGATGTGAAGCCATCCATTCTGACTGTGCTGT  700

seq1  ATTGGGCGTATATGTTGGGTGTATTCGGGTTTTGATGAGTATTTGGGTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGCGTATATGTTGGGTGTATTCGGGTTTTGATGAGTATTTGGGTAC  750

seq1  CTTGAATTTGGGACCATCATGAGTATGTGACCATGGGTGGACAGCTGTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAATTTGGGACCATCATGAGTATGTGACCATGGGTGGACAGCTGTGC  800

seq1  ACTGTCACTAGTTGCTGGGGATATGCATTTGGCTCTCATAAATGGTGCCA  850
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ACTGTCACTAGTTGCTGGGGATATGCA-TTGGCTCTCATAAATGGTGCCA  849

seq1  ACCAGTTCTAGAGTCACCGTGTC-TGCTTGCACTCCACCAGTAAGATTCC  899
      ||||||||||||||||||||||| ||||||||||| |||||||||||| |
seq2  ACCAGTTCTAGAGTCACCGTGTCTTGCTTGCACTCTACCAGTAAGATT-C  898

seq1  AGTTGCTGCACATCCTCACCCACACTGGGAAAACCTCAGTTACTTTTCCT  949
      ||||||||||||||||||||||||||||| ||||||||||||| ||||||
seq2  AGTTGCTGCACATCCTCACCCACACTGGG-AAACCTCAGTTAC-TTTCCT  946

seq1  CTAGCTGTATGGGTGGATGAGTCAGGTTGGGGTATTGATACAGGTGGTAT  999
      | |||||||| ||||||||||||| ||||||||| ||||           
seq2  CAAGCTGTAT-GGTGGATGAGTCATGTTGGGGTAATGAT-----------  984

seq1  TAATTTTCATTTCCCTGATTAATCAATCCAAATAACTTCTCAAGAATTCA  1049
                                                        
seq2  --------------------------------------------------  984

seq1  TTAAACATCTGAATACTGTGTTTTTATGGAATTGTTATTCAAGGCTTTTG  1099
                                                        
seq2  --------------------------------------------------  984

seq1  CTCATTTTCTTTCATTCTGTTTATTTATTTATTTAACTTATTGATTTGTA  1149
                                                        
seq2  --------------------------------------------------  984

seq1  GGAGTTCTTTGTGTATTACAGATATGGCTCTTGACAGACATACAGTTTGT  1199
                                                        
seq2  --------------------------------------------------  984

seq1  AAATACTTCCATGCTGGGGTTTGTCTCTTTACCCACATGAT  1240
                                               
seq2  -----------------------------------------  984