BAC Information

Click to search

BAC

Clone NameB6Ng01-047K23
Chromosome11 (Build37)
Map Location 116,246,351 - 116,394,111
singlet/doubletdoublet
Overlap gene1110014K08Rik, Qrich2, Prpsap1, LOC629971
Upstream geneCdr2l, Ict1, Atp5h, Kctd2, 4933422H20Rik, Slc16a5, Armc7, Nt5c, Hn1, Sumo2, Nup85, Gga3, Mrps7, Mif4gd, Slc25a19, Grb2, LOC100043184, 2310067B10Rik, Caskin2, Tsen54, Llgl2, Recql5, 2210020M01Rik, Sap30bp, Itgb4, Galk1, H3f3b, Unk, Unc13d, Wbp2, Trim47, Trim65, Mrpl38, Fbf1, Acox1, 2310004N24Rik, Cdk3, Evpl, Srp68, Galr2, Exoc7, Foxj1, LOC668255
Downstream geneSphk1, Ube2o, Aanat, Rhbdf2, Cygb, OTTMUSG00000003947, 1810032O08Rik, St6galnac2, LOC634720, BC018473, St6galnac1, Mxra7, Jmjd6, 1110005A03Rik, LOC100043293, Sfrs2, Mfsd11, Mgat5b, LOC100042036, Sec14l1, Sept9, EG667423
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047K23.bB6Ng01-047K23.g
ACCDH872481DH872482
length1,0371,042
definitionDH872481|Mus musculus domesticus DNA, BAC clone: B6Ng01-047K23, 5' end.DH872482|Mus musculus domesticus DNA, BAC clone: B6Ng01-047K23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,246,351 - 116,247,405)(116,393,035 - 116,394,111)
sequence
gaattcctgaaaaccatcctccaccttcgtacgtgtgtgtggcatgctgg
caaaacattttattctttttcttttatgtttttttgagacagggattttt
ttttttttcttttttgagacagggtttctctgtgtagtcctggctgtcct
ggaactcactttgtagaccaggctggcctcaaactcagaaatttgcctgc
ctctgcctcccaagtgctgggattaaaggtgtgtgccaccacgcctggca
ccaaaattgtttttcttaagacagaaagaaaggaaaaaaccttgtgtcta
agtcagggtttctattcctacatagacatcatgaccaagaagcaagttgg
agaggaaagggtttattcagcttacacttccacattgctgttgatcacca
aaggaagttgggactggaactcaagcaggtcaggaagcaggagctgatgc
agaggccatggagggatgctacttactggcttgcttcccctggcttgctc
agcctgctctcttatagaaccaagactaccagcacagagatggcatcacc
cacaaggggccctcccccttgatcactaattgagaaaatgcctgagctca
tggaggcattccctaactgaagctcctgtctctgtgataactccagctgt
gtcaagctgacacaaaaccagccagtacaccttgtctctagctgagtgtc
acggcacttctaaaaatcagcacttgaaaagtagaggcagggctggagac
atggatgggtcatcagttaagagcaatggctactcttccaaaggacctgg
gttcaattcccagcacccacactacagctcctaacagtctgcaacttcag
ctccaggggatctggcactgtaatgaagacacacatgcaggcaaaacact
aaagcacataaaataaaaataaacaaagcactatttttaaaatcactaaa
aagaaagaaggatgataaagaagaatgagaagagaaagaagaggtgagat
cagaggagttcaagcttttgctacacagcaaggttga
gaattccacatccagaccctagtgctgtcctgactctgggccagggtcgg
gtcacccgccacccgcgaacttctcttcctcccctgctcctccgcggtgc
ctttacttttagcttccagatgcagccgctggctcactcagacgccgaac
ccgaagcagtctggcacgcctttcaggagaaagctgaaccggtttgggga
cgaagtcgagatgagagtacctcgtcagcaacctccaaaggtggagtctt
tccccccagggaacactatcaaggcctgagatgctgcctgccgcggatga
tcgggatccacgatcctcaccgactggaggaacccagcagtgtggacagg
gcaatgggggctctcatcaggattggagaggctagcatgggggcgtggtc
ccaacctccccaccccttcgggcgatctcggggtgaaaatgcacacgtgc
cccggtgtatgcgcttcggtggagataaacaagacgcatagttgtgtaag
tgatatatttcatggcaagtgacctgagggtgtccgtgactaaccggagt
taaatttttggaagattattagcggagacttggaaaaagaagctcccaaa
tcctaccaagcaccaaaaacagacaccaaactcctcaaggaagctgcatt
ggtttagctccggttacagagaactggcgcgcccacaccggcccccgcgc
gaccccacccacctctatcttcgcatcgcttcttaaagtccagaagaggc
gagtccaagaggaaaacgaacccagataagaaaggattgcagtgaactag
gtcacgccttggaaggggcttcctctcccagaggaccctggagttcctcg
accgagtttctcagtattttagagtctcaggagggccagggcaaaggctg
ggacttgcgttccgcacgcgtcactgcatatatgctggctctgtacagcg
cggacagctgaccgatcatgacgcccgagtgctcgagagtgactcacgac
ccgctcacggtgagactcgaacacacaccgaaaaaaaatgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_116246351_116247405
seq2: B6Ng01-047K23.b_43_1079

seq1  GAATTCCTGAAAACCATCCTCCACCTTCGTACGTGTGTGTGGCATGCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGAAAACCATCCTCCACCTTCGTACGTGTGTGTGGCATGCTGG  50

seq1  CAAAACATTTTATTCTTTTTCTTTTATGTTTTTTTGAGACAGGGATTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACATTTTATTCTTTTTCTTTTATGTTTTTTTGAGACAGGGATTTTT  100

seq1  TTTTTTTTCTTTTTTGAGACAGGGTTTCTCTGTGTAGTCCTGGCTGTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCTTTTTTGAGACAGGGTTTCTCTGTGTAGTCCTGGCTGTCCT  150

seq1  GGAACTCACTTTGTAGACCAGGCTGGCCTCAAACTCAGAAATTTGCCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTCACTTTGTAGACCAGGCTGGCCTCAAACTCAGAAATTTGCCTGC  200

seq1  CTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGTGCCACCACGCCTGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGTGCCACCACGCCTGGCA  250

seq1  CCAAAATTGTTTTTCTTAAGACAGAAAGAAAGGAAAAAACCTTGTGTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATTGTTTTTCTTAAGACAGAAAGAAAGGAAAAAACCTTGTGTCTA  300

seq1  AGTCAGGGTTTCTATTCCTACATAGACATCATGACCAAGAAGCAAGTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGGGTTTCTATTCCTACATAGACATCATGACCAAGAAGCAAGTTGG  350

seq1  AGAGGAAAGGGTTTATTCAGCTTACACTTCCACATTGCTGTTGATCACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAAGGGTTTATTCAGCTTACACTTCCACATTGCTGTTGATCACCA  400

seq1  AAGGAAGTTGGGACTGGAACTCAAGCAGGTCAGGAAGCAGGAGCTGATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGTTGGGACTGGAACTCAAGCAGGTCAGGAAGCAGGAGCTGATGC  450

seq1  AGAGGCCATGGAGGGATGCTACTTACTGGCTTGCTTCCCCTGGCTTGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCCATGGAGGGATGCTACTTACTGGCTTGCTTCCCCTGGCTTGCTC  500

seq1  AGCCTGCTCTCTTATAGAACCAAGACTACCAGCACAGAGATGGCATCACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGCTCTCTTATAGAACCAAGACTACCAGCACAGAGATGGCATCACC  550

seq1  CACAAGGGGCCCTCCCCCTTGATCACTAATTGAGAAAATGCCTGAGCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGGGGCCCTCCCCCTTGATCACTAATTGAGAAAATGCCTGAGCTCA  600

seq1  TGGAGGCATTCCCTAACTGAAGCTCCTGTCTCTGTGATAACTCCAGCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGCATTCCCTAACTGAAGCTCCTGTCTCTGTGATAACTCCAGCTGT  650

seq1  GTCAAGCTGACACAAAACCAGCCAGTACACCTTGTCTCTAGCTGAGTGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGCTGACACAAAACCAGCCAGTACACCTTGTCTCTAGCTGAGTGTC  700

seq1  ACGGCACTTCTAAAAATCAGCACTTGAAAAGTAGAGGCAGGGCTGGAGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGCACTTCTAAAAATCAGCACTTGAAAAGTAGAGGCAGGGCTGGAGAC  750

seq1  ATGGATGGGTCATCAGTTAAGAGCAATGGCTACTCTTCCAAAGGACCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATGGGTCATCAGTTAAGAGCAATGGCTACTCTTCCAAAGGACCTGG  800

seq1  GTTCAATTCCCAGCACCCACACTACAGCTCCTAACAGTCTGCAACTCCAG  850
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GTTCAATTCCCAGCACCCACACTACAGCTCCTAACAGTCTGCAACTTCAG  850

seq1  CTCCAGGGGATCTGGCACTGTAATGAAGACACACATGCAGGCAAAACACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGGGGATCTGGCACTGTAATGAAGACACACATGCAGGCAAAACACT  900

seq1  AAAGCACATAAAATAAAAATAAACAAAGCACTAATTTTTTTAAAATCACT  950
      |||||||||||||||||||||||||||||||||   ||||||||||||||
seq2  AAAGCACATAAAATAAAAATAAACAAAGCACTA---TTTTTAAAATCACT  947

seq1  TAAAAAAGAAAGAAAGGAAGGAACAAAGAAAGAATGGAAGGAAGGAAGAA  1000
        |||||||||| ||||| |  | |||| |||||||    ||||  ||||
seq2  --AAAAAGAAAG-AAGGATG--ATAAAG-AAGAATG---AGAAG--AGAA  986

seq1  AGATAGAGGTGAAGATCAGAAGGAGTTCAAAGCCTCTGCTACACAGCAAG  1050
      ||| ||||||| ||||||| |||||||| |||| | ||||||||||||||
seq2  AGA-AGAGGTG-AGATCAG-AGGAGTTC-AAGCTTTTGCTACACAGCAAG  1032

seq1  GTTGA  1055
      |||||
seq2  GTTGA  1037

seq1: chr11_116393035_116394111
seq2: B6Ng01-047K23.g_66_1107 (reverse)

seq1  CTCATTTTTTTTTTTTTTTGGTTGGTTGGTTGTTTCCGGGAGTTTCTCCA  50
      ||||||||||           || | ||  ||||     |||| ||    
seq2  CTCATTTTTT-----------TTCGGTGTGTGTT----CGAGTCTC----  31

seq1  CCCGTGAGCGTGTCGCTGAGTCACCTTCTCGGAAGGCACTCGGGGCGTTC  100
       ||||||||| |||| ||||||||  |||||    |||||| ||||| ||
seq2  ACCGTGAGCGGGTCG-TGAGTCAC--TCTCG---AGCACTC-GGGCG-TC  73

seq1  ATGATCCGGTCAGGCTGTCCCGCGGCTGTACAGAGCCAAGGCATATATTG  150
      ||||| |||||| ||||| |||| ||||||||||||||  ||||||| ||
seq2  ATGAT-CGGTCA-GCTGT-CCGC-GCTGTACAGAGCCA--GCATATA-TG  116

seq1  CAGTGACGCGTGCGGAACCGCAGGT-CCAGCCTGTGCCCCTGGCCCTCCT  199
      ||||||||||||||||| |||| || ||||||| || |||||||||||||
seq2  CAGTGACGCGTGCGGAA-CGCAAGTCCCAGCCTTTG-CCCTGGCCCTCCT  164

seq1  GGGGACTCCTAAAATACTGAGAAACTCGGTCGGGGAACTCCAGGGTCCTC  249
       | |||| |||||||||||||||||||||||| |||||||||||||||||
seq2  -GAGACT-CTAAAATACTGAGAAACTCGGTCGAGGAACTCCAGGGTCCTC  212

seq1  TGGGAGA-GAAGCCACCTTCAAGGCGTGACCTAGTTCACTGCAATCCTTT  298
      ||||||| |||||| | | |||||||||||||||||||||||||||||||
seq2  TGGGAGAGGAAGCCCCTTCCAAGGCGTGACCTAGTTCACTGCAATCCTTT  262

seq1  CTTATCTGGGTTCGTTTTCCTCTTGGACTCGCCTCTTCTGGACTTTAAGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCTGGGTTCGTTTTCCTCTTGGACTCGCCTCTTCTGGACTTTAAGA  312

seq1  AGCGATGCGAAGATAGAGGTGGGTGGGGTCGCGCGGGGGCCGGTGTGGGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGATGCGAAGATAGAGGTGGGTGGGGTCGCGCGGGGGCCGGTGTGGGC  362

seq1  GCGCCAGTTCTCTGTAACCGGAGCTAAACCAATGCAGCTTCCTTG-GGAG  447
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GCGCCAGTTCTCTGTAACCGGAGCTAAACCAATGCAGCTTCCTTGAGGAG  412

seq1  TTTGGTGTCTGTTTTTGGTGCTTGGTAGGATTTGGGAGCTTCTTTTTCCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTGTCTGTTTTTGGTGCTTGGTAGGATTTGGGAGCTTCTTTTTCCA  462

seq1  AGTCTCCGCTAATAATCTTCCAAAAATTTAACTCCGGTTAGTCACGGACA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCCGCTAATAATCTTCCAAAAATTTAACTCCGGTTAGTCACGGACA  512

seq1  CCCTCAGGTCACTTGCCATGAAATATATCACTTACACAACTATGCGTCTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAGGTCACTTGCCATGAAATATATCACTTACACAACTATGCGTCTT  562

seq1  GTTTATCTCCACCGAAGCGCATACACCGGGGCACGTGTGCATTTTCACCC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATCTCCACCGAAGCGCATACACCGGGGCACGTGTGCATTTTCACCC  612

seq1  CGAGATCGCCCGAAGGGGTGGGGAGGTTGGGACCACGCCCCCATGCTAGC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGATCGCCCGAAGGGGTGGGGAGGTTGGGACCACGCCCCCATGCTAGC  662

seq1  CTCTCCAATCCTGATGAGAGCCCCCATTGCCCTGTCCACACTGCTGGGTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCAATCCTGATGAGAGCCCCCATTGCCCTGTCCACACTGCTGGGTT  712

seq1  CCTCCAGTCGGTGAGGATCGTGGATCCCGATCATCCGCGGCAGGCAGCAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAGTCGGTGAGGATCGTGGATCCCGATCATCCGCGGCAGGCAGCAT  762

seq1  CTCAGGCCTTGATAGTGTTCCCTGGGGGGAAAGACTCCACCTTTGGAGGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGCCTTGATAGTGTTCCCTGGGGGGAAAGACTCCACCTTTGGAGGT  812

seq1  TGCTGACGAGGTACTCTCATCTCGACTTCGTCCCCAAACCGGTTCAGCTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGACGAGGTACTCTCATCTCGACTTCGTCCCCAAACCGGTTCAGCTT  862

seq1  TCTCCTGAAAGGCGTGCCAGACTGCTTCGGGTTCGGCGTCTGAGTGAGCC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGAAAGGCGTGCCAGACTGCTTCGGGTTCGGCGTCTGAGTGAGCC  912

seq1  AGCGGCTGCATCTGGAAGCTAAAAGTAAAGGCACCGCGGAGGAGCAGGGG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGCTGCATCTGGAAGCTAAAAGTAAAGGCACCGCGGAGGAGCAGGGG  962

seq1  AGGAAGAGAAGTTCGCGGGTGGCGGGTGACCCGACCCTGGCCCAGAGTCA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAGAAGTTCGCGGGTGGCGGGTGACCCGACCCTGGCCCAGAGTCA  1012

seq1  GGACAGCACTAGGGTCTGGATGTGGAATTC  1077
      ||||||||||||||||||||||||||||||
seq2  GGACAGCACTAGGGTCTGGATGTGGAATTC  1042