BAC Information

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BAC

Clone NameB6Ng01-049J16
Chromosome11 (Build37)
Map Location 78,789,427 - 78,900,880
singlet/doubletdoublet
Overlap geneLgals9, Ksr1
Upstream geneSez6, LOC100043518, Phf12, Dhrs13, Flot2, Eral1, BC017647, LOC100043525, Traf4, Nek8, Tlcd1, Rpl23a, Rab34, 4933404M19Rik, Supt6h, Sdf2, 2610507B11Rik, BC030499, LOC100043544, LOC100042648, Spag5, Aldoc, Pigs, Unc119, Foxn1, OTTMUSG00000000132, Slc13a2, Slc46a1, A830091I15Rik, Vtn, Og9x, AI316787, Poldip2, Tnfaip1, Ift20, Tmem97, Nlk, LOC100043570, LOC100042674, 1810009O10Rik, 1810012P15Rik, Nos2
Downstream geneLOC100042697, Wsb1, Nf1, Omg, Evi2b, Evi2a, Rab11fip4, OTTMUSG00000000185, LOC432584, Utp6, ENSMUSG00000072631, Suz12, Crlf3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049J16.bB6Ng01-049J16.g
ACCDH873819DH873820
length1,0131,155
definitionDH873819|Mus musculus domesticus DNA, BAC clone: B6Ng01-049J16, 5' end.DH873820|Mus musculus domesticus DNA, BAC clone: B6Ng01-049J16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,899,824 - 78,900,880)(78,789,427 - 78,790,621)
sequence
gaattcctgtctcagaaagaagatgaaggacaataggaaaaggcactcga
cattgacctttgaccccacatgtgtacacatacacagacacagaaaggta
cacacagctcaggcacacaggtagctggcagagcagccatcactcacaca
tgttactttgttagggcaaattttcctgccagtcgcccctgctggttggc
cgatccttgttggagccatctgcacagactggaggacagaaattacatga
gctgttgttctctggctgacctggtcgttagagtttggatccgggtcacg
tgggactagccctgggcaggtgtggctcctgtgctgccttataaagcggg
gtgacccgaggtgtgtgttgcttcaccctgtgggccacagcgcttacagc
ccacagcgcttctgcttgctctgtctgaggtctgagtgtggatgaaagga
tctgacgcaaggacatgtgcacatgcgtgtatctcagacggttaccccca
gaaggctgagccagtccacagcgtgcctgcagtctggatggtacaggagg
cccccagtctggttctttctgcccatggatgggaagaagtgaactccggt
ttccaagcaccccagaggaggagactgtgctgacacagggggttgaagct
gatgtgttctcttcaaggaagagaacaggccttctggaaaattctgggca
ctcctggtcatgtggcagagcagctgcctccctgggtttgtgcatcatca
gtgatgtatcagtgtgtatagtggagtggaatggcccctaggtctgtccc
caaggcaggggtttcggcctactagtcaagacaggaggaacacacacggt
gtcatagtatgtgcagaggtgtttgctgtgcagactgacgagtgtgttga
tcagttctcactctggtccatttctgtgatctcaacagagtcatcattgc
tctactagcagtgcccagttctgcatcgcgtgtgctggctagtttatgtc
aatggataaaata
gaattcagagatccccctgactctgtgatttttaacttctgatcttccag
taccaagcactcccatgcttggattacaggcacataccactagcccaggg
ctttgtgtgtgctcagcaagcactccactaactgagctgcatcttcatcc
ctggggttgcccttgacagaaactttaaaatatttcctaggactcaaaaa
ttgatagagacacctagacagatagagccggagagactatgcaagggtta
agagtgcttcctgctcttccagaggaccctagctcagctttctgcatcca
gatcaggcagctcctaactatctgtaactccaactccaggaggatctgac
cctcttctgacctcctcgggcacctgcacatgtgtacacacacacacaca
cacacacacacacacccctaaaaagaaaattagataaagctgcagtggga
actaaaggaccttctctgcaacaccatgtcacagtgtcaagtatgtcttg
tggcttgctgttctggccacttccctcctcagactgtgagctccctggga
ccaggatgctcaggacgtaggagtctagtgagtttgtcaacggtgctaag
atggcaggtacaggcagcgccagccctctgtaccctgcagctccacagtt
gctgagactggatatcaacatcaatgccatccacatacctttgtgcaaac
tcttggtagtcccctggagggtcacctgaagtccctcctgcagccctcct
tggattggtccagtaaaggggatgatctgcagggggaaatagagagatat
cagttggctgacattcgcctggtgtgacagtacccagttagggccaggga
ccctgttagggcatggccaccaggactagatcccagcacacagaactagg
tccctcgtagaggcaggcccatctagtttcacggtctctgaatgatcaga
gaccacctaggtttctgagcttggccagcaggtgacctcagcctttctcc
cagtctgaggaggtgacagcctgtagacctaccgaaggaaacggctccag
taggatgagatttgggggaaggcgtctggcctcaaccaggtcacaagaac
tcaggcctgactaggactcggaggccgagaacccaattcgtttggaattc
agacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_78899824_78900880
seq2: B6Ng01-049J16.b_44_1056 (reverse)

seq1  TATTTTGTATCACATTGACATAAAACTAGCCAGCACAACGCCGGATGGCA  50
      |||||  |||| ||||||||| |||||||||||||| ||||  ||| |||
seq2  TATTT--TATC-CATTGACAT-AAACTAGCCAGCAC-ACGC--GAT-GCA  42

seq1  GAAACTGGGGCACCTGCTAGTAGGAGGCAAATGATGGACATCTTGGTATG  100
      | |||| ||||| ||||||||| |||   |||||| ||| |||  || ||
seq2  G-AACT-GGGCA-CTGCTAGTA-GAG--CAATGAT-GAC-TCT--GT-TG  81

seq1  AGGATCACCAGGAAATGGGACCCAGAGGTGAAGAAACTGAATCCAACACC  150
      | ||||||   |||||||   ||||| ||||   ||||||   ||||| |
seq2  A-GATCAC--AGAAATGG--ACCAGA-GTGA--GAACTGA--TCAACA-C  120

seq1  ACTCTGTCAGGTCCTTGCCACAGCAAACACCCTCTGCACATAACTAATGA  200
      |||| |||| |||  || ||||||||||| ||||||||||| ||| ||| 
seq2  ACTC-GTCA-GTC--TG-CACAGCAAACA-CCTCTGCACAT-ACT-ATG-  161

seq1  ACACCCTGTGTTGTTCCTCCTGTCTTTGACCTAGTAGGCCGAAACCCCTG  250
      ||||| |||| ||||||||||||| |||| ||||||||||||||||||||
seq2  ACACCGTGTG-TGTTCCTCCTGTC-TTGA-CTAGTAGGCCGAAACCCCTG  208

seq1  CCTTGGGGACAGACCCTTGGGGCCATTCCACTCCACTTATACACACTGAT  300
      ||||||||||||| ||| |||||||||||||||||| |||||||||||||
seq2  CCTTGGGGACAGA-CCTAGGGGCCATTCCACTCCAC-TATACACACTGAT  256

seq1  ACATCACTGATGATGCACAAACCCAGGGAGGCAGCTGCTCTGCCACATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCACTGATGATGCACAAACCCAGGGAGGCAGCTGCTCTGCCACATGA  306

seq1  CCAGGAGTGCCCAGAATTTTCCAGAAGGCCTGTTCTCTTCCTTGAAGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGTGCCCAGAATTTTCCAGAAGGCCTGTTCTCTTCCTTGAAGAGA  356

seq1  ACACATCAGCTTCAACCCCCTGTGTCAGCACAGTCTCCTCCTCTGGGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATCAGCTTCAACCCCCTGTGTCAGCACAGTCTCCTCCTCTGGGGTG  406

seq1  CTTGGAAACCGGAGTTCACTTCTTCCCATCCATGGGCAGAAAGAACCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAAACCGGAGTTCACTTCTTCCCATCCATGGGCAGAAAGAACCAGA  456

seq1  CTGGGGGCCTCCTGTACCATCCAGACTGCAGGCACGCTGTGGACTGGCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGGCCTCCTGTACCATCCAGACTGCAGGCACGCTGTGGACTGGCTC  506

seq1  AGCCTTCTGGGGGTAACCGTCTGAGATACACGCATGTGCACATGTCCTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTCTGGGGGTAACCGTCTGAGATACACGCATGTGCACATGTCCTTG  556

seq1  CGTCAGATCCTTTCATCCACACTCAGACCTCAGACAGAGCAAGCAGAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCAGATCCTTTCATCCACACTCAGACCTCAGACAGAGCAAGCAGAAGC  606

seq1  GCTGTGGGCTGTAAGCGCTGTGGCCCACAGGGTGAAGCAACACACACCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGGGCTGTAAGCGCTGTGGCCCACAGGGTGAAGCAACACACACCTC  656

seq1  GGGTCACCCCGCTTTATAAGGCAGCACAGGAGCCACACCTGCCCAGGGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCACCCCGCTTTATAAGGCAGCACAGGAGCCACACCTGCCCAGGGCT  706

seq1  AGTCCCACGTGACCCGGATCCAAACTCTAACGACCAGGTCAGCCAGAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCACGTGACCCGGATCCAAACTCTAACGACCAGGTCAGCCAGAGAA  756

seq1  CAACAGCTCATGTAATTTCTGTCCTCCAGTCTGTGCAGATGGCTCCAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGCTCATGTAATTTCTGTCCTCCAGTCTGTGCAGATGGCTCCAACA  806

seq1  AGGATCGGCCAACCAGCAGGGGCGACTGGCAGGAAAATTTGCCCTAACAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCGGCCAACCAGCAGGGGCGACTGGCAGGAAAATTTGCCCTAACAA  856

seq1  AGTAACATGTGTGAGTGATGGCTGCTCTGCCAGCTACCTGTGTGCCTGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACATGTGTGAGTGATGGCTGCTCTGCCAGCTACCTGTGTGCCTGAG  906

seq1  CTGTGTGTACCTTTCTGTGTCTGTGTATGTGTACACATGTGGGGTCAAAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGTACCTTTCTGTGTCTGTGTATGTGTACACATGTGGGGTCAAAG  956

seq1  GTCAATGTCGAGTGCCTTTTCCTATTGTCCTTCATCTTCTTTCTGAGACA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATGTCGAGTGCCTTTTCCTATTGTCCTTCATCTTCTTTCTGAGACA  1006

seq1  GGAATTC  1057
      |||||||
seq2  GGAATTC  1013

seq1: chr11_78789427_78790621
seq2: B6Ng01-049J16.g_66_1220

seq1  GAATTCAGAGATCCCCCTGACTCTGTGATTTTTAACTTCTGATCTTCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGATCCCCCTGACTCTGTGATTTTTAACTTCTGATCTTCCAG  50

seq1  TACCAAGCACTCCCATGCTTGGATTACAGGCACATACCACTAGCCCAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAGCACTCCCATGCTTGGATTACAGGCACATACCACTAGCCCAGGG  100

seq1  CTTTGTGTGTGCTCAGCAAGCACTCCACTAACTGAGCTGCATCTTCATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTGTGTGCTCAGCAAGCACTCCACTAACTGAGCTGCATCTTCATCC  150

seq1  CTGGGGTTGCCCTTGACAGAAACTTTAAAATATTTCCTAGGACTCAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGTTGCCCTTGACAGAAACTTTAAAATATTTCCTAGGACTCAAAAA  200

seq1  TTGATAGAGACACCTAGACAGATAGAGCCGGAGAGACTATGCAAGGGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAGAGACACCTAGACAGATAGAGCCGGAGAGACTATGCAAGGGTTA  250

seq1  AGAGTGCTTCCTGCTCTTCCAGAGGACCCTAGCTCAGCTTTCTGCATCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGCTTCCTGCTCTTCCAGAGGACCCTAGCTCAGCTTTCTGCATCCA  300

seq1  GATCAGGCAGCTCCTAACTATCTGTAACTCCAACTCCAGGAGGATCTGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGGCAGCTCCTAACTATCTGTAACTCCAACTCCAGGAGGATCTGAC  350

seq1  CCTCTTCTGACCTCCTCGGGCACCTGCACATGTGTACACACACACACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCTGACCTCCTCGGGCACCTGCACATGTGTACACACACACACACA  400

seq1  CACACACACACACACCCCTAAAAAGAAAATTAGATAAAGCTGCAGTGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACCCCTAAAAAGAAAATTAGATAAAGCTGCAGTGGGA  450

seq1  ACTAAAGGACCTTCTCTGCAACACCATGTCACAGTGTCAAGTATGTCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAGGACCTTCTCTGCAACACCATGTCACAGTGTCAAGTATGTCTTG  500

seq1  TGGCTTGCTGTTCTGGCCACTTCCCTCCTCAGACTGTGAGCTCCCTGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTGCTGTTCTGGCCACTTCCCTCCTCAGACTGTGAGCTCCCTGGGA  550

seq1  CCAGGATGCTCAGGACGTAGGAGTCTAGTGAGTTTGTCAACGGTGCTAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGATGCTCAGGACGTAGGAGTCTAGTGAGTTTGTCAACGGTGCTAAG  600

seq1  ATGGCAGGTACAGGCAGCGCCAGCCCTCTGTACCCTGCAGCTCCACAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAGGTACAGGCAGCGCCAGCCCTCTGTACCCTGCAGCTCCACAGTT  650

seq1  GCTGAGACTGGATATCAACATCAATGCCATCCACATACCTTTGTGCAAAA  700
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GCTGAGACTGGATATCAACATCAATGCCATCCACATACCTTTGTGC-AAA  699

seq1  CTCTTGGTAGTCCCCTGGAGGGTCACCTGAAGTCCCTCCTGCAGCCCTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGGTAGTCCCCTGGAGGGTCACCTGAAGTCCCTCCTGCAGCCCTCC  749

seq1  TTGGATTGGTCCAGTAAAGGGGATGATCTGCAGGGGGGAAATAGAGAGAT  800
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTGGATTGGTCCAGTAAAGGGGATGATCTGCA-GGGGGAAATAGAGAGAT  798

seq1  ATCAGTTGGCTGACATTCGCCTGGTGTGACAGTACCCAGTTAGGGCCAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTTGGCTGACATTCGCCTGGTGTGACAGTACCCAGTTAGGGCCAGG  848

seq1  GACCCTGTTAGGGCATGGCCACCAAGGAACTAGAATCCCAGCCACACAGA  900
      ||||||||||||||||||||||||  | ||||| ||||||| ||||||||
seq2  GACCCTGTTAGGGCATGGCCACCA--GGACTAG-ATCCCAG-CACACAGA  894

seq1  ACTTAGGGTCCCTCGTAGAGGCAGGCCCAATCTAGTTTCACGGTCCTTCT  950
      |||   |||||||||||||||||||||| ||||||||||||||||  |||
seq2  ACT--AGGTCCCTCGTAGAGGCAGGCCC-ATCTAGTTTCACGGTC--TCT  939

seq1  GAAATGATCAGAAGACCACC-AGGTTTCTGAGGCTTGGCCAGCAAGTGAC  999
      | ||||||||| |||||||| |||||||||| |||||||||||| |||||
seq2  G-AATGATCAG-AGACCACCTAGGTTTCTGA-GCTTGGCCAGCAGGTGAC  986

seq1  CTCAAGCCTTTATCTTCCCCAGTCTGTAGGAGGTGACAG-CTGTAGAACC  1048
      ||| ||||||| |    ||||||||| |||||||||||| |||||| |||
seq2  CTC-AGCCTTTCT----CCCAGTCTG-AGGAGGTGACAGCCTGTAG-ACC  1029

seq1  TACCAGAAGGAAACAGCATACAAGGTTAGGAATGAGAATTGTGGTGAAGG  1098
      |||| ||||||||| || | ||    |||| |||||| ||| || |||||
seq2  TACC-GAAGGAAACGGC-TCCA---GTAGG-ATGAGATTTG-GGGGAAGG  1072

seq1  CTGCTGGCCTCAACCCAAGTTCACCAAAGACCTCAGGGTCCTGACTAGGG  1148
      |  ||||||||||||  || ||||  |||| ||||||  |||||||| ||
seq2  CGTCTGGCCTCAACC--AGGTCAC--AAGAACTCAGG--CCTGACTA-GG  1115

seq1  ACTCAGGAGGCCAGAAGACCCACCATTCTGTTTTGGAATTCAAGACC  1195
      |||| ||||||| ||  |||||  ||||   |||||||||| |||||
seq2  ACTC-GGAGGCC-GAGAACCCA--ATTC--GTTTGGAATTC-AGACC  1155