BAC Information

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BAC

Clone NameB6Ng01-050H20
Chromosome11 (Build37)
Map Location 70,316,916 - 70,317,585
singlet/doubletsinglet
Overlap genenone
Upstream geneDnahc2, Efnb3, Wdr79, LOC100043030, Trp53, Atp1b2, Shbg, Sat2, LOC382532, Fxr2, Sox15, Mpdu1, Cd68, Eif4a1, Senp3, Tnfsf12-tnfsf13, Tnfsf13, Tnfsf12, LOC100041994, Polr2a, Amac1, Zbtb4, Chrnb1, Fgf11, Tmem102, 4933402P03Rik, 1700095G12Rik, Nlgn2, 1810027O10Rik, Plscr3, Tnk1, LOC432576, Kctd11, Centb1, 2810408A11Rik, 0610025P10Rik, Gps2, Eif5a, Ybx2, Slc2a4, LOC668442, Cldn7, Rai12, Dullard, Gabarap, Phf23, Dvl2, Acadvl, Dlg4, Asgr1, Asgr2, Mgl2, Mgl1, Slc16a11, Slc16a13, Bcl6b, 0610010K14Rik, D11Bwg0434e, Alox12, Alox12e, Alox15, LOC668466, Pelp1, Arrb2, Med11, Cxcl16, Zmynd15
Downstream geneTm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2, Mink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2, AI842396, Kif1c, LOC668488, Zfp3, A430084P05Rik, Rabep1, LOC668461, Nup88, Rpain, C1qbp, Dhx33, Derl2, Mis12, 6330403K07Rik, LOC382536, Nlrp1a, Nlrp1b, Nlrp1c, LOC100043249
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050H20.bB6Ng01-050H20.g
ACCDH874416DH874417
length1,280331
definitionDH874416|Mus musculus domesticus DNA, BAC clone: B6Ng01-050H20, 5' end.DH874417|Mus musculus domesticus DNA, BAC clone: B6Ng01-050H20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccagagataagccaccacacctgaatttatgtattgtcagcaact
gaacccagtttctgctgtttgcttgttggaactcagcctcctctttcagt
tatgtttgcatcagctttctgttgttgatggtctccttcactgcgttggc
ctccttgaactcattttcacaagttggaagccttgctgggtggggtcttg
ctccctttactccatttagcactaggtttttctgtaaattttttatctcc
ttgagcactggactcagctccatgacacttcttggtgctccttttctcct
cacactgtacagcttgtacttctctttggccagcttgctctttttcatta
cagagctgcagaaagtgattactaacaaccatctggcagtcagtgcgaag
ctgttttaaaatcttctctgccaacgccattaatctaaaactcttcaatt
tagcctgcagcagacttttaggacaagatcaaaaagcagccacatccccc
cccccaatatcattagaatgctctatagatcatttgttaatattcttccc
ctctgaaacatcttaagccaggcttacattgctctcagtactaccagctt
ccaagcttctatcaggatggatcagtaagaatcaataagccatgcttaaa
gtattcaactactttcccaatctaatgttcacactccatgaacaaacatt
atggtcatacccgccacaatactctagtccctggtaccatgttggtactt
ccagtgatgtgaaaagacactatgaccaagcaatttatataaaagaaagg
atttaattgtggacttgcttacagttttaaaaggttagtccattatcatt
tctgggagaaatggtggcaggcatctgctgaagatttctatattcctgat
cctcaggcagcagaaagagaaagagaaaagactagacctggcatgtttta
gtgaaatacctctccaacaagacataccccttaatccttcccaaacactt
ccactaactgggaacaagtatgcaatatgaacaaatggaagccagactca
ttccaaccagacggccagggctttgtgcacaaataggaatctgccactgg
gccttatattcttgtcctctcaaagatggcaatggtcctctgtgaacaaa
ggtatcaacaacacacttggaaaagcgacttggctgctgtcatgttataa
catgaaatcggccaaactggatccaagaccgtaacagtatagagaggact
tcatgtagagtaagtagaatacacggtgta
actttgtaaaccatgctggcctctaactcacagaaatctgcctgcttctg
cctcctgagtgctgggattaaaggcatgcaccaccatgcacggcctagtt
ctagaccttatttataatcatctctggaaataaaagaaattgaaattacc
accccactcttatccaaaccaaacggggcaatatattatttccacttctt
cctcttccctcttcctcttcctctcctcctcctcctcctccttcttcttt
tttaaagacagtgtttctctgtatagccctggctgtcctggaacttactt
tgtagaccaggctggcctcgaactcagaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_70316916_70317585
seq2: B6Ng01-050H20.g_115_405 (reverse)

seq1  ATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGC  50
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTAAGTTCCAGGACAGC  50

seq1  CAGGGCTACACAGAGAAACCCTGTCTCGGAAAAAAAAAAAAGAGAGAGAG  100
      |||||||| |||||||||| ||||||   |||                  
seq2  CAGGGCTATACAGAGAAACACTGTCTTTAAAA------------------  82

seq1  AGAGAAAGAAAAGAAAAATGAGTCGGGGGCAGGTGAATCTTTGTGAGTTT  150
                                                        
seq2  --------------------------------------------------  82

seq1  GAAGCCAGCCTGGTGTCCATAGCAAGTCCCAGGCCATCTGTGTCTACATA  200
                                                        
seq2  --------------------------------------------------  82

seq1  CTAAGACTCTGCCAAGAAGAAGGAGGAGGAGGACAAATGAAGAAAGAAAG  250
                   |||||||||||||||||||                  
seq2  -------------AAGAAGAAGGAGGAGGAGG------------------  101

seq1  AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA  300
                                || | || || |||  || |||| 
seq2  --------------------------AGGAGGAGAGGAAG--AGGAAGAG  123

seq1  GGAAAGAAGAGAGTGTGAGAGAAAGAGAGAAAGAAAAGGAAGAAAAAGCA  350
      |||                      |||| |||||  ||||         
seq2  GGA----------------------AGAGGAAGAAGTGGAA---------  142

seq1  AAAGAAAGAAAAAAAGCAAGCCCCCACTGTTAAATCACCTGTAATATCAA  400
                                               ||||||   
seq2  ----------------------------------------ATAATAT---  149

seq1  TCCTATGGGATCTAATTTCCTCCTTTAGCTTTTGCAGACCTGAGGCACAC  450
                    ||| || | ||| |  ||||                
seq2  --------------ATTGCCCCGTTTGG--TTTG----------------  167

seq1  AAGTGCTTCACAGATATGCATGTGGGCAAAATACTCACACACATAAAACT  500
                  |||| |  || ||    |||                  
seq2  ------------GATAAGAGTGGGGTGGTAAT------------------  187

seq1  GAAATTAAATAGAAAGAAAATGGGACCATCTTGGCTCATATAGCCATCAC  550
          || |||                  |||                   
seq2  ----TTCAAT-----------------TTCT-------------------  197

seq1  TGTATCACCAGAGACAGAGTCCACTCTGAGAAACAGAAAAGGGCGCGCAG  600
      | |||  |||||||            |||   | | | |||| |  |   
seq2  TTTATTTCCAGAGA------------TGA-TTATAAATAAGGTCTAG---  231

seq1  AAACAAAATTTAAGAGCTGGGCAGTGGTGGCACATACCTTTAATCCCAGC  650
       ||| |         || | ||| ||||||  ||| ||||||||||||||
seq2  -AACTA--------GGCCGTGCA-TGGTGGTGCATGCCTTTAATCCCAGC  271

seq1  ACTCAGGAGGCAGAGGCAGG  670
      |||||||||||||| |||||
seq2  ACTCAGGAGGCAGAAGCAGG  291