BAC Information

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BAC

Clone NameB6Ng01-050I18
Chromosome11 (Build37)
Map Location 37,171,634 - 37,282,333
singlet/doubletdoublet
Overlap genenone
Upstream geneOdz2
Downstream geneLOC100039148, LOC276941
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050I18.bB6Ng01-050I18.g
ACCDH874456DH874457
length723215
definitionDH874456|Mus musculus domesticus DNA, BAC clone: B6Ng01-050I18, 5' end.DH874457|Mus musculus domesticus DNA, BAC clone: B6Ng01-050I18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,171,634 - 37,172,353)(37,282,119 - 37,282,333)
sequence
gaattcagagatgctaggcttttatcctgcttctagctatcatgtggcct
catgtgagaagtcagcgctttttctaagtaagagcagtttgtaagtacct
gttatccccattttacaaatggacaaatatattcaggaacataaaataac
ccaccatagtttcagtgctagagagcagtggcagagacactcaaatcctt
ttctgtatcgctacagaaaaccaattctatgacataacaatcggtccatt
ccttgacctgtcaaagggtttggaatcacttaagctacttaggaagtgac
aggaaccaaagtctttttaaaagttagagctgaactttgctccccccccc
ctgcacactaggatatctattttagatatttgcatcccgtttttgaggtg
ataatactgaaatcaatgtgtgaaaaaggactgcactttcttgtgcacat
atcaatgtacatggcatgaactgcaagtgcattgtagtggtgtgtgtagg
ggggagaagatgagaagtaaaaagaaatcctatagtacaatataactgtt
gccatctgcctaattctataagttatttttgagttcctgttggatgctca
tttctgctgcactgtagaaattggaacccacctgtcacacagctacccta
gaacttgattagaattgctgatggagactgaaagacatgccttttcactt
aagatactttgacagtgcctcaa
tttttccctcttaataatttagaatacctaatagctctgaaatacatgct
aaggaaatattctgggaagcaacaagacaacatgtcttttaatgggctgt
ttattgttaatttacaatgtaagtatagagtgattttcaggattatttaa
aaggaacgatcagcttttaagagtttatgttatttattttaaaactctgt
gtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_37171634_37172353
seq2: B6Ng01-050I18.b_42_764

seq1  GAATTCAGAGATGCTAGGCTTTTATCCTGCTTCTAGCTATCATGTGGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGATGCTAGGCTTTTATCCTGCTTCTAGCTATCATGTGGCCT  50

seq1  CATGTGAGAAGTCAGCGCTTTTTCTAAGTAAGAGCAGTTTGTAAGTACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGAGAAGTCAGCGCTTTTTCTAAGTAAGAGCAGTTTGTAAGTACCT  100

seq1  GTTATCCCCATTTTACAAATGGACAAATATATTCAGGAACATAAAATAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCCCCATTTTACAAATGGACAAATATATTCAGGAACATAAAATAAC  150

seq1  CCACCATAGTTTCAGTGCTAGAGAGCAGTGGCAGAGACACTCAAATCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCATAGTTTCAGTGCTAGAGAGCAGTGGCAGAGACACTCAAATCCTT  200

seq1  TTCTGTATCGCTACAGAAAACCAATTCTATGACATAACAATCGGTCCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTATCGCTACAGAAAACCAATTCTATGACATAACAATCGGTCCATT  250

seq1  CCTTGACCTGTCAAAGGGTTTGGAATCACTTAAGCTACTTAGGAAGTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGACCTGTCAAAGGGTTTGGAATCACTTAAGCTACTTAGGAAGTGAC  300

seq1  AGGAACCAAAGTCTTTTTAAAAGTTAGAGCTGAACTTTGCTCCCCCCCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACCAAAGTCTTTTTAAAAGTTAGAGCTGAACTTTGCTCCCCCCCCC  350

seq1  CTGCACACTAGGATATCTATTTTAGATATTTGCATCCCGTTTTTGAGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACACTAGGATATCTATTTTAGATATTTGCATCCCGTTTTTGAGGTG  400

seq1  ATAATACTGAAATCAATGTGTGAAAAAGGACTGCACTTTCTTGTGCACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATACTGAAATCAATGTGTGAAAAAGGACTGCACTTTCTTGTGCACAT  450

seq1  ATCAATGTACATGGCATGAACTGCAAGTGCATTGTAGTGGTGTGTGTAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATGTACATGGCATGAACTGCAAGTGCATTGTAGTGGTGTGTGTAGG  500

seq1  GGGGAGAAGATGAGAAGTAAAAAGAAATCCTATAGTACAATATAACTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGAAGATGAGAAGTAAAAAGAAATCCTATAGTACAATATAACTGTT  550

seq1  GCCATCTGCCTAATTCTATAAGTTA-TTTTGAGTTCCTGTTGGATGCTCA  599
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GCCATCTGCCTAATTCTATAAGTTATTTTTGAGTTCCTGTTGGATGCTCA  600

seq1  TTTCTGCTGCACTGTAGAAA-TGGAACCCACCTGTCACACAGCTACCCTA  648
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTTCTGCTGCACTGTAGAAATTGGAACCCACCTGTCACACAGCTACCCTA  650

seq1  GAAC-TGATTAGAATAGCTGATGGAGACTGAAAGACATGCCTTTTGCACC  697
      |||| |||||||||| ||||||||||||||||||||||||||||| ||| 
seq2  GAACTTGATTAGAATTGCTGATGGAGACTGAAAGACATGCCTTTT-CACT  699

seq1  TAAGATAC-TTGACAGTGTCTCAA  720
      |||||||| ||||||||| |||||
seq2  TAAGATACTTTGACAGTGCCTCAA  723

seq1: chr11_37282119_37282333
seq2: B6Ng01-050I18.g_71_285 (reverse)

seq1  CACACACACACACACACAGAGTTTTAAAATAAATAACATAAACTCTTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACAGAGTTTTAAAATAAATAACATAAACTCTTAAA  50

seq1  AGCTGATCGTTCCTTTTAAATAATCCTGAAAATCACTCTATACTTACATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGATCGTTCCTTTTAAATAATCCTGAAAATCACTCTATACTTACATT  100

seq1  GTAAATTAACAATAAACAGCCCATTAAAAGACATGTTGTCTTGTTGCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATTAACAATAAACAGCCCATTAAAAGACATGTTGTCTTGTTGCTTC  150

seq1  CCAGAATATTTCCTTAGCATGTATTTCAGAGCTATTAGGTATTCTAAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAATATTTCCTTAGCATGTATTTCAGAGCTATTAGGTATTCTAAATT  200

seq1  ATTAAGAGGGAAAAA  215
      |||||||||||||||
seq2  ATTAAGAGGGAAAAA  215