BAC Information

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BAC

Clone NameB6Ng01-050J14
Chromosome11 (Build37)
Map Location 120,780,375 - 120,921,176
singlet/doubletdoublet
Overlap geneCcdc57, Slc16a3, Csnk1d, Cd7, Sectm1b
Upstream geneChmp6, Baiap2, Aatk, Azi1, 2410002I01Rik, 1810043H04Rik, 1810073N04Rik, 2810410L24Rik, LOC100042332, LOC100043384, LOC100043389, Bahcc1, Actg1, Fscn2, 2310003H01Rik, Nploc4, Tspan10, Pde6g, 1810049H13Rik, 3110023B02Rik, 2600005N12Rik, Hgs, Mrpl12, Slc25a10, LOC667716, Gcgr, BC003940, Dysfip1, P4hb, Arhgdia, LOC100042371, Thoc4, Anapc11, Npb, Pcyt2, Sirt7, Mafg, Pycr1, 1110012N22Rik, 5730593N15Rik, Aspscr1, Stra13, Lrrc45, Rac3, Dcxr, Cbr2, Hmga1-rs1, LOC667778, Rfng, Gps1, Dus1l, Fasn, LOC100043454
Downstream geneSectm1a, LOC637008, 4921530G04Rik, Tex19, Uts2r, 1110031I02Rik, Hexdc, BC017643, Narf, Foxk2, Wdr45l, Rab40b, BC032265, Fn3k, Tbcd, Zfp750, B3gntl1, Metrnl, Ptchd3, LOC667879, LOC674842
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050J14.bB6Ng01-050J14.g
ACCDH874496DH874497
length1,071969
definitionDH874496|Mus musculus domesticus DNA, BAC clone: B6Ng01-050J14, 5' end.DH874497|Mus musculus domesticus DNA, BAC clone: B6Ng01-050J14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,780,375 - 120,781,456)(120,920,184 - 120,921,176)
sequence
gaattcatccagtctgatgaaggccagagaacactcctttgatctctgct
tgagtcctgacctcatctctcctgcctttacagggtggagctccagtttc
tagggcctttgggtttagatataaccaaggtagatagtggggtggcctcc
aagacctccaaggtcagctccctggtaagtgtgcctatgcacatctatgc
atcttcacttccctggaaacttttgattggtgcatgagaaagaatacatt
gggagatctggacacctctcacagcattcaaccaagccctacacatagat
cagcccaaggatccactcctcctgggagagcactcagtgaacctctcacc
atgtagatttcaaaccagttggcaaggagtgccccaaagaaccaacccca
gcgatgttctacctgtctctgcagagcaagttcaccatcgagttccttca
gttttcgctccagttcccactccaggcgctcattctgttcccgctggtgg
gccagttcgctgttcttgtcactgtggtaagcagacagggtgttgagaga
gccatctactgaatgctcactgcctgtacacacagcgggagcacctcacc
catggagctgggacatggcatttgcaggggtgcatgcatcgggcctctaa
gaagtaggacttctgcctgacctgaacctgcctgccacccctaaacaaag
ctgccaacagcacaggagaaaacagaacatagaattgtgttgacaaacaa
gaatcaagagaaagaagccgggtgtggtggcgcacgcctttaatcccagc
acttgggaagcagaggcaggtagatttctgagttcggggccagcctggtt
tacagagtaagttccaggacagccagagctacacggagaaaccctgtctc
aaaaatcagaaaaaaaaaaaaaaaggatcagagagggccaggcatggtgg
tacaacatctttatcccagcacttagaggcaaaggctgatctctggtgtc
aaagcacttactgtacatagtggattcaggccagtcaggactatataatt
ttgaaatggaggggtataact
gaattctcgatcctccttttctttcccaagtcctcattgtttccctgttt
tttctcagaaagggaagtacacagtgctggaggtggacatagccacaggc
cagacttgaggccattggccgggtctgctgtgagtgccggctctcaaaat
ccagagagcccggtcactgacatctgtatgccatgacccagggtgccact
ctctgggctgagctggagctagactctcagaaggtcagggctgacaaggg
acaaatggcagaatatgcacactggagggtgaactcaaacacaggcctct
tagagcccagaggatccatctgacctggtggaaagagagtatctacctgt
gattctcagacagaaggtccaaaacacccaaagaagaaaagcatagacta
taatgttgtctggggttctggtgaagacaaaactcctctgtatgaagggg
cccagggctcagagagggaaagactgatggattgatgtttcttctacccc
cttgactgggctgctcccaaatccatttctaactgggttgctaagagagg
cgaagttaggctaccggagagaaagaggggctagccatccaatttcagaa
acagctttaagaactgggaagtgtcccaagggacagctcaatgcttgcca
ttttctctggtagccaatctcagtccaccgggcacttgtgtccacagggc
aaccaaaggtcaccttaaagtcagggcaacctgcccagctttaatgaggc
caggaacaagaagctgggacccatacttcagtccttctgggaaggaatct
tggtctactgtggggtttcaccatactgtggtttcacttagtcactgact
gtgtgctgaccgacagagacatagtgacataacaagcatagcacactcag
cagaggtactgagagtagagagatgagcatgacatctgggctctcctgtg
atgactcatggaagcatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_120780375_120781456
seq2: B6Ng01-050J14.b_45_1115

seq1  GAATTCATCCAGTCTGATGAAGGCCAGAGAACACTCCTTTGATCTCTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCCAGTCTGATGAAGGCCAGAGAACACTCCTTTGATCTCTGCT  50

seq1  TGAGTCCTGACCTCATCTCTCCTGCCTTTACAGGGTGGAGCTCCAGTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCCTGACCTCATCTCTCCTGCCTTTACAGGGTGGAGCTCCAGTTTC  100

seq1  TAGGGCCTTTGGGTTTAGATATAACCAAGGTAGATAGTGGGGTGGCCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGCCTTTGGGTTTAGATATAACCAAGGTAGATAGTGGGGTGGCCTCC  150

seq1  AAGACCTCCAAGGTCAGCTCCCTGGTAAGTGTGCCTATGCACATCTATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCTCCAAGGTCAGCTCCCTGGTAAGTGTGCCTATGCACATCTATGC  200

seq1  ATCTTCACTTCCCTGGAAACTTTTGATTGGTGCATGAGAAAGAATACATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCACTTCCCTGGAAACTTTTGATTGGTGCATGAGAAAGAATACATT  250

seq1  GGGAGATCTGGACACCTCTCACAGCATTCAACCAAGCCCTACACATAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGATCTGGACACCTCTCACAGCATTCAACCAAGCCCTACACATAGAT  300

seq1  CAGCCCAAGGATCCACTCCTCCTGGGAGAGCACTCAGTGAACCTCTCACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCAAGGATCCACTCCTCCTGGGAGAGCACTCAGTGAACCTCTCACC  350

seq1  ATGTAGATTTCAAACCAGTTGGCAAGGAGTGCCCCAAAGAACCAACCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGATTTCAAACCAGTTGGCAAGGAGTGCCCCAAAGAACCAACCCCA  400

seq1  GCGATGTTCTACCTGTCTCTGCAGAGCAAGTTCACCATCGAGTTCCTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGATGTTCTACCTGTCTCTGCAGAGCAAGTTCACCATCGAGTTCCTTCA  450

seq1  GTTTTCGCTCCAGTTCCCACTCCAGGCGCTCATTCTGTTCCCGCTGGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCGCTCCAGTTCCCACTCCAGGCGCTCATTCTGTTCCCGCTGGTGG  500

seq1  GCCAGTTCGCTGTTCTTGTCACTGTGGTAAGCAGACAGGGTGTTGAGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTTCGCTGTTCTTGTCACTGTGGTAAGCAGACAGGGTGTTGAGAGA  550

seq1  GCCATCTACTGAATGCTCACTGCCTGTACACACAGCGGGAGCACCTCACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCTACTGAATGCTCACTGCCTGTACACACAGCGGGAGCACCTCACC  600

seq1  CATGGAGCTGGGACATGGCATTTGCAGGGGTGCATGCATCGGGCCTCTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAGCTGGGACATGGCATTTGCAGGGGTGCATGCATCGGGCCTCTAA  650

seq1  GAAGTAGGACTTCTGCCTGACCTGAACCTGCCTGCCACCCCTAAACAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAGGACTTCTGCCTGACCTGAACCTGCCTGCCACCCCTAAACAAAG  700

seq1  CTGCCAACAGCACAGGAGAAAACAGAACATAGAATTGTGTTGACAAACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAACAGCACAGGAGAAAACAGAACATAGAATTGTGTTGACAAACAA  750

seq1  GAATCAAGAGAAAGAAGCCGGGTGTGGTGGCGCACGCCTTTAATCCCAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAAGAGAAAGAAGCCGGGTGTGGTGGCGCACGCCTTTAATCCCAGC  800

seq1  ACTTGGGAAGCAGAGGCAGGTAGATTTCTGAGTTCGGGGCCAGCCTGGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ACTTGGGAAGCAGAGGCAGGTAGATTTCTGAGTTCGGGGCCAGCCTGGTT  850

seq1  TACAGAGTAAGTTCCAGGACAGCCAGAGCTACACGGAGAAACCCTGTCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGTAAGTTCCAGGACAGCCAGAGCTACACGGAGAAACCCTGTCTC  900

seq1  AAAAAACCAGAAAAAAAAAAAAAAAGAATCAAGAGAAGGGCCAGGCATGG  950
       ||||| ||||||||||||||||||| ||| |||| ||||||||||||||
seq2  -AAAAATCAGAAAAAAAAAAAAAAAGGATC-AGAG-AGGGCCAGGCATGG  947

seq1  TGGTAC-ACACCTTTAATCCCAGCACTTAGGAGGCAAACAGGCTGATCTC  999
      |||||| ||| |||| ||||||||||||| |||||||  |||||||||||
seq2  TGGTACAACATCTTT-ATCCCAGCACTTA-GAGGCAA--AGGCTGATCTC  993

seq1  TGTGTTCAAAGCCAACCTACTGTACATAGTGAATTCCAGGCCAGTCAGGA  1049
      ||   |||||||  || |||||||||||||| ||| ||||||||||||||
seq2  TGGTGTCAAAGC--ACTTACTGTACATAGTGGATT-CAGGCCAGTCAGGA  1040

seq1  CTATATAATTATGAAATGGAGGGGTTAATAACT  1082
      |||||||||| ||||||||||||||  ||||||
seq2  CTATATAATTTTGAAATGGAGGGGT--ATAACT  1071

seq1: chr11_120920184_120921176
seq2: B6Ng01-050J14.g_67_1035 (reverse)

seq1  TCATGCTCTCCATGAGGTCATCACAGTGAGAGCCCCAGATGGTTCAATGC  50
      ||||||| ||||||| |||||||||| ||||| ||||||||  || ||||
seq2  TCATGCT-TCCATGA-GTCATCACAG-GAGAG-CCCAGATG--TC-ATGC  43

seq1  TCATCTCTCTTACTCTCAGGTACCTCTGCTTGGAGTGGTGCTATGGCTTT  100
      ||||||||| |||||||| |||||||||||  |||| ||||||||   ||
seq2  TCATCTCTC-TACTCTCA-GTACCTCTGCT--GAGT-GTGCTATG--CTT  86

seq1  GTTATGGTCACTATGGTTCTCTGGTCGGTCAGGCACCACAGTCAAGTGAC  150
      ||||| |||||||||  ||||| |||||||| ||| ||||||| ||||||
seq2  GTTAT-GTCACTATG--TCTCT-GTCGGTCA-GCA-CACAGTC-AGTGAC  129

seq1  TAAGTGAAAACCACAGTATGGTGAAACCCCACAGTAGACCAAGATTCCTT  200
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTG-AAACCACAGTATGGTGAAACCCCACAGTAGACCAAGATTCCTT  178

seq1  CCCAGAAGGACTGAAGGTATGGGTCCCAGCTTCTTGTTCCTGGCCTCATT  250
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CCCAGAAGGACTGAA-GTATGGGTCCCAGCTTCTTGTTCCTGGCCTCATT  227

seq1  AAAGCTGGGCAGGTTGCCCTGACTTTAAGGTGACCTTTGGTTTGCCCTGT  300
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AAAGCTGGGCAGGTTGCCCTGACTTTAAGGTGACCTTTGG-TTGCCCTGT  276

seq1  GGACACAAGTGCCCGGTGGACTGAGATTGGCTACCAGAGAAAATGGCAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACAAGTGCCCGGTGGACTGAGATTGGCTACCAGAGAAAATGGCAAG  326

seq1  CATTGAGCTGTCCCTTGGGACACTTCCCAGTTCTTAAAGCTGTTTCTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAGCTGTCCCTTGGGACACTTCCCAGTTCTTAAAGCTGTTTCTGAA  376

seq1  ATTGGATGGCTAGCCCCTCTTTCTCTCCGGTAGCCTAACTTCGCCTCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGATGGCTAGCCCCTCTTTCTCTCCGGTAGCCTAACTTCGCCTCTCT  426

seq1  TAGCAACCCAGTTAGAAATGGATTTGGGAGCAGCCCAGTCAAGGGGGTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAACCCAGTTAGAAATGGATTTGGGAGCAGCCCAGTCAAGGGGGTAG  476

seq1  AAGAAACATCAATCCATCAGTCTTTCCCTCTCTGAGCCCTGGGCCCCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACATCAATCCATCAGTCTTTCCCTCTCTGAGCCCTGGGCCCCTTC  526

seq1  ATACAGAGGAGTTTTGTCTTCACCAGAACCCCAGACAACATTATAGTCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGAGGAGTTTTGTCTTCACCAGAACCCCAGACAACATTATAGTCTA  576

seq1  TGCTTTTCTTCTTTGGGTGTTTTGGACCTTCTGTCTGAGAATCACAGGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTCTTCTTTGGGTGTTTTGGACCTTCTGTCTGAGAATCACAGGTA  626

seq1  GATACTCTCTTTCCACCAGGTCAGATGGATCCTCTGGGCTCTAAGAGGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTCTCTTTCCACCAGGTCAGATGGATCCTCTGGGCTCTAAGAGGCC  676

seq1  TGTGTTTGAGTTCACCCTCCAGTGTGCATATTCTGCCATTTGTCCCTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTGAGTTCACCCTCCAGTGTGCATATTCTGCCATTTGTCCCTTGT  726

seq1  CAGCCCTGACCTTCTGAGAGTCTAGCTCCAGCTCAGCCCAGAGAGTGGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCTGACCTTCTGAGAGTCTAGCTCCAGCTCAGCCCAGAGAGTGGCA  776

seq1  CCCTGGGTCATGGCATACAGATGTCAGTGACCGGGCTCTCTGGATTTTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGGTCATGGCATACAGATGTCAGTGACCGGGCTCTCTGGATTTTGA  826

seq1  GAGCCGGCACTCACAGCAGACCCGGCCAATGGCCTCAAGTCTGGCCTGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCGGCACTCACAGCAGACCCGGCCAATGGCCTCAAGTCTGGCCTGTG  876

seq1  GCTATGTCCACCTCCAGCACTGTGTACTTCCCTTTCTGAGAAAAAACAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGTCCACCTCCAGCACTGTGTACTTCCCTTTCTGAGAAAAAACAGG  926

seq1  GAAACAATGAGGACTTGGGAAAGAAAAGGAGGATCGAGAATTC  993
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAATGAGGACTTGGGAAAGAAAAGGAGGATCGAGAATTC  969