BAC Information

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BAC

Clone NameB6Ng01-051J15
Chromosome11 (Build37)
Map Location 80,289,700 - 80,416,482
singlet/doubletdoublet
Overlap geneCdk5r1, Myo1d
Upstream geneNf1, Omg, Evi2b, Evi2a, Rab11fip4, OTTMUSG00000000185, LOC432584, Utp6, ENSMUSG00000072631, Suz12, Crlf3, Atad5, 1110002N22Rik, Centa2, Rnf135, Rhot1, Rhbdl3, 5730455P16Rik, Zfp207, LOC100043601, LOC100042726, Psmd11
Downstream geneTmem98, Spaca3, Accn1, 1700071K01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-051J15.bB6Ng01-051J15.g
ACCDH875192DH875193
length757831
definitionDH875192|Mus musculus domesticus DNA, BAC clone: B6Ng01-051J15, 5' end.DH875193|Mus musculus domesticus DNA, BAC clone: B6Ng01-051J15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,289,700 - 80,290,457)(80,415,654 - 80,416,482)
sequence
gaattctctcaggttcggagttgggagtctgagttaagatacaggttggc
ttatttgacaatttgggtctccagaaccagtccagaatgaatgacttgta
attcggcagtggcctttgtgaaggacatggaggctgattgtgaactatgt
gtcggtagtcagaaccagattttcttgcaattttactgtcatcaagtttt
aaaatgggcaaataagaaactggcctaaaggcgcagcagcttcaattttg
acagcctccgtgataggatctctaggccgccctcatccttctggcctggc
tttcctagagtcttaatgggtgccgggcttttacgctgatgctgattgcg
gctcttcctttctccagcgcccgggccagctctccgcaccgcccgcagcc
tctgccaagggggccgcggcgggaacaaaggcagcacgtgtctgggcggg
gcccgccctccgccccgcccgccccctcgccctcccgcccgccctcccgc
ctggagagctccgctgcgcggcgccggagctcacgaggccgggctccgcg
cgcggcgcaggcaccttccaggtggagacccggcttcgcgcgttcccgcc
gcccgcgccgtgtcccgtaatgggcgcgcccactataggcgccaccgtgc
gccgctcgcgctgagggacgcgagtggcggcgacctggcggcgagaccga
gcgggcgtgtggaccgcgcgcgcgatccggagaggcggcttgcaagcgcg
cgcctgg
gaattcaggggcacagatggggattcaagaggaattacaggaaccctggg
ggaggctggagaagccgtactgtgagctttgaattcgcggttgaaaccag
agggaaatgacacaagccaccgaaggataggactgggtgattaaggcaca
gcggtgactagcaagggatctgggggtagcattcggcaaagagagtatgg
ttagtcatctgaggtcacagagcctctgtggcagaaaagaacagaaaggg
gcacatactggaaacagtaggaaagaaaacaaattcagtgattgagagaa
agagtcagagaagggcccttgatcagtcaaagattacattaaattcggct
ttctcaaaagattgtaaactaggagtacctggatacaggagcttgaaaag
atctaagtatctctgatgtgatgcttggacagatttggtgtttgtatatt
gtctgattatcaagtgctgaagcccagggaaacttaatgtgatcctgatg
gtctcttcggccctctccccaggggtgaatatactaagttctcacgactg
tatcgtgcctaggaaaagctggagcgtaggctttgtgtaaatccacttag
cgccggtgtgctatctgtgtgaagctgcatttctgaagcactgtagatgc
ttacggcatttggctctgactcatcttacttgacttcagctttcctaaaa
tatttatccatctacagatacttgcattttggtttccttcattttgtgat
aataaagttaaaacaaaactgcttttaaataccacacacacttctctata
aaattatgattggctggggagtgggggtgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_80289700_80290457
seq2: B6Ng01-051J15.b_44_800

seq1  GAATTCTCTCAGGTTCGGAGTTGGGAGTCTGAGTTAAGATACAGGTTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCAGGTTCGGAGTTGGGAGTCTGAGTTAAGATACAGGTTGGC  50

seq1  TTATTTGACAATTTGGGTCTCCAGAACCAGTCCAGAATGAATGACTTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGACAATTTGGGTCTCCAGAACCAGTCCAGAATGAATGACTTGTA  100

seq1  ATTCGGCAGTGGCCTTTGTGAAGGACATGGAGGCTGATTGTGAACTATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGGCAGTGGCCTTTGTGAAGGACATGGAGGCTGATTGTGAACTATGT  150

seq1  GTCGGTAGTCAGAACCAGATTTTCTTGCAATTTTACTGTCATCAAGTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGGTAGTCAGAACCAGATTTTCTTGCAATTTTACTGTCATCAAGTTTT  200

seq1  AAAATGGGCAAATAAGAAACTGGCCTAAAGGCGCAGCAGCTTCAATTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGGCAAATAAGAAACTGGCCTAAAGGCGCAGCAGCTTCAATTTTG  250

seq1  ACAGCCTCCGTGATAGGATCTCTAGGCCGCCCTCATCCTTCTGGCCTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCTCCGTGATAGGATCTCTAGGCCGCCCTCATCCTTCTGGCCTGGC  300

seq1  TTTCCTAGAGTCTTAATGGGTGCCGGGCTTTTACGCTGATGCTGATTGCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTAGAGTCTTAATGGGTGCCGGGCTTTTACGCTGATGCTGATTGCG  350

seq1  GCTCTTCCTTTCTCCAGCGCCCGGGCCAGCTCTCCGCACCGCCCGCAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTCCTTTCTCCAGCGCCCGGGCCAGCTCTCCGCACCGCCCGCAGCC  400

seq1  TCTGCCAAGGGGGCCGCGGCGGGAACAAAGGCAGCACGTGTCTGGGCGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCAAGGGGGCCGCGGCGGGAACAAAGGCAGCACGTGTCTGGGCGGG  450

seq1  GCCCGCCCTCCGCCCCGCCCGCCCCCTCGCCCTCCCGCCCGCCCTCCCGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGCCCTCCGCCCCGCCCGCCCCCTCGCCCTCCCGCCCGCCCTCCCGC  500

seq1  CTGGAGAGCTCCGCTGCGCGGCGCCGGAGCTCACGAGGCCGGGCTCCGCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGAGCTCCGCTGCGCGGCGCCGGAGCTCACGAGGCCGGGCTCCGCG  550

seq1  CGCGGCGCAGGCACCTTCCAGGTGGAGACCCGGCTTCGCGCGTTCCCGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGGCGCAGGCACCTTCCAGGTGGAGACCCGGCTTCGCGCGTTCCCGCC  600

seq1  GCCCGCGCCGTGTCCCGTAATGGGCGCGCCCACTAGAGGCGCCACCGTGC  650
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GCCCGCGCCGTGTCCCGTAATGGGCGCGCCCACTATAGGCGCCACCGTGC  650

seq1  GCCGCTCGCGCTGAGGGACGCGAGTGGCGGCGACCTGGCGGCGAGACCGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGCTCGCGCTGAGGGACGCGAGTGGCGGCGACCTGGCGGCGAGACCGA  700

seq1  GCGGGCGTGTGGACCGCGCGCGCGATCCGGAGAGGCGGCTTGCAAGGCGC  750
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GCGGGCGTGTGGACCGCGCGCGCGATCCGGAGAGGCGGCTTGCAA-GCGC  749

seq1  GCGCCGGG  758
      ||||| ||
seq2  GCGCCTGG  757

seq1: chr11_80415654_80416482
seq2: B6Ng01-051J15.g_63_892 (reverse)

seq1  TCACCCCCACTCCCCAGCCAATCATAATTTTATAGAGAAGTGTGTGTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCCCACTCCCCAGCCAATCATAATTTTATAGAGAAGTGTGTGTGGT  50

seq1  ATTT-AAAGCAGTTTTGTTTTAACTTTATTATCACAAAATGAAGGAAACC  99
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAAGCAGTTTTGTTTTAACTTTATTATCACAAAATGAAGGAAACC  100

seq1  AAAATGCAAGTATCTGTAGATGGATAAATATTTTAGGAAAGCTGAAGTCA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGCAAGTATCTGTAGATGGATAAATATTTTAGGAAAGCTGAAGTCA  150

seq1  AGTAAGATGAGTCAGAGCCAAATGCCGTAAGCATCTACAGTGCTTCAGAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGATGAGTCAGAGCCAAATGCCGTAAGCATCTACAGTGCTTCAGAA  200

seq1  ATGCAGCTTCACACAGATAGCACACCGGCGCTAAGTGGATTTACACAAAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGCTTCACACAGATAGCACACCGGCGCTAAGTGGATTTACACAAAG  250

seq1  CCTACGCTCCAGCTTTTCCTAGGCACGATACAGTCGTGAGAACTTAGTAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACGCTCCAGCTTTTCCTAGGCACGATACAGTCGTGAGAACTTAGTAT  300

seq1  ATTCACCCCTGGGGAGAGGGCCGAAGAGACCATCAGGATCACATTAAGTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACCCCTGGGGAGAGGGCCGAAGAGACCATCAGGATCACATTAAGTT  350

seq1  TCCCTGGGCTTCAGCACTTGATAATCAGACAATATACAAACACCAAATCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGGCTTCAGCACTTGATAATCAGACAATATACAAACACCAAATCT  400

seq1  GTCCAAGCATCACATCAGAGATACTTAGATCTTTTCAAGCTCCTGTATCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAAGCATCACATCAGAGATACTTAGATCTTTTCAAGCTCCTGTATCC  450

seq1  AGGTACTCCTAGTTTACAATCTTTTGAGAAAGCCGAATTTAATGTAATCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACTCCTAGTTTACAATCTTTTGAGAAAGCCGAATTTAATGTAATCT  500

seq1  TTGACTGATCAAGGGCCCTTCTCTGACTCTTTCTCTCAATCACTGAATTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTGATCAAGGGCCCTTCTCTGACTCTTTCTCTCAATCACTGAATTT  550

seq1  GTTTTCTTTCCTACTGTTTCCAGTATGTGCCCCTTTCTGTTCTTTTCTGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTTTCCTACTGTTTCCAGTATGTGCCCCTTTCTGTTCTTTTCTGC  600

seq1  CACAGAGGCTCTGTGACCTCAGATGACTAACCATACTCTCTTTGCCGAAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGGCTCTGTGACCTCAGATGACTAACCATACTCTCTTTGCCGAAT  650

seq1  GCTACCCCCAGATCCCTTGCTAGTCACCGCTGTGCCTTAATCACCCAGTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCCCCAGATCCCTTGCTAGTCACCGCTGTGCCTTAATCACCCAGTC  700

seq1  CTATCCTTCGGTGGCTTGTGTCATTTCCCTCTGGTTTCAACCGCGAATTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCTTCGGTGGCTTGTGTCATTTCCCTCTGGTTTCAACCGCGAATTC  750

seq1  AAAGCTCACAGTACGGCTTCTCCAGCCTCCCCCAGGGTTCCTGTAATTCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTCACAGTACGGCTTCTCCAGCCTCCCCCAGGGTTCCTGTAATTCC  800

seq1  TCTTGAATCCCCATCTGTGCCCCTGAATTC  829
      ||||||||||||||||||||||||||||||
seq2  TCTTGAATCCCCATCTGTGCCCCTGAATTC  830