BAC Information

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BAC

Clone NameB6Ng01-052M21
Chromosome11 (Build37)
Map Location 82,679,471 - 82,804,651
singlet/doubletdoublet
Overlap geneRffl, Rad51l3, Fndc8, Nle1, Unc45b, Slfn5, Set8-ps, Slfn9
Upstream geneAccn1, 5530401A14Rik, Ccl2, Ccl7, Ccl11, Ccl12, Ccl8, Ccl1, Tmem132e, Cct6b, Ccdc16, Lig3
Downstream geneSlfn8, LOC668706, Slfn10, Slfn2, Slfn1, Slfn4, Slfn3, LOC100043636, LOC435271, Slfn14, Pex12, Ap2b1, Rasl10b, OTTMUSG00000000934, 1700020L24Rik, Mmp28, Taf15, OTTMUSG00000000990, Ccl5, Ccl9, Ccl6, LOC194905, Ccl3, Ccl4, OTTMUSG00000000971, Expi, 1100001G20Rik, 2700008B19Rik, LOC676191, Tcf2, Ddx52, Ap1gbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052M21.bB6Ng01-052M21.g
ACCDH876047DH876048
length1,109527
definitionDH876047|Mus musculus domesticus DNA, BAC clone: B6Ng01-052M21, 5' end.DH876048|Mus musculus domesticus DNA, BAC clone: B6Ng01-052M21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,679,471 - 82,680,571)(82,804,119 - 82,804,651)
sequence
gaattctcagggaatggctgccttctgggaccttcctccaataaacaagc
tacaggctgaaagctcggctgctgaacgtaacatgatgttccttcaagga
cacaggagacttcaggatctcccagtgagtgccactgggtctacacgcac
ctctacgaaccagtcacgggcattggcaaaaaaaaaaaaaaaaaaagggg
gggggcatttaaatgagctgcctcaacgtacaaagaacatattttctcct
ttaatctcatatgcatatctcccattttttaatccacaaaaccaaatgtt
ttcattttgtagatgatgatgatgaagaagaagaagaagaagaagaagaa
gaagaagaagaagaagaagaagaagaagacgacgacgacgactcagctga
gtggtagtggcgcacacctttaatcccagagctggggaggcagaggcaag
tagatttctgaattcaaggctggtctggtctacaaagtgagttccaggac
agtcagggctacagagaaaccctgtctcaaaaccaatgaatgaacaaaag
aaaacaggaaaggaaagggaaggaaaggaagctccgagaggttcagtaat
ttgcctaaactcatgcagccaggaagtgaaaagctgggtttcaaaactag
gttcgtctatttcttaaatccaagtttatctccctaacataccgaggacc
taattctgtttttaacttcgatcctcccagacttgagcaactttctcttt
tcacgaactcagcaaagaacccatgactaaagctttttgacgattgatta
agcacctattaatttcaagaagggctttcgttttgtgagaaacttaaaca
gttagcactttggctttattttaaaatcgtacacagaaaatcccaggcat
ctctcctatcccacactgatcataacttacatccactacctattcaaact
tccagtcgtttcttcatttatcattcatttgtccacttcaggggataaag
aaagctactttcaccaaaaaccctccctcatgactcccagtagataataa
cagcagggggggtctttgctggaagcaacgaacatcaaaactttaaaagc
cttttgttt
cacgccacctccgcgcgctctgcgctctgggatccggagcgaccaggacc
tggtgagaccctcagctcccctccaccttccccgaggtccagcacaccag
aactggaacctgagcagcccagaagccagggtggcaccactgtgtctctc
ctgtctgaagacccggatattttctcagacttggcgacacgttcctttaa
aagtaggtgctgaggactggaggggcctgggagtgaaaggggatgattcc
agtgggtgagagactgaccagcccagcacaggagaagggggacccagatg
ggtgaagggatgggggagggaggctgtctctgtcactctagcttgctctg
gctggcaatctcaacaggaagtctctgagctggtagagcctgttactctt
attaggtgcaagttagagtacaagctttaggccccaaggtacagcttgaa
atgacaatgttgaaagggattctgtagatgccactgagcgacccctctct
ctctaagatactgtctttaactgagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_82679471_82680571
seq2: B6Ng01-052M21.b_49_1157

seq1  GAATTCTCAGGGAATGGCTGCCTTCTGGGACCTTCCTCCAATAAACAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGGGAATGGCTGCCTTCTGGGACCTTCCTCCAATAAACAAGC  50

seq1  TACAGGCTGAAAGCTCGGCTGCTGAACGTAACATGATGTTCCTTCAAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGCTGAAAGCTCGGCTGCTGAACGTAACATGATGTTCCTTCAAGGA  100

seq1  CACAGGAGACTTCAGGATCTCCCAGTGAGTGCCACTGGGTCTACACGCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGAGACTTCAGGATCTCCCAGTGAGTGCCACTGGGTCTACACGCAC  150

seq1  CTCTACGAACCAGTCACGGGCATTGGCAAAAAAAAAAAAAAAAAAAGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACGAACCAGTCACGGGCATTGGCAAAAAAAAAAAAAAAAAAAGGGG  200

seq1  GGGGGCATTTAAATGAGCTGCCTCAACGTACAAAGAACATATTTTCTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCATTTAAATGAGCTGCCTCAACGTACAAAGAACATATTTTCTCCT  250

seq1  TTAATCTCATATGCATATCTCCCATTTTTTAATCCACAAAACCAAATGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCTCATATGCATATCTCCCATTTTTTAATCCACAAAACCAAATGTT  300

seq1  TTCATTTTGTAGATGATGATGATGAAGAAGAAGAAGAAGAAGAAGAAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTGTAGATGATGATGATGAAGAAGAAGAAGAAGAAGAAGAAGAA  350

seq1  GAAGAAGAAGAAGAAGAAGAAGAAGAAGACGACGACGACGACTCAGCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGAAGAAGAAGAAGAAGAAGAAGACGACGACGACGACTCAGCTGA  400

seq1  GTGGTAGTGGCGCACACCTTTAATCCCAGAGCTGGGGAGGCAGAGGCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAGTGGCGCACACCTTTAATCCCAGAGCTGGGGAGGCAGAGGCAAG  450

seq1  TAGATTTCTGAATTCAAGGCTGGTCTGGTCTACAAAGTGAGTTCCAGGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTTCTGAATTCAAGGCTGGTCTGGTCTACAAAGTGAGTTCCAGGAC  500

seq1  AGTCAGGGCTACAGAGAAACCCTGTCTCAAAACCAATGAATGAACAAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGGGCTACAGAGAAACCCTGTCTCAAAACCAATGAATGAACAAAAG  550

seq1  AAAACAGGAAAGGAAAGGGAAGGAAAGGAAGCTCCGAGAGGTTCAGTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGGAAAGGAAAGGGAAGGAAAGGAAGCTCCGAGAGGTTCAGTAAT  600

seq1  TTGCCTAAACTCATGCAGCCAGGAAGTGAAAAGCTGGGTTTCAAAACTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTAAACTCATGCAGCCAGGAAGTGAAAAGCTGGGTTTCAAAACTAG  650

seq1  GTTCGTCTATTTCTTAAATCCAAGTTTATCTCCCTAACATACCGAGGACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCGTCTATTTCTTAAATCCAAGTTTATCTCCCTAACATACCGAGGACC  700

seq1  TAATTCTG-TTTTAACTTCGATCCTCCCAGACTTGAGCAAC-TTCTCTTT  748
      |||||||| |||||||||||||||||||||||||||||||| ||||||||
seq2  TAATTCTGTTTTTAACTTCGATCCTCCCAGACTTGAGCAACTTTCTCTTT  750

seq1  TCACGAACTCAGCAAAGAACCCATGACTAAAGCTTTTTGACGATTGATTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGAACTCAGCAAAGAACCCATGACTAAAGCTTTTTGACGATTGATTA  800

seq1  AGCACCTATTAATTTCAGGAAGGGC-TTCG-TTTGTGAGAAACTTAAACA  846
      ||||||||||||||||| ||||||| |||| |||||||||||||||||||
seq2  AGCACCTATTAATTTCAAGAAGGGCTTTCGTTTTGTGAGAAACTTAAACA  850

seq1  GTTAGCACTTTGGCTTTATTTTAAAATCGTACACAGAAAATCCCAGGCAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCACTTTGGCTTTATTTTAAAATCGTACACAGAAAATCCCAGGCAT  900

seq1  CTCTCCTATCCCACACTGATCATAAC-TACATCCACTACCTATTCAAACC  945
      |||||||||||||||||||||||||| |||||||||||||||||||||| 
seq2  CTCTCCTATCCCACACTGATCATAACTTACATCCACTACCTATTCAAACT  950

seq1  TCCAGTCGTTTCTCCA-TTATCATTCATTTGCCCAC-TCAGGGGATAAAG  993
      ||||||||||||| || |||||||||||||| |||| |||||||||||||
seq2  TCCAGTCGTTTCTTCATTTATCATTCATTTGTCCACTTCAGGGGATAAAG  1000

seq1  AAAGCTACTTTCACCAAAAACCCTCCCTCATGACTCCCAGTAGATAAT-A  1042
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AAAGCTACTTTCACCAAAAACCCTCCCTCATGACTCCCAGTAGATAATAA  1050

seq1  CAGCAGGGGGGG-CCTTGCTGTGAAGCAACGAACATCAAAGCTGTAAAAG  1091
      |||||||||||| | |||||| |||||||||||||||||| || ||||||
seq2  CAGCAGGGGGGGTCTTTGCTG-GAAGCAACGAACATCAAAACTTTAAAAG  1099

seq1  CCTTTTGTTT  1101
      ||||||||||
seq2  CCTTTTGTTT  1109

seq1: chr11_82804119_82804651
seq2: B6Ng01-052M21.g_68_600 (reverse)

seq1  TGCTCAGTTAAAGACAGTATCTTAGAGAGAGAGGGGTCGCTCAGTGGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAGTTAAAGACAGTATCTTAGAGAGAGAGGGGTCGCTCAGTGGCAT  50

seq1  CTACAGAATCCCTTTCAACATTGTCATTTCAAGCTGTACCTTGGGGCCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGAATCCCTTTCAACATTGTCATTTCAAGCTGTACCTTGGGGCCTA  100

seq1  AAGCTTGTACTCTAACTTGCACCTACTAAGAGTAACAGGCTCTACCAGCT  150
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AAGCTTGTACTCTAACTTGCACCTAATAAGAGTAACAGGCTCTACCAGCT  150

seq1  CAGAGACTTCCTGTTGAGATTGCCAGCCAGAGCAAGCTAGAGTGACAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACTTCCTGTTGAGATTGCCAGCCAGAGCAAGCTAGAGTGACAGAG  200

seq1  ACAGCCTCCCTCCCCCATCCCTTCACCCATCTGGGTCCCCCTTCTCCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCTCCCTCCCCCATCCCTTCACCCATCTGGGTCCCCCTTCTCCTGT  250

seq1  GCTGGGCTGGTCAGTCTCTCACCCACTGGAATCATCCCCTTTCACTCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGCTGGTCAGTCTCTCACCCACTGGAATCATCCCCTTTCACTCCCA  300

seq1  GGCCCCTCCAGTCCTCAGCACCTACTTTTAAAGGAACGTGTCGCCAAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCTCCAGTCCTCAGCACCTACTTTTAAAGGAACGTGTCGCCAAGTC  350

seq1  TGAGAAAATATCCGGGTCTTCAGACAGGAGAGACACAGTGGTGCCACCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAATATCCGGGTCTTCAGACAGGAGAGACACAGTGGTGCCACCCT  400

seq1  GGCTTCTGGGCTGCTCAGGTTCCAGTTCTGGTGTGCTGGACCTCGGGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCTGGGCTGCTCAGGTTCCAGTTCTGGTGTGCTGGACCTCGGGGAA  450

seq1  GGTGGAGGGGAGCTGAGGGTCTCACCAGGTCCTGGTCGCTCCGGATCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAGGGGAGCTGAGGGTCTCACCAGGTCCTGGTCGCTCCGGATCCCA  500

seq1  GAGCGCAGAGCGCGCGGAGGTGGCGTGGAATTC  533
      |||||||||||||||||||||||||||||||||
seq2  GAGCGCAGAGCGCGCGGAGGTGGCGTGGAATTC  533