BAC Information

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BAC

Clone NameB6Ng01-055A21
Chromosome11 (Build37)
Map Location 57,840,640 - 57,999,262
singlet/doubletdoublet
Overlap geneLarp1, LOC676527, LOC667947, Cnot8, Gemin5, Mrpl22, Irgb10
Upstream geneGria1, LOC667878, 1810073G14Rik, Mfap3, Galnt10, Sap30l, Hand1, LOC624605
Downstream geneIgtp, LOC263305, LOC100041816, EG668249, 4930438A08Rik, Zfp692, Zfp672, 1700047K16Rik, Sh3bp5l, 2210415F13Rik, LOC624814, 1810065E05Rik, OTTMUSG00000005737, 4930504O13Rik, Olfr30, Olfr333-ps1, Olfr332, Olfr331, Olfr330, Olfr329, Olfr328, Olfr327-ps1, Olfr325, Olfr324, 2210407C18Rik, Olfr323, Trim58, Olfr216, OTTMUSG00000005755, Olfr320, LOC668058, Olfr319, Olfr318, Olfr317, Olfr316, Olfr315, Olfr314, 3100002J23Rik, Olfr313, Olfr312, GA_x5J8B7W3UM0-1747565-1747342, Olfr311, 2810021J22Rik, Zfp39, Butr1, Rnf187, LOC676691, Hist3h2ba, Hist3h2bb, Hist3h2a, LOC382523, Trim17, Trim11, Obscn, A230051G13Rik, 4930543L23Rik, Gja12, Guk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055A21.bB6Ng01-055A21.g
ACCDH877624DH877625
length9861,070
definitionDH877624|Mus musculus domesticus DNA, BAC clone: B6Ng01-055A21, 5' end.DH877625|Mus musculus domesticus DNA, BAC clone: B6Ng01-055A21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,840,640 - 57,841,551)(57,998,178 - 57,999,262)
sequence
gaattcttgtgccccaggtgtctttgggctgcttgtactaaggctggcca
tccttgcccagtcctagtctacttactatccattggactgtgtgtcaact
ttttctcttcagtatgttgcttccccacatagatgctgtgatgaagggcc
tttgtggggctactttgaatctgcccacaggctaaaagggaaaagatagc
tggtgactgagggtctgccaacttgttgggcctagggaagacagccttct
ccagacttgactcaagcccattcttgattatcaccatcatgcttgccact
gtgaaccaagtctgcaagctgggaagactctttaggtgtttgcatgcttt
tttgctattttgttgtgttcttatatctctacctcccttccaacacttat
tctaccctcatttcttttatttatttatttgtttgtttatttattatatg
taagaacactgtagctgtcttcagacgcaccagaagagggcatcagacct
cattaccggtggttgtgagccaccgtgtggttgctgggatttgaacttca
gaccttcagaagagcagacgggtgctcttacccactgagccatctcacca
gccccctctaccctcatttctaacaacccctcaccactaggtaagaaaga
aagaaggctaggaggagaacagtggtatagacctctgtaggctacttcct
gttgattagggtcctccaggtttcttggggcaagtccagtcttcattgtc
agaatatccagcaaatcagcaatccagcaacagcaaatgtaacagcaggg
ggtcgtagcagctgccacaggcacacttatagctctcacatttgtacctt
ctccagagcccccagaattaacccatatacagctggcaaaaatcatgccc
tccctagagcacaagacagtatagctaatgcctgtggacaaactgaagca
gctccatgtctcacacctgatgttaaaacaaaaata
gaattcaagtcatcaggctgtgtccagtgccttcctctactaagtcatct
catccttcagtgggattttctaagagttagtctacctgagctgagacccc
agtcctcaccctgttccatcttgtgtgtaaaagagttcaaacatatgcca
ggaagtcacctaggggactgactgccgcagaatgtgttgcaggtagaaga
gacagtgtgaatgatacacataggggttgaagaggacatttgccagtcac
gcaaagaagattcctctgccactttggaactcacatgacttctcaggaca
cagacgattttgacataggacacaagaggaaatcacacactcaggactaa
acataatgaatgagatgcaaatcctctatactgaacctcatagagagagg
ggaaatttgctagatcaggaaaccagaccaccccaagtcagagtggatat
tggggcagaaggtgggcagaaggaagctgtgaggggcaggtactttcact
ggggcctccctggcagccaatgttacagaaagaggagaaaggaatagggt
agtttggggaagaactcatctgagcatgtatacagatccagttgggtgtg
tgtctgatcagagatggcaaaaattgtccttaacaaaactagagacatct
ggcctgtcattggataggtgagggagttgtcagccaccatgagtatgagt
gagtatccagcatgaatacccaaacgcatattcctgtgtggatacacaca
cagagcagacggagaattcttaggcacctgacatgtgccgacagcatccc
accgtgtggcaactctgagtagcagtgctaagtcttagaaggagcatgtc
tgggtacaaaaagggtagactcctagaaccttgtcttctaactgttgaga
gtgcatctatccactgagagagacagggcaaaatgagacagaagctggga
atgtgtcccatgaacttcaagggtgcttcgtacactgcttcacttcatcc
gacaacctgcaagcaatgtatgatgctcgctaaagtaagcacttttgttt
ttgtggtcctaggttgaacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_57840640_57841551
seq2: B6Ng01-055A21.b_30_943

seq1  GAATTC-TGTGCCCCAGGTGTCTTTGGGCTGC-AGTACTAAGGCTGGCCA  48
      |||||| |||||||||||||||||||||||||  ||||||||||||||||
seq2  GAATTCTTGTGCCCCAGGTGTCTTTGGGCTGCTTGTACTAAGGCTGGCCA  50

seq1  TCCTTGCCCAGTCCTAGTCTACTTACTATCCATTGGACTGTGTGTCAACT  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGCCCAGTCCTAGTCTACTTACTATCCATTGGACTGTGTGTCAACT  100

seq1  TTTTCTCTTCAGTATGTTGCTTCCCCACATAGATGCTGTGATGAAGGGCC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCTTCAGTATGTTGCTTCCCCACATAGATGCTGTGATGAAGGGCC  150

seq1  TTTGTGGGGCTACTTTGAATCTGCCCACAGGCTAAAAGGGAAAAGATAGC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGGGGCTACTTTGAATCTGCCCACAGGCTAAAAGGGAAAAGATAGC  200

seq1  TGGTGACTGAGGGTCTGCCAACTTGTTGGGCCTAGGGAAGACAGCCTTCT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGACTGAGGGTCTGCCAACTTGTTGGGCCTAGGGAAGACAGCCTTCT  250

seq1  CCAGACTTGACTCAAGCCCATTCTTGATTATCACCATCATGCTTGCCACT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACTTGACTCAAGCCCATTCTTGATTATCACCATCATGCTTGCCACT  300

seq1  GTGAACCAAGTCTGCAAGCTGGGAAGACTCTTTAGGTGTTTGCATGCTTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACCAAGTCTGCAAGCTGGGAAGACTCTTTAGGTGTTTGCATGCTTT  350

seq1  TTTGCTATTTTGTTGTGTTCTTATATCTCTACCTCCCTTCCAACACTTAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTATTTTGTTGTGTTCTTATATCTCTACCTCCCTTCCAACACTTAT  400

seq1  TCTACCCTCATTTCTTTTATTTATTTATTTGTTTGTTTATTTATTATATG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCCTCATTTCTTTTATTTATTTATTTGTTTGTTTATTTATTATATG  450

seq1  TAAGAACACTGTAGCTGTCTTCAGACGCACCAGAAGAGGGCATCAGACCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAACACTGTAGCTGTCTTCAGACGCACCAGAAGAGGGCATCAGACCT  500

seq1  CATTACCGGTGGTTGTGAGCCACCGTGTGGTTGCTGGGATTTGAACTTCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACCGGTGGTTGTGAGCCACCGTGTGGTTGCTGGGATTTGAACTTCA  550

seq1  GACCTTCAGAAGAGCAGACGGGTGCTCTTACCCACTGAGCCATCTCACCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTCAGAAGAGCAGACGGGTGCTCTTACCCACTGAGCCATCTCACCA  600

seq1  GCCCCCTCTACCCTCATTTCTAACAACCCCTCACCACTAGGTAAGAAAGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCTCTACCCTCATTTCTAACAACCCCTCACCACTAGGTAAGAAAGA  650

seq1  AAGAAGGCTAGGAGGAGAACAGTGGTATAGACCTCTGTAGGCTACTTCCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGCTAGGAGGAGAACAGTGGTATAGACCTCTGTAGGCTACTTCCT  700

seq1  GTTGATTAGGGTCCTCCAGGTTTCTTGGGGCAAGTCCAGTCTTCATTGTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATTAGGGTCCTCCAGGTTTCTTGGGGCAAGTCCAGTCTTCATTGTC  750

seq1  AGAATATCCAGCAAATCAGCAATCCAGCAACAGCAAATGTAACAGCAGGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATCCAGCAAATCAGCAATCCAGCAACAGCAAATGTAACAGCAGGG  800

seq1  GGTCGTAGCAGCTGCCACAGGCACACTTATAGCTCTCACATTTGTACCTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCGTAGCAGCTGCCACAGGCACACTTATAGCTCTCACATTTGTACCTT  850

seq1  CTCCAGAGCCCCCAGAATTAACCCATATACAGCTGGCAAAAATCATGCCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGAGCCCCCAGAATTAACCCATATACAGCTGGCAAAAATCATGCCC  900

seq1  TCCCTAGAGCACAA  912
      ||||||||||||||
seq2  TCCCTAGAGCACAA  914

seq1: chr11_57998178_57999262
seq2: B6Ng01-055A21.g_66_1135 (reverse)

seq1  GGTTCAACCCTTAGGACTCCACCAAAACAAAAGTGCTTACTTTTAAGCGA  50
      |||||||||  |||||  |||| ||||||||||||||||||||  |||||
seq2  GGTTCAACC--TAGGA--CCACAAAAACAAAAGTGCTTACTTT--AGCGA  44

seq1  GCATCACTACCCTTTGCTTGCAGGGTTGTCGGGATGAAGTGAAGCAGTGT  100
      |||||| ||  | ||||||||| ||||||| |||||||||||||||||||
seq2  GCATCA-TA--CATTGCTTGCA-GGTTGTC-GGATGAAGTGAAGCAGTGT  89

seq1  ACGGAAGCACCCTTGAGGTTCATGGGACACATTCCCAGCCTTCTGTCTCC  150
      || ||||||||||||| ||||||||||||||||||||| |||||||||| 
seq2  AC-GAAGCACCCTTGAAGTTCATGGGACACATTCCCAG-CTTCTGTCTCA  137

seq1  TTTTGCCCTGGTCTCTTCTCAGTGGATAGATGCACTCTCAACAGTTAGAA  200
      ||||||||| ||||| ||||||||||||||||||||||||||||||||||
seq2  TTTTGCCCT-GTCTC-TCTCAGTGGATAGATGCACTCTCAACAGTTAGAA  185

seq1  GACAAGGTTCTAGGAGTCTACCCTTTTTGTACCCAGACATGCTCCTTCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGGTTCTAGGAGTCTACCCTTTTTGTACCCAGACATGCTCCTTCTA  235

seq1  AGACTTAGCACTGCTACTCAGAGTTGCCACACGGTGGGATGCTGTCGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTAGCACTGCTACTCAGAGTTGCCACACGGTGGGATGCTGTCGGCA  285

seq1  CATGTCAGGTGCCTAAGAATTCTCCGTCTGCTCTGTGTGTGTATCCACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCAGGTGCCTAAGAATTCTCCGTCTGCTCTGTGTGTGTATCCACAC  335

seq1  AGGAATATGCGTTTGGGTATTCATGCTGGATACTCACTCATACTCATGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATATGCGTTTGGGTATTCATGCTGGATACTCACTCATACTCATGGT  385

seq1  GGCTGACAACTCCCTCACCTATCCAATGACAGGCCAGATGTCTCTAGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGACAACTCCCTCACCTATCCAATGACAGGCCAGATGTCTCTAGTTT  435

seq1  TGTTAAGGACAATTTTTGCCATCTCTGATCAGACACACACCCAACTGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAGGACAATTTTTGCCATCTCTGATCAGACACACACCCAACTGGAT  485

seq1  CTGTATACATGCTCAGATGAGTTCTTCCCCAAACTACCCTATTCCTTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATACATGCTCAGATGAGTTCTTCCCCAAACTACCCTATTCCTTTCT  535

seq1  CCTCTTTCTGTAACATTGGCTGCCAGGGAGGCCCCAGTGAAAGTACCTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTCTGTAACATTGGCTGCCAGGGAGGCCCCAGTGAAAGTACCTGC  585

seq1  CCCTCACAGCTTCCTTCTGCCCACCTTCTGCCCCAATATCCACTCTGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCACAGCTTCCTTCTGCCCACCTTCTGCCCCAATATCCACTCTGACT  635

seq1  TGGGGTGGTCTGGTTTCCTGATCTAGCAAATTTCCCCTCTCTCTATGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTGGTCTGGTTTCCTGATCTAGCAAATTTCCCCTCTCTCTATGAGG  685

seq1  TTCAGTATAGAGGATTTGCATCTCATTCATTATGTTTAGTCCTGAGTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTATAGAGGATTTGCATCTCATTCATTATGTTTAGTCCTGAGTGTG  735

seq1  TGATTTCCTCTTGTGTCCTATGTCAAAATCGTCTGTGTCCTGAGAAGTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTCCTCTTGTGTCCTATGTCAAAATCGTCTGTGTCCTGAGAAGTCA  785

seq1  TGTGAGTTCCAAAGTGGCAGAGGAATCTTCTTTGCGTGACTGGCAAATGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTTCCAAAGTGGCAGAGGAATCTTCTTTGCGTGACTGGCAAATGT  835

seq1  CCTCTTCAACCCCTATGTGTATCATTCACACTGTCTCTTCTACCTGCAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCAACCCCTATGTGTATCATTCACACTGTCTCTTCTACCTGCAAC  885

seq1  ACATTCTGCGGCAGTCAGTCCCCTAGGTGACTTCCTGGCATATGTTTGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTGCGGCAGTCAGTCCCCTAGGTGACTTCCTGGCATATGTTTGAA  935

seq1  CTCTTTTACACACAAGATGGAACAGGGTGAGGACTGGGGTCTCAGCTCAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTACACACAAGATGGAACAGGGTGAGGACTGGGGTCTCAGCTCAG  985

seq1  GTAGACTAACTCTTAGAAAATCCCACTGAAGGATGAGATGACTTAGTAGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACTAACTCTTAGAAAATCCCACTGAAGGATGAGATGACTTAGTAGA  1035

seq1  GGAAGGCACTGGACACAGCCTGATGACTTGAATTC  1085
      |||||||||||||||||||||||||||||||||||
seq2  GGAAGGCACTGGACACAGCCTGATGACTTGAATTC  1070