BAC Information

Click to search

BAC

Clone NameB6Ng01-055N06
Chromosome11 (Build37)
Map Location 47,650,352 - 47,784,391
singlet/doubletdoublet
Overlap genenone
Upstream geneTimd4, Sgcd, LOC628753, LOC100039647
Downstream geneLOC192895, Hn1l-ps2, LOC667163, LOC432554, Gnb2l1, Trim41, LOC100039945, Trim7, Irgm, EG432555, OTTMUSG00000005523, Psme2b-ps, LOC667214
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055N06.bB6Ng01-055N06.g
ACCDH878169DH878170
length813947
definitionDH878169|Mus musculus domesticus DNA, BAC clone: B6Ng01-055N06, 5' end.DH878170|Mus musculus domesticus DNA, BAC clone: B6Ng01-055N06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,650,352 - 47,651,166)(47,783,438 - 47,784,391)
sequence
gaattctgaggttcttcctttgactttgactttggaggaatgtgtagagg
taactcggccatttccatctgggtcatgagtagggataacaagcatccct
ttacacattctttttccatttgtgtgtgctttagcatgagacacatgtcc
acatctttgtcattaaattataaatgcctgaataatataaacacaagtct
tttgtttatatttgctttgcttttccagtctatgccctatcactgtattt
gtttttgcttttgtttttgttttgagctactgtgttagaaaggcattttt
ctttgtatgctttgattttttgttatattaagaaatcttccatgaaacca
aagtcagtgaaatttgccttccccctttttcttccagaatttttcacttt
attgttgtgaatttcaacatatgtttatactcaaaccatgacaatttcaa
aaacatgcccttttcccaaatttcaagcaccatgaaagtttgttctctac
aagcatgcagagaaggaagttcacatttcctaactctcatgtcttccttt
tgatacatgtatctcaggataaaaataaaaattttgcaacaatggctgaa
acactggtgatcataaaaactgaggttgaattccaagaagcctccctcag
ctgagataaatggaacctacatataagaaactttatgctatagtgaactg
ttggcttatagcatgttgcaagataatatgccccagtacaggggaatgcc
agggccaggaattgggagtgggtgggttggggagcagacagaggaagggg
atagggggcttca
gaattccagaatagttaggtctgctattataaaactgcttaaataaaaaa
gatggttaaaacacataagacgtcagctctccctccccccttctttccct
ttgagaagaatggcaccagttggggaagcaatcacctcatgtgtgacttg
tctcagtatttctctagtaccctggccagttcctccaggcctcttcagca
acactgcttttattttgcttacctaatctgactaccttgacagatgcacc
tggatctcatctcatagtacctaaaattagtttccaggggggggggcttt
ttagaacactaggtgctgaaggttgacccccagatttctgatttggtgca
tctagggctgaccagaggatttgcatccctagctggttcacagtaaggct
ggaactgttcatttgaggaccttactttggagtctctgtgctagttttcc
ctaggtggctttattgtcctgggcaacaattgcatcaccaccatgatctt
ttctcagtacccacactttgtagctcggtcctgcatgtacttctgtcact
tctatgctgttgatgtcctttatctctaatcaaatgtaagaaacagaaag
ttttgtagtctagtgtgtctgatgtacatatcaacgaaagtgaatgattt
aggagcagtacggctttctctgggtcaagtttcaggtttgaaattctggg
aattgcagggttctatcttcttttctctcccttattccctagcctgacaa
taaagaaatgaacgaatttatttatatataaataaataaataaataaata
ataaataaataaaataaataaatgggaagagaatttactgaggtctgtag
gtaaatattacaaataacataaaaatacattgttaacaaaggtgatcaat
ctcagggataaatatgttaatacataatacagtcactcattttctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_47650352_47651166
seq2: B6Ng01-055N06.b_45_857

seq1  GAATTCTGAGGTTCTTCCTTTGACTTTGACTTTGGAGGAATGTGTAGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGGTTCTTCCTTTGACTTTGACTTTGGAGGAATGTGTAGAGG  50

seq1  TAACTCGGCCATTTCCATCTGGGTCATGAGTAGGGATAACAAGCATCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCGGCCATTTCCATCTGGGTCATGAGTAGGGATAACAAGCATCCCT  100

seq1  TTACACATTCTTTTTCCATTTGTGTGTGCTTTAGCATGAGACACATGTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACATTCTTTTTCCATTTGTGTGTGCTTTAGCATGAGACACATGTCC  150

seq1  ACATCTTTGTCATTAAATTATAAATGCCTGAATAATATAAACACAAGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTTTGTCATTAAATTATAAATGCCTGAATAATATAAACACAAGTCT  200

seq1  TTTGTTTATATTTGCTTTGCTTTTCCAGTCTATGCCCTATCACTGTATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTATATTTGCTTTGCTTTTCCAGTCTATGCCCTATCACTGTATTT  250

seq1  GTTTTTGCTTTTGTTTTTGTTTTGAGCTACTGTGTTAGAAAGGCATTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGCTTTTGTTTTTGTTTTGAGCTACTGTGTTAGAAAGGCATTTTT  300

seq1  CTTTGTATGCTTTGATTTTTTGTTATATTAAGAAATCTTCCATGAAACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTATGCTTTGATTTTTTGTTATATTAAGAAATCTTCCATGAAACCA  350

seq1  AAGTCAGTGAAATTTGCCTTCCCCCTTTTTCTTCCAGAATTTTTCACTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAGTGAAATTTGCCTTCCCCCTTTTTCTTCCAGAATTTTTCACTTT  400

seq1  ATTGTTGTGAATTTCAACATATGTTTATACTCAAACCATGACAATTTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTGTGAATTTCAACATATGTTTATACTCAAACCATGACAATTTCAA  450

seq1  AAACATGCCCTTTTCCCAAATTTCAAGCACCATGAAAGTTTGTTCTCTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGCCCTTTTCCCAAATTTCAAGCACCATGAAAGTTTGTTCTCTAC  500

seq1  AAGCATGCAGAGAAGGAAGTTCACATTTCCTAACTCTCATGTCTTCCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATGCAGAGAAGGAAGTTCACATTTCCTAACTCTCATGTCTTCCTTT  550

seq1  TGATACATGTATCTCAGGATAAAAATAAAAATTTTGCAACAATGGCTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACATGTATCTCAGGATAAAAATAAAAATTTTGCAACAATGGCTGAA  600

seq1  ACACTGGTGATCATAAAAACTGAGGTTGAATTCCAAGAAGCCTCCCTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGGTGATCATAAAAACTGAGGTTGAATTCCAAGAAGCCTCCCTCAG  650

seq1  CTGAGATAAATGGAACCTACATATAAGAAACTTTATGCTATAGTGAACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATAAATGGAACCTACATATAAGAAACTTTATGCTATAGTGAACTG  700

seq1  TTGGCTTATAGCATGTTGCAAGATAATATGCCCCAGTACAGGGGAATGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTTATAGCATGTTGCAAGATAATATGCCCCAGTACAGGGGAATGCC  750

seq1  AGGGCCAGGAATTGGGAGTGGGTGGGTTGGGGAGCAGGACAGAGGAAGGG  800
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AGGGCCAGGAATTGGGAGTGGGTGGGTTGGGGAGCA-GACAGAGGAAGGG  799

seq1  GATAGGGGGCATTCA  815
      |||||||||| ||||
seq2  GATAGGGGGC-TTCA  813

seq1: chr11_47783438_47784391
seq2: B6Ng01-055N06.g_67_1011 (reverse)

seq1  AGAAAAATAGAAGTGAACTGTATTATGTATTAACATATTTATCCCTGAGA  50
      |||||   |  |||| ||||||||||||||||||||||||||||||||||
seq2  AGAAA---ATGAGTG-ACTGTATTATGTATTAACATATTTATCCCTGAGA  46

seq1  TTGATCAACTTTGTTAATCAATGTA-TTTTATGTTATTTGTAATATTTTA  99
      ||||||| ||||||||| ||||||| ||||||||||||||||||| ||||
seq2  TTGATCACCTTTGTTAA-CAATGTATTTTTATGTTATTTGTAATA-TTTA  94

seq1  CCTACAGACCTCAGTAAATTCTCCTTCCCATTTTATTTATTTTATTTATT  149
      |||||||||||||||||||||| ||||||| |||||||||||||||||||
seq2  CCTACAGACCTCAGTAAATTCT-CTTCCCA-TTTATTTATTTTATTTATT  142

seq1  TATTTATTTATTTATTTATTTTATTTATATATAAATAAATTCGTTCATTT  199
      || ||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TA-TTATTTATTTATTTA-TTTATTTATATATAAATAAATTCGTTCATTT  190

seq1  CTTTATTGTCAGGCTAGGGAATAAGGGAGAGAAAAGAAGATAGAACCCTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTGTCAGGCTAGGGAATAAGGGAGAGAAAAGAAGATAGAACCCTG  240

seq1  CAATTCCCAGAATTTCAAACCTGAAACTTGACCCAGAGAAAGCCGTACTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCCCAGAATTTCAAACCTGAAACTTGACCCAGAGAAAGCCGTACTG  290

seq1  CTCCTAAATCATTCACTTTCGTTGATATGTACATCAGACACACTAGACTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAAATCATTCACTTTCGTTGATATGTACATCAGACACACTAGACTA  340

seq1  CAAAACTTTCTGTTTCTTACATTTGATTAGAGATAAAGGACATCAACAGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTTTCTGTTTCTTACATTTGATTAGAGATAAAGGACATCAACAGC  390

seq1  ATAGAAGTGACAGAAGTACATGCAGGACCGAGCTACAAAGTGTGGGTACT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAGTGACAGAAGTACATGCAGGACCGAGCTACAAAGTGTGGGTACT  440

seq1  GAGAAAAGATCATGGTGGTGATGCAATTGTTGCCCAGGACAATAAAGCCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAGATCATGGTGGTGATGCAATTGTTGCCCAGGACAATAAAGCCA  490

seq1  CCTAGGGAAAACTAGCACAGAGACTCCAAAGTAAGGTCCTCAAATGAACA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGGAAAACTAGCACAGAGACTCCAAAGTAAGGTCCTCAAATGAACA  540

seq1  GTTCCAGCCTTACTGTGAACCAGCTAGGGATGCAAATCCTCTGGTCAGCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAGCCTTACTGTGAACCAGCTAGGGATGCAAATCCTCTGGTCAGCC  590

seq1  CTAGATGCACCAAATCAGAAATCTGGGGGTCAACCTTCAGCACCTAGTGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATGCACCAAATCAGAAATCTGGGGGTCAACCTTCAGCACCTAGTGT  640

seq1  TCTAAAAAGCCCCCCCCCCTGGAAACTAATTTTAGGTACTATGAGATGAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAAAGCCCCCCCCCCTGGAAACTAATTTTAGGTACTATGAGATGAG  690

seq1  ATCCAGGTGCATCTGTCAAGGTAGTCAGATTAGGTAAGCAAAATAAAAGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGGTGCATCTGTCAAGGTAGTCAGATTAGGTAAGCAAAATAAAAGC  740

seq1  AGTGTTGCTGAAGAGGCCTGGAGGAACTGGCCAGGGTACTAGAGAAATAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTGCTGAAGAGGCCTGGAGGAACTGGCCAGGGTACTAGAGAAATAC  790

seq1  TGAGACAAGTCACACATGAGGTGATTGCTTCCCCAACTGGTGCCATTCTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACAAGTCACACATGAGGTGATTGCTTCCCCAACTGGTGCCATTCTT  840

seq1  CTCAAAGGGAAAGAAGGGGGGAGGGAGAGCTGACGTCTTATGTGTTTTAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGGGAAAGAAGGGGGGAGGGAGAGCTGACGTCTTATGTGTTTTAA  890

seq1  CCATCTTTTTTATTTAAGCAGTTTTATAATAGCAGACCTAACTATTCTGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTTTTTATTTAAGCAGTTTTATAATAGCAGACCTAACTATTCTGG  940

seq1  AATTC  954
      |||||
seq2  AATTC  945