BAC Information

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BAC

Clone NameB6Ng01-058E05
Chromosome11 (Build37)
Map Location 38,642,008 - 38,823,368
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC276941
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058E05.bB6Ng01-058E05.g
ACCDH879890DH879891
length103997
definitionDH879890|Mus musculus domesticus DNA, BAC clone: B6Ng01-058E05, 5' end.DH879891|Mus musculus domesticus DNA, BAC clone: B6Ng01-058E05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,823,266 - 38,823,368)(38,642,008 - 38,643,028)
sequence
gaattcagtgagaatagcacttcaaagaggacattcacaacgtcagtgtg
tgcatgcatggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gtg
gaattccataggggattgcttaaaacgctgcctgctctaaatggtactca
gtcttgccacagattacagtgctgcagaggtgtgataagaaaacttcaac
tgaaggcaggattggaggaccagtggtaaacatgctacatcctgcaaatg
aggcttcacagagggagggagacatcctcaactgtctgtggtgtgttctt
ggtctacaattgaagtttccttgtgttgctaaaccacaaactgatatacc
tacagtggctgatgatttatttgcacttctaccttttatatatctaaaca
tttacgcattcaataaaaaaagagacttacatttatcctcctaaacactg
ccttatttccattgcctatagtatatgagaaacatcattttatttttatt
tatttaacttatcattatataatatcacctattggaaaggatcaaaataa
aattaaacaacgaaacgaggcaggaagagatttttgaactaataaaagtt
ttttcagggtatttactaaaggtgactttagcagactcatgaagttcagc
catggcgtttatacatagggatgttacttttaaaatcagatcgatttgga
aatgaattattaaacaataagttattagattccaaactctagcattatgt
actataattatagaaagaggaaaaaagcggtgagttgcttcacagcttaa
atacattggcaacattggcagaaagtgagggattagaaagaaacaaaaca
aaacaaacaattaacgtaaacaatagtgtaaagtgcagcatcatgtaaat
gggaaagggatgtttttcctttgtgcttccacgtgactctcataggcaga
ggcacgggctgattcgccatgctggacattacttcattacaagttcaacc
attaaattaatgagagtgcctgttactctagcagatcaaggcccaaatgt
tcaaatcacagactgctacttacgaataacaaacaaacagaaaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_38823266_38823368
seq2: B6Ng01-058E05.b_43_145 (reverse)

seq1  CACACACACACACACACACACACACACACACACACACACACACCATGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACACACACCATGCAT  50

seq1  GCACACACTGACGTTGTGAATGTCCTCTTTGAAGTGCTATTCTCACTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACACTGACGTTGTGAATGTCCTCTTTGAAGTGCTATTCTCACTGAA  100

seq1  TTC  103
      |||
seq2  TTC  103

seq1: chr11_38642008_38643028
seq2: B6Ng01-058E05.g_71_1067

seq1  GAATTCCATAGGGGATTGCTTAAAACGCTGCCTGCTCTAAATGGTACTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAGGGGATTGCTTAAAACGCTGCCTGCTCTAAATGGTACTCA  50

seq1  GTCTTGCCACAGATTACAGTGCTGCAGAGGTGTGATAAGAAAACTTCAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGCCACAGATTACAGTGCTGCAGAGGTGTGATAAGAAAACTTCAAC  100

seq1  TGAAGGCAGGATTGGAGGACCAGTGGTAAACATGCTACATCCTGCAAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGCAGGATTGGAGGACCAGTGGTAAACATGCTACATCCTGCAAATG  150

seq1  AGGCTTCACAGAGGGAGGGAGACATCCTCAACTGTCTGTGGTGTGTTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTCACAGAGGGAGGGAGACATCCTCAACTGTCTGTGGTGTGTTCTT  200

seq1  GGTCTACAATTGAAGTTTCCTTGTGTTGCTAAACCACAAACTGATATACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTACAATTGAAGTTTCCTTGTGTTGCTAAACCACAAACTGATATACC  250

seq1  TACAGTGGCTGATGATTTATTTGCACTTCTACCTTTTATATATCTAAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTGGCTGATGATTTATTTGCACTTCTACCTTTTATATATCTAAACA  300

seq1  TTTACGCATTCAATAAAAAAAGAGACTTACATTTATCCTCCTAAACACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACGCATTCAATAAAAAAAGAGACTTACATTTATCCTCCTAAACACTG  350

seq1  CCTTATTTCCATTGCCTATAGTATATGAGAAACATCATTTTATTTTTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATTTCCATTGCCTATAGTATATGAGAAACATCATTTTATTTTTATT  400

seq1  TATTTAACTTATCATTATATAATATCACCTATTGGAAAGGATCAAAATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAACTTATCATTATATAATATCACCTATTGGAAAGGATCAAAATAA  450

seq1  AATTAAACAACGAAACGAGGCAGGAAGAGATTTTTGAACTAATAAAAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAACAACGAAACGAGGCAGGAAGAGATTTTTGAACTAATAAAAGTT  500

seq1  TTTTCAGGGTATTTACTAAAGGTGACTTTAGCAGACTCATGAAGTTCAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGGGTATTTACTAAAGGTGACTTTAGCAGACTCATGAAGTTCAGC  550

seq1  CATGGCGTTTATACATAGGGATGTTACTTTTAAAATCAGATCGATTTGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCGTTTATACATAGGGATGTTACTTTTAAAATCAGATCGATTTGGA  600

seq1  AATGAATTATTAAACAATAAGTTATTAGATTCCAAACTCTAGCATTATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATTATTAAACAATAAGTTATTAGATTCCAAACTCTAGCATTATGT  650

seq1  ACTATAATTATAGAAAGAGGAAAAAAGCGGTGAGTTGCTTCACAGCTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAATTATAGAAAGAGGAAAAAAGCGGTGAGTTGCTTCACAGCTTAA  700

seq1  ATACATTGGCAACATTGGCAGAAAGTGAGGGATTAGAAAGAAACAAAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTGGCAACATTGGCAGAAAGTGAGGGATTAGAAAGAAACAAAACA  750

seq1  AAACAAACAATTAACGTAAACAATAGTGTAAAGTGCAGCATCATGTAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAATTAACGTAAACAATAGTGTAAAGTGCAGCATCATGTAAAT  800

seq1  GGGAAAGGGATGTTTTTCCTTTGTGCTTCCACGTGACTCTCATAGGCAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAGGGATGTTTTTCCTTTGTGCTTCCACGTGACTCTCATAGGCAGA  850

seq1  GGCACGGGCTGATTCGCCATGCTGGAACATTACTTCATTTACAAGTTCAA  900
      ||||||||||||||||||||||||| ||||||||||| |||||||||| |
seq2  GGCACGGGCTGATTCGCCATGCTGG-ACATTACTTCA-TTACAAGTTC-A  897

seq1  ACCATTAAAATTAATGAGGAGTGCCTGTTTACTTCTAGCCAAGATCCAAA  950
      |||||| |||||||||| ||||||||| |||| ||||||  |||||  ||
seq2  ACCATT-AAATTAATGA-GAGTGCCTG-TTAC-TCTAGC--AGATC--AA  939

seq1  GGGCCCCAAATGTTCAGAATTCACAAGGAACTGCTACTTTTACAGAATAA  1000
      ||  |||||||||||  || |||||    ||||||||  |||| |||| |
seq2  GG--CCCAAATGTTC--AAATCACA---GACTGCTAC--TTAC-GAAT-A  978

seq1  ACAAAACAAAACAGAAAAAAA  1021
      |||||   |||||||||||||
seq2  ACAAA--CAAACAGAAAAAAA  997