BAC Information

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BAC

Clone NameB6Ng01-060A03
Chromosome11 (Build37)
Map Location 108,224,976 - 108,365,506
singlet/doubletdoublet
Overlap geneApoh, LOC100041381, Ccdc46
Upstream genePitpnc1, Psmd12, A830035A12Rik, Helz, Cacng1, Cacng4, Cacng5, Prkca
Downstream geneOlfr1397-ps1, LOC629945, Axin2, E030025P04Rik, LOC194985, Rgs9, 1700096J18Rik, Gna13, 9930022D16Rik, X83328, Slc16a6, Arsg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060A03.bB6Ng01-060A03.g
ACCDH881117DH881118
length1,0871,114
definitionDH881117|Mus musculus domesticus DNA, BAC clone: B6Ng01-060A03, 5' end.DH881118|Mus musculus domesticus DNA, BAC clone: B6Ng01-060A03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,364,409 - 108,365,506)(108,224,976 - 108,226,101)
sequence
gaattcaagcatatatgtcctctatatcttttttacagcacgaatataag
tgaggttctttcaatctatgatgtccattctgcatttagaattcacttct
tgctttaaaaaaaaaaagcctgaatatttttcaagtttaaagatgtttga
gatacctaacataaaatagagtgagaaagaaaatctagaaatatcaaata
ctttagctatcactgataacaattacaaaaaaattccaatttatgggtta
attctcacatgtaactgccccactaaactgttaggaacattactgtccat
tctactacagtaggtttgctctgggagaatctcaataaacttggcagcac
cctagatcaaagtcctcctttgcccctcattcttactcattgcctacatc
tcttctgttaaccagatcttaatccctcagttccacacttactaatccca
aggccagaactcaaacattctaaccctttatcaaagcatgtgcaaaatta
cacaagtggacagacagacagagccacaagtctgcggactagagatgtgc
tcagtggtcaaacatttgccctgtgtgtaaacacacacacaactcaccaa
ttttattctgcctacaccaatacaagaaacttctcttttcaactaatcaa
ataatgtccaaactcaaacaaatgttattttcccaaaacatgctatctcc
cttgtgaacacttgagaactttaattctggttcatggttacttaaatgct
tgggttttccttctcaatgaatgcaggaaattaaactaaaaatatccaat
ttactgtataagtgggaaatatagtaaagattttttatcaattccaactg
ccactgcgcaacacacacacacacacttactttgcctagttacatgaaag
cccatacaaatttcatgtattgttggaagctcacagtctcagaatgaaat
tttacttttacattttaattttaaattgtaaaataaatgtaaactgtttt
ggagattacatcagaacaccacctttctttcagctttcgtatggtctcct
cagttcagttgtttcttttgataaagatttcaactct
gaattccatgtgcccatggtgcatatataatgtatgtggagcaaacatct
tgttttagaggtcagaggtcaatgcaaagttccttgctctgttgcttccc
attttattttttaatttcacaggtatgggtttttgcctatctgtatatct
gtgcaccacattcacgcctggtaccatctaaggacagaagaggatgtcag
atcccctagaactgtagctacagatgcttgtgagctaacatgtgggactg
ggaatctaattggggtcctctagaagagaagccagtgcttttaaccactg
aactgtctcctgcccactttccaccttattttgagatagggcctccctct
aagtccaaaagctcatcagttagctggactggccagctgggggctccagg
gatctccctgtgtgtactgcatcacactgtgggtttggaaaacagggagc
tggggtctggagagatggctcagaaagattacagatgtgcactaccacag
ctggtttgtgttctgctggacccagcgctgagagaaagcactctgtcaac
tgagctgcctgcccagatgtctttcttcggaaacactctagagaagcctg
gttcttgcatcttctcttccttaacccttgtcagctgtcctctgctccag
acctgcactctagtgaccgcatcctcccaaagatcactgctcactgtaat
ccacagatcacttgagcttctaatcgtctgtgtgatgtccccatctctca
cctcacaactcactattccagtagctttctaaaataccagtgctagtaac
tgctacccagtgtcatctgtcccttcttcctgttttctttggagaggtat
ctcatccaggctgaaacacggtacttccaactgctttgtcagcttagaag
tgagctcgaagcagagaaagagagtagcctagacacctaccagtcaggct
ctttggtggcttgaacagagctccgatttctaaagttcctttccctcacc
cagcaggctttggagacttgcgatcagtgaggacaattctccgatgacgg
gagctctctcacttccacaacatgggtatagtggagttcgatagatgtgt
cactgtaggtttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_108364409_108365506
seq2: B6Ng01-060A03.b_46_1132 (reverse)

seq1  AGAGTTGAAAATCTTATACAAAAAGAAACAAACTGAAACTGAGGAGACCA  50
      ||||||| ||||||| ||  ||||||||| ||||| ||||||||||||||
seq2  AGAGTTG-AAATCTT-TATCAAAAGAAAC-AACTG-AACTGAGGAGACCA  46

seq1  TACGAAAGCTTGAAAAGAAAGGTGGTG-TCTGATGTAAATCTTCCAATAA  99
      ||||||||||   |||||||||||||| |||||||| |||| ||||| ||
seq2  TACGAAAGCT--GAAAGAAAGGTGGTGTTCTGATGT-AATC-TCCAA-AA  91

seq1  CAGTTTACATTTATTTTAACAATTTAAAATTTAAAATGTAAAAGTAAAAT  149
      ||||||||||||||||| ||||||||||| ||||||||||||||||||||
seq2  CAGTTTACATTTATTTT-ACAATTTAAAA-TTAAAATGTAAAAGTAAAAT  139

seq1  TTCATTTCTGAGACTGTGAGCTTCCAACAATACATGAAATTTGTATGGGC  199
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCA-TTCTGAGACTGTGAGCTTCCAACAATACATGAAATTTGTATGGGC  188

seq1  TTTCATGTAACTAGGCAAAGTAAGTGTGTGTGTGTGTGTTGCGCAGTGGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGTAACTAGGCAAAGTAAGTGTGTGTGTGTGTGTTGCGCAGTGGC  238

seq1  AGTTGGAATTGATAAAAAATCTTTACTATATTTCCCACTTATACAGTAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGAATTGATAAAAAATCTTTACTATATTTCCCACTTATACAGTAAA  288

seq1  TTGGATATTTTTAGTTTAATTTCCTGCATTCATTGAGAAGGAAAACCCAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATATTTTTAGTTTAATTTCCTGCATTCATTGAGAAGGAAAACCCAA  338

seq1  GCATTTAAGTAACCATGAACCAGAATTAAAGTTCTCAAGTGTTCACAAGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTAAGTAACCATGAACCAGAATTAAAGTTCTCAAGTGTTCACAAGG  388

seq1  GAGATAGCATGTTTTGGGAAAATAACATTTGTTTGAGTTTGGACATTATT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAGCATGTTTTGGGAAAATAACATTTGTTTGAGTTTGGACATTATT  438

seq1  TGATTAGTTGAAAAGAGAAGTTTCTTGTATTGGTGTAGGCAGAATAAAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAGTTGAAAAGAGAAGTTTCTTGTATTGGTGTAGGCAGAATAAAAT  488

seq1  TGGTGAGTTGTGTGTGTGTTTACACACAGGGCAAATGTTTGACCACTGAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAGTTGTGTGTGTGTTTACACACAGGGCAAATGTTTGACCACTGAG  538

seq1  CACATCTCTAGTCCGCAGACTTGTGGCTCTGTCTGTCTGTCCACTTGTGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTCTAGTCCGCAGACTTGTGGCTCTGTCTGTCTGTCCACTTGTGT  588

seq1  AATTTTGCACATGCTTTGATAAAGGGTTAGAATGTTTGAGTTCTGGCCTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGCACATGCTTTGATAAAGGGTTAGAATGTTTGAGTTCTGGCCTT  638

seq1  GGGATTAGTAAGTGTGGAACTGAGGGATTAAGATCTGGTTAACAGAAGAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTAGTAAGTGTGGAACTGAGGGATTAAGATCTGGTTAACAGAAGAG  688

seq1  ATGTAGGCAATGAGTAAGAATGAGGGGCAAAGGAGGACTTTGATCTAGGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGGCAATGAGTAAGAATGAGGGGCAAAGGAGGACTTTGATCTAGGG  738

seq1  TGCTGCCAAGTTTATTGAGATTCTCCCAGAGCAAACCTACTGTAGTAGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCCAAGTTTATTGAGATTCTCCCAGAGCAAACCTACTGTAGTAGAA  788

seq1  TGGACAGTAATGTTCCTAACAGTTTAGTGGGGCAGTTACATGTGAGAATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAGTAATGTTCCTAACAGTTTAGTGGGGCAGTTACATGTGAGAATT  838

seq1  AACCCATAAATTGGAATTTTTTTGTAATTGTTATCAGTGATAGCTAAAGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCATAAATTGGAATTTTTTTGTAATTGTTATCAGTGATAGCTAAAGT  888

seq1  ATTTGATATTTCTAGATTTTCTTTCTCACTCTATTTTATGTTAGGTATCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATATTTCTAGATTTTCTTTCTCACTCTATTTTATGTTAGGTATCT  938

seq1  CAAACATCTTTAAACTTGAAAAATATTCAGGCTTTTTTTTTTTAAAGCAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATCTTTAAACTTGAAAAATATTCAGGCTTTTTTTTTTTAAAGCAA  988

seq1  GAAGTGAATTCTAAATGCAGAATGGACATCATAGATTGAAAGAACCTCAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGAATTCTAAATGCAGAATGGACATCATAGATTGAAAGAACCTCAC  1038

seq1  TTATATTCGTGCTGTAAAAAAGATATAGAGGACATATATGCTTGAATTC  1098
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTCGTGCTGTAAAAAAGATATAGAGGACATATATGCTTGAATTC  1087

seq1: chr11_108224976_108226101
seq2: B6Ng01-060A03.g_67_1180

seq1  GAATTCCATGTGCCCATGGTGCATATATAATGTATGTGGAGCAAACATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGTGCCCATGGTGCATATATAATGTATGTGGAGCAAACATCT  50

seq1  TGTTTTAGAGGTCAGAGGTCAATGCAAAGTTCCTTGCTCTGTTGCTTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTAGAGGTCAGAGGTCAATGCAAAGTTCCTTGCTCTGTTGCTTCCC  100

seq1  ATTTTATTTTTTAATTTCACAGGTATGGGTTTTTGCCTATCTGTATATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTTTTTAATTTCACAGGTATGGGTTTTTGCCTATCTGTATATCT  150

seq1  GTGCACCACATTCACGCCTGGTACCATCTAAGGACAGAAGAGGATGTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACCACATTCACGCCTGGTACCATCTAAGGACAGAAGAGGATGTCAG  200

seq1  ATCCCCTAGAACTGTAGCTACAGATGCTTGTGAGCTAACATGTGGGACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCTAGAACTGTAGCTACAGATGCTTGTGAGCTAACATGTGGGACTG  250

seq1  GGAATCTAATTGGGGTCCTCTAGAAGAGAAGCCAGTGCTTTTAACCACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCTAATTGGGGTCCTCTAGAAGAGAAGCCAGTGCTTTTAACCACTG  300

seq1  AACTGTCTCCTGCCCACTTTCCACCTTATTTTGAGATAGGGCCTCCCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTCTCCTGCCCACTTTCCACCTTATTTTGAGATAGGGCCTCCCTCT  350

seq1  AAGTCCAAAAGCTCATCAGTTAGCTGGACTGGCCAGCTGGGGGCTCCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCAAAAGCTCATCAGTTAGCTGGACTGGCCAGCTGGGGGCTCCAGG  400

seq1  GATCTCCCTGTGTGTACTGCATCACACTGTGGGTTTGGAAAACAGGGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCCCTGTGTGTACTGCATCACACTGTGGGTTTGGAAAACAGGGAGC  450

seq1  TGGGGTCTGGAGAGATGGCTCAGAAAGATTACAGATGTGCACTACCACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTCTGGAGAGATGGCTCAGAAAGATTACAGATGTGCACTACCACAG  500

seq1  CTGGTTTGTGTTCTGCTGGACCCAGCGCTGAGAGAAAGCACTCTGTCAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTGTGTTCTGCTGGACCCAGCGCTGAGAGAAAGCACTCTGTCAAC  550

seq1  TGAGCTGCCTGCCCAGATGTCTTTCTTCGGAAACACTCTAGAGAAGCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTGCCTGCCCAGATGTCTTTCTTCGGAAACACTCTAGAGAAGCCTG  600

seq1  GTTCTTGCATCTTCTCTTCCTTAACCCTTGTCAGCTGTCCTCTGCTCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTGCATCTTCTCTTCCTTAACCCTTGTCAGCTGTCCTCTGCTCCAG  650

seq1  ACCTGCACTCTAGTGACCGCATCCTCCCAAAGATCACTGCTCACTGTAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCACTCTAGTGACCGCATCCTCCCAAAGATCACTGCTCACTGTAAT  700

seq1  CCACAGATCACTTGAGCTTCTAATCGTCTGTGTGATGTCCCCATCTCTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGATCACTTGAGCTTCTAATCGTCTGTGTGATGTCCCCATCTCTCA  750

seq1  CCTCACAACTCACTATTCCAGTAGCTTTCTAAAATACCAGTGCTAGTAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACAACTCACTATTCCAGTAGCTTTCTAAAATACCAGTGCTAGTAAC  800

seq1  TGCTACCCAGTGTCATCTGTCCCTTCTTCCTGTTTTCTTTGGAGAGGTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACCCAGTGTCATCTGTCCCTTCTTCCTGTTTTCTTTGGAGAGGTAT  850

seq1  CTCATCCAGGCTGAAACACGGTACTTCCAACTGCTTTGTCAGCTTAGAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCCAGGCTGAAACACGGTACTTCCAACTGCTTTGTCAGCTTAGAAG  900

seq1  TGAGCTCGAAGCAGAAGAAAAGAGAGTAGCCTAGACACCTACCAGTCAGG  950
      |||||||||||||||   ||||||||||||||||||||||||||||||||
seq2  TGAGCTCGAAGCAGA--GAAAGAGAGTAGCCTAGACACCTACCAGTCAGG  948

seq1  CTCTTTGGTGGCTTGAACAGAGCCCCGATTTCTAAAAGTTCCTTTCCCTC  1000
      ||||||||||||||||||||||| ||||||||| ||||||||||||||||
seq2  CTCTTTGGTGGCTTGAACAGAGCTCCGATTTCT-AAAGTTCCTTTCCCTC  997

seq1  ACCCAGCCAGGCCTTTGGAGACTTGCGATCAGTGAGGAC-ATTCTCCCGA  1049
      |||||| |||| ||||||||||||||||||||||||||| |||||||   
seq2  ACCCAG-CAGG-CTTTGGAGACTTGCGATCAGTGAGGACAATTCTCC--G  1043

seq1  ATGACGGGGAGCTCTCTCACTTCCACAACATGGGTATAGTGGAAGTGTCG  1099
      ||||| |||||||||||||||||||||||||||||||||||| ||| |||
seq2  ATGAC-GGGAGCTCTCTCACTTCCACAACATGGGTATAGTGG-AGT-TCG  1090

seq1  AATAGATTGTTGTCACTGTAGGTTTGG  1126
       ||||||   |||||||||||||||||
seq2  -ATAGAT--GTGTCACTGTAGGTTTGG  1114