BAC Information

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BAC

Clone NameB6Ng01-060G13
Chromosome11 (Build37)
Map Location 4,812,350 - 4,952,858
singlet/doubletdoublet
Overlap geneThoc5, Nefh, Ap1b1
Upstream geneSlc35e4, Tcn2, LOC100041720, Pes1, Gal3st1, Sec14l4, Sec14l3, 1700020C11Rik, Sec14l2, LOC625729, Rnf215, 4930562D19Rik, Sf3a1, Tbc1d10a, 2410008K03Rik, LOC625760, Osm, Lif, Hormad2, Mtmr3, LOC100041006, OTTMUSG00000005065, Ascc2, 1110020P15Rik, Zmat5, Cabp7, Nf2, Nipsnap1
Downstream geneRasl10a, Gas2l1, Ewsr1, Rhbdd3, Emid1, Kremen1, Znrf3, LOC100042016, LOC382478, Xbp1, Ccdc117, LOC100041183, Ankrd36, LOC665181, Mrps24, 2010005J08Rik, 2210015D19Rik, Dbnl, Pgam2, Polm, Aebp1, Pold2, Myl7, Gck, Ykt6, Camk2b, LOC100042156
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060G13.bB6Ng01-060G13.g
ACCDH881388DH881389
length1,077729
definitionDH881388|Mus musculus domesticus DNA, BAC clone: B6Ng01-060G13, 5' end.DH881389|Mus musculus domesticus DNA, BAC clone: B6Ng01-060G13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,812,350 - 4,813,438)(4,952,126 - 4,952,858)
sequence
gaattcattcgggtctgccactgggctgcagcacccatgttcctatctgc
tcttctctgcgcccagtaaagatgggacaggcagaccaggtgcttggtga
catgcagaacacagaactttttacagagggtaacccatcatctctgggat
gtggatgggtgctggcttctgggtgcagactttctcaggacggctggtga
aagggtcctgtggggtgacaaaccccgggtctatgttcctggactttgca
ctagtctcagggatgtttagcagggaagcagccatagagaaacgatttta
ggtgctgtctgccctgtgtggagtgtgcgtgccctcccactcagtcagtt
cggagctggggggagtatgctgagttggcttgcactcagcaacctctcca
gaagcttttccaagaggccttttctcacctccagataagacgctgtccgt
ggcaattgaaggcagtgtggacgaagccaaagctcttttcaagccccctg
aggactcccaaggtaacctagtgaatggggtactcactagtcactgctga
ggtcttggtcctttgagaaatagctggactggtgtaatatagctggaggc
ttggccttaggtcagttttagggtaggcccaagagaactcagttcccaga
atcaccacatgcagcctttgggtttcagccctgccacccactagctccca
ggagcattttgactctgaggaaggcaggtaatgtgtttgactccctgtaa
acggtagctggtagctagttataggttaatgcccgtaacccccaaattct
ggaggtagcggtgagaaaatttacacagatttgacccagattggtcataa
agcaacttccagggtgacatattgagatgtttagtgttccccttttgccc
tcaaaaagagagacatatttttatatagaatcattgtgtggattacatga
aagagtggtcttgtcttatgcaccagcaaccgctaactgtacagcactac
tcttaaaaaaaagaattatttttttcattaggttatttatcaagtgatga
gtatactggagctgtctcagacacccc
gaattcactctgtagaccaggctggtctggaactcaaagatctgcctggc
tccgcctcctgaaggctgggattgaggcagaagatacgtggtgaagttcc
ctggtgccggctggaaagacatttgagtgtatgcagaagttcacacagga
tgaaagcgcatgtcagatctgtggggaagggtggatactcagtatgtgga
atccaggctctggggagccatgagggggagggaaaattggattcctactt
cattcctacacatggccagatggagcaggagtgaaatgcaaaggttctca
gcacagaagtactagaaagagatacaagagagttacataaaaaacgcaga
gatggctgagagtgctggctgctctggcagagggtggggacagtccagca
cacacctggcagctcctaagcatctggaattccagttccagcaaatccaa
cgcctttttctggcctccctgagcacgcgcagcacacatgcacacaaata
aggaagaaagagctgggcgtggtggtgcacgcctttaaccccagcacttg
ggagacagaggcaggaggatttctgagttccaggccagcctggtctaaag
agtgagttccgcggctccttctattgtgtcaacaaaatgttgacggatag
gcggccgccaggcctacccactagttgattcaggaagaagttacaaatga
agagaattgaaacaaatgaatagaaagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_4812350_4813438
seq2: B6Ng01-060G13.b_45_1121

seq1  GAATTCATTCGGGTCTGCCACTGGGCTGCAGCACCCATGTTCCTATCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCGGGTCTGCCACTGGGCTGCAGCACCCATGTTCCTATCTGC  50

seq1  TCTTCTCTGCGCCCAGTAAAGATGGGACAGGCAGACCAGGTGCTTGGTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCTGCGCCCAGTAAAGATGGGACAGGCAGACCAGGTGCTTGGTGA  100

seq1  CATGCAGAACACAGAACTTTTTACAGAGGGTAACCCATCATCTCTGGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAGAACACAGAACTTTTTACAGAGGGTAACCCATCATCTCTGGGAT  150

seq1  GTGGATGGGTGCTGGCTTCTGGGTGCAGACTTTCTCAGGACGGCTGGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATGGGTGCTGGCTTCTGGGTGCAGACTTTCTCAGGACGGCTGGTGA  200

seq1  AAGGGTCCTGTGGGGTGACAAACCCCGGGTCTATGTTCCTGGACTTTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTCCTGTGGGGTGACAAACCCCGGGTCTATGTTCCTGGACTTTGCA  250

seq1  CTAGTCTCAGGGATGTTTAGCAGGGAAGCAGCCATAGAGAAACGATTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCTCAGGGATGTTTAGCAGGGAAGCAGCCATAGAGAAACGATTTTA  300

seq1  GGTGCTGTCTGCCCTGTGTGGAGTGTGCGTGCCCTCCCACTCAGTCAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTGTCTGCCCTGTGTGGAGTGTGCGTGCCCTCCCACTCAGTCAGTT  350

seq1  CGGAGCTGGGGGGAGTATGCTGAGTTGGCTTGCACTCAGCAACCTCTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGCTGGGGGGAGTATGCTGAGTTGGCTTGCACTCAGCAACCTCTCCA  400

seq1  GAAGCTTTTCCAAGAGGCCTTTTCTCACCTCCAGATAAGACGCTGTCCGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTTTTCCAAGAGGCCTTTTCTCACCTCCAGATAAGACGCTGTCCGT  450

seq1  GGCAATTGAAGGCAGTGTGGACGAAGCCAAAGCTCTTTTCAAGCCCCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATTGAAGGCAGTGTGGACGAAGCCAAAGCTCTTTTCAAGCCCCCTG  500

seq1  AGGACTCCCAAGGTAACCTAGTGAATGGGGTACTCACTAGTCACTGCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTCCCAAGGTAACCTAGTGAATGGGGTACTCACTAGTCACTGCTGA  550

seq1  GGTCTTGGTCCTTTGAGAAATAGCTGGACTGGTGTAATATAGCTGGAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTGGTCCTTTGAGAAATAGCTGGACTGGTGTAATATAGCTGGAGGC  600

seq1  TTGGCCTTAGGTCAGTTTTAGGGTAGGCCCAAGAGAACTCAGTTCCCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCTTAGGTCAGTTTTAGGGTAGGCCCAAGAGAACTCAGTTCCCAGA  650

seq1  ATCACCACATGCAGCCTTTGGGTTTCAGCCCTGCCACCCACTAGCTCCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCACATGCAGCCTTTGGGTTTCAGCCCTGCCACCCACTAGCTCCCA  700

seq1  GGAGCATTTTGACCCTGAGGAAGGCAGGTAATGTGTTTGACTCCCTGTAA  750
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GGAGCATTTTGACTCTGAGGAAGGCAGGTAATGTGTTTGACTCCCTGTAA  750

seq1  ACGGTAGCTGGTAGCTAGTTATAGGTTAATGCCCGTAACCCCCAAATTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTAGCTGGTAGCTAGTTATAGGTTAATGCCCGTAACCCCCAAATTCT  800

seq1  GGAGGTAGCGGTGAGAAAATTTACACAGATTTGAACCCAGATTGGTCAAT  850
      ||||||||||||||||||||||||||||||||| ||||||||||||| ||
seq2  GGAGGTAGCGGTGAGAAAATTTACACAGATTTG-ACCCAGATTGGTC-AT  848

seq1  AAAGCAACTTCCAGGGTGACATATTGAGATGTTTCAGTGTTCCCCTTTTG  900
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AAAGCAACTTCCAGGGTGACATATTGAGATGTTT-AGTGTTCCCCTTTTG  897

seq1  CCCCCAAAAAGAGAGACAATATTTTTATATAGAATCATTGTGTGGATTAC  950
      ||| ||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CCCTCAAAAAGAGAGAC-ATATTTTTATATAGAATCATTGTGTGGATTAC  946

seq1  ATGAAAGAGTGGTCTTGTCTTATGCACACAGCAACCGTCTAACTGTACCA  1000
      ||||||||||||||||||||||||||| ||||||||| ||||||||| ||
seq2  ATGAAAGAGTGGTCTTGTCTTATGCAC-CAGCAACCG-CTAACTGTA-CA  993

seq1  GCACTACTCTTTAAAAAAAAAGATTTA-TTTATTCATTTAGTTATTTATT  1049
      |||||||||||  |||||||||| ||| ||| ||||||  ||||||||  
seq2  GCACTACTCTT--AAAAAAAAGAATTATTTTTTTCATTAGGTTATTTA--  1039

seq1  TAAAGTATATGAGTATACTGTAGCTGTCTTCAGACACCCC  1089
      | ||||  |||||||||||| ||||||| |||||||||||
seq2  TCAAGT-GATGAGTATACTGGAGCTGTC-TCAGACACCCC  1077

seq1: chr11_4952126_4952858
seq2: B6Ng01-060G13.g_69_797 (reverse)

seq1  TACTTTCTATTCATTTGTCTTCACTTCTCTTCATTTTGTAACTTCTTTCC  50
      |||||||||||||||||| |||| ||||||||| ||||||||||||| | 
seq2  TACTTTCTATTCATTTGT-TTCAATTCTCTTCA-TTTGTAACTTCTTCCT  48

seq1  TCTTC--------------CATGTCTTTTTTTTTTTTTTTTTTTTTTTGA  86
         ||              | || |       | |   |     ||||| 
seq2  GAATCAACTAGTGGGTAGGCCTGGCGGCCGCCTATCCGTCAACATTTTG-  97

seq1  TTTGAAACAGGGTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTT  136
       |||| |||      |    | ||||   ||      |||||||||||||
seq2  -TTGACACA-----ATAGAAGGAGCC---GC------GGAACTCACTCTT  132

seq1  TAGACCAGGCTGGCCTGGAACTCAGAAATCCTCCTGCCTCTGTCTCCCAA  186
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCAGGCTGGCCTGGAACTCAGAAATCCTCCTGCCTCTGTCTCCCAA  182

seq1  GTGCTGGGGTTAAAGGCGTGCACCACCACGCCCAGCTCTTTCTTCCTTAT  236
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGGGTTAAAGGCGTGCACCACCACGCCCAGCTCTTTCTTCCTTAT  232

seq1  TTGTGTGCATGTGTGCTGCGCGTGCTCAGGGAGGCCAGAAAAAGGCGTTG  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGCATGTGTGCTGCGCGTGCTCAGGGAGGCCAGAAAAAGGCGTTG  282

seq1  GATTTGCTGGAACTGGAATTCCAGATGCTTAGGAGCTGCCAGGTGTGTGC  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGCTGGAACTGGAATTCCAGATGCTTAGGAGCTGCCAGGTGTGTGC  332

seq1  TGGACTGTCCCCACCCTCTGCCAGAGCAGCCAGCACTCTCAGCCATCTCT  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTGTCCCCACCCTCTGCCAGAGCAGCCAGCACTCTCAGCCATCTCT  382

seq1  GCGTTTTTTATGTAACTCTCTTGTATCTCTTTCTAGTACTTCTGTGCTGA  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTTTTTTATGTAACTCTCTTGTATCTCTTTCTAGTACTTCTGTGCTGA  432

seq1  GAACCTTTGCATTTCACTCCTGCTCCATCTGGCCATGTGTAGGAATGAAG  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTTTGCATTTCACTCCTGCTCCATCTGGCCATGTGTAGGAATGAAG  482

seq1  TAGGAATCCAATTTTCCCTCCCCCTCATGGCTCCCCAGAGCCTGGATTCC  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAATCCAATTTTCCCTCCCCCTCATGGCTCCCCAGAGCCTGGATTCC  532

seq1  ACATACTGAGTATCCACCCTTCCCCACAGATCTGACATGCGCTTTCATCC  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACTGAGTATCCACCCTTCCCCACAGATCTGACATGCGCTTTCATCC  582

seq1  TGTGTGAACTTCTGCATACACTCAAATGTCTTTCCAGCCGGCACCAGGGA  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGAACTTCTGCATACACTCAAATGTCTTTCCAGCCGGCACCAGGGA  632

seq1  ACTTCACCACGTATCTTCTGCCTCAATCCCAGCCTTCAGGAGGCGGAGCC  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCACCACGTATCTTCTGCCTCAATCCCAGCCTTCAGGAGGCGGAGCC  682

seq1  AGGCAGATCTTTGAGTTCCAGACCAGCCTGGTCTACAGAGTGAATTC  733
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGATCTTTGAGTTCCAGACCAGCCTGGTCTACAGAGTGAATTC  729