BAC Information

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BAC

Clone NameB6Ng01-061P17
Chromosome11 (Build37)
Map Location 109,914,064 - 110,091,620
singlet/doubletdoublet
Overlap geneAbca8a, Abca9, Abca6
Upstream geneE030025P04Rik, LOC194985, Rgs9, 1700096J18Rik, Gna13, 9930022D16Rik, X83328, Slc16a6, Arsg, Wipi1, Prkar1a, BC029169, 1700012B07Rik, 1700023C21Rik, LOC100041492, Abca8b
Downstream geneAbca5, Map2k6, LOC100041523, Kcnj16, Kcnj2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061P17.bB6Ng01-061P17.g
ACCDH882510DH882511
length999984
definitionDH882510|Mus musculus domesticus DNA, BAC clone: B6Ng01-061P17, 5' end.DH882511|Mus musculus domesticus DNA, BAC clone: B6Ng01-061P17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,091,076 - 110,091,620)(109,914,064 - 109,915,048)
sequence
gaattcattgtaaaatccttccagatattccatggatttactgatttata
aaataatatgatcaaactgtgaaaaatatagccttattttgctttttact
gtggtttttttaaaaatattttttattattatgtattttcctcaattaca
attagaatgctatcccaaaagtcccccatatcctccccccatacttccct
acccacccattcccattttttggccctggcattcccctgtactgaggcat
ataaagtttgcatatccaatgggcctctctttccagtgatggccaactag
gccatcttttgatacatatgcagctagagtcatgagctctgggggtactg
gttagttcataatgttgttgcacctacagggttgcagatccctttagctc
cttgggtactttctctagctcctccattgggggccctgtgctccatccaa
tagctgactgtgagcatccacttacgtgtttgctaggccccggtctagtc
tcacaagagatagctatatcagggtcctttcagccaacgcttgctagtat
atgcaatggtgtcatcgtttggaggctaattatgggatggatccctggat
atagcagtctctagatggttcatccttttgtctcagttccaaactttgtc
tctgtaactccttccatgggtgattgtttccaattctaagaaggggcaaa
gtgtccacactttggtcttcgttcttcttcagtttcatgtgtcttgcaaa
ttgtatgttatatcttgggtatactaagtttctgggctaatatccactta
tcagtgagtacatatcatttgagttcttttgtgattgtgttacctcactc
aggatgatgccctccaggtccatccatttgcctaggaatttcataaattc
attcttttatagctgagtagtactccattgtgtaaatgtaccacattttt
tgtatccattcctctgttgaggggcatctggttgctttccagcttctgg
gaattctcttacctttaaagaaagtgagatgaaaatagatacattttaac
atatatgttatacacgtggagattatatatatatatatatatatatatat
atatatatatatatatatatatatatatcatggaactagggaaattttat
cagaaaaatacattttaaatattttaaagtataaaattggtttatcttat
accgagcaaagatatttttaaagtattattacttaagggggggggggggg
ggagagagtaaagatacttacaatatagaagcaaagtgaccaaaggccac
tattttttctccccttgcgataaatgaatgaaatcacataagtcatgaaa
ataactgacatggcatagccaccaacatagagaatctgaaaccaatagga
atatgagaatgaatattgtgacatgtgaaaacatttgaatgtgctaatgt
catggaacaatgtcttcatgttcctacatttataatgatttaaatatcag
agagagtggtaaagtgggtgacttgggattgtcacttctctgcagaaacc
tctaaaacacaaacaactaggagaggcgactttgtcagttttctgcaaac
aaaagtttacatacaatacctaactcaaaaaagacaaactgcaggaacaa
aaatggagaagagcctgaggaaaaggaggtccagcgacaggcccaaagtg
ggatccagttcaaggggaggccccaaggcccaaaactattactgaggcta
tggagtgctcacaaaaaggtgcctatcatgactgcccccacaaagaccaa
gcagctgaaagagtcaacgcagatatttataccttacccaatggacagaa
gctgctgacccctgtgtttgtattagggaaaagctggaagaagctgagga
ggagggcaaccctataagatggacccccgagaatctcagacattagcaca
aaacgggcatctaatatcagtgatatgggggccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_110091076_110091620
seq2: B6Ng01-061P17.b_48_592 (reverse)

seq1  AGCAAGCGTTGGCTGAAAGGACCCTGATATAGCTATCTCTTGTGAGACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGCGTTGGCTGAAAGGACCCTGATATAGCTATCTCTTGTGAGACTA  50

seq1  GACCGGGGCCTAGCAAACACGTAAGTGGATGCTCACAGTCAGCTATTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCGGGGCCTAGCAAACACGTAAGTGGATGCTCACAGTCAGCTATTGGA  100

seq1  TGGAGCACAGGGCCCCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCACAGGGCCCCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCT  150

seq1  AAAGGGATCTGCAACCCTGTAGGTGCAACAACATTATGAACTAACCAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGATCTGCAACCCTGTAGGTGCAACAACATTATGAACTAACCAGTA  200

seq1  CCCCCAGAGCTCATGACTCTAGCTGCATATGTATCAAAAGATGGCCTAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAGAGCTCATGACTCTAGCTGCATATGTATCAAAAGATGGCCTAGT  250

seq1  TGGCCATCACTGGAAAGAGAGGCCCATTGGATATGCAAACTTTATATGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCATCACTGGAAAGAGAGGCCCATTGGATATGCAAACTTTATATGCC  300

seq1  TCAGTACAGGGGAATGCCAGGGCCAAAAAATGGGAATGGGTGGGTAGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTACAGGGGAATGCCAGGGCCAAAAAATGGGAATGGGTGGGTAGGGA  350

seq1  AGTATGGGGGGAGGATATGGGGGACTTTTGGGATAGCATTCTAATTGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGGGGGGAGGATATGGGGGACTTTTGGGATAGCATTCTAATTGTAA  400

seq1  TTGAGGAAAATACATAATAATAAAAAATATTTTTAAAAAAACCACAGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGAAAATACATAATAATAAAAAATATTTTTAAAAAAACCACAGTAA  450

seq1  AAAGCAAAATAAGGCTATATTTTTCACAGTTTGATCATATTATTTTATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAAAATAAGGCTATATTTTTCACAGTTTGATCATATTATTTTATAA  500

seq1  ATCAGTAAATCCATGGAATATCTGGAAGGATTTTACAATGAATTC  545
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTAAATCCATGGAATATCTGGAAGGATTTTACAATGAATTC  545

seq1: chr11_109914064_109915048
seq2: B6Ng01-061P17.g_70_1053

seq1  GAATTCTCTTACCTTTAAAGAAAGTGAGATGAAAATAGATACATTTTAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTACCTTTAAAGAAAGTGAGATGAAAATAGATACATTTTAAC  50

seq1  ATATATGTTATACACGTGGAGAT------TATATATATATATATATATAT  94
      |||||||||||||||||||||||      |||||||||||||||||||||
seq2  ATATATGTTATACACGTGGAGATTATATATATATATATATATATATATAT  100

seq1  ATATATATATATATATATATATATATATCATGGAACTAGTGAAATTTTAT  144
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATATATATATATATATATATATATATATCATGGAACTAGGGAAATTTTAT  150

seq1  CAGAAAAATACATTTGAAATACTTTAAAGTATAAAATTGGTTTATCTTAT  194
      ||||||||||||||| ||||| ||||||||||||||||||||||||||||
seq2  CAGAAAAATACATTTTAAATATTTTAAAGTATAAAATTGGTTTATCTTAT  200

seq1  ACCAACCAAAGATATTTTTAAAGTATTAGTACTTAACTCCATCACAAAAA  244
      ||| | |||||||||||||||||||||| |||||||              
seq2  ACCGAGCAAAGATATTTTTAAAGTATTATTACTTAA-GGGGGGGGGGGGG  249

seq1  TAAAAACAGTAAAGATACTTACAATATAGAAGCAAAGTGACCAAAGGCCA  294
         | | |||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAGAGTAAAGATACTTACAATATAGAAGCAAAGTGACCAAAGGCCA  299

seq1  CTATTTTTTCTCCCCTTGCGATAAATGAATGAAATCACATAAGTCATGAA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTTTCTCCCCTTGCGATAAATGAATGAAATCACATAAGTCATGAA  349

seq1  AATAACTGACATGGCATAGCCACCAACATAGAGAATCTGAAACCAATAGG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTGACATGGCATAGCCACCAACATAGAGAATCTGAAACCAATAGG  399

seq1  AATATGAGAATGAATATTGTGACATGTGAAAACATTTGAATGTGCTAATG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGAGAATGAATATTGTGACATGTGAAAACATTTGAATGTGCTAATG  449

seq1  TCATGGAACAATGTCTTCATGTTCCTACATTTATAATGATTTAAATATCA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGAACAATGTCTTCATGTTCCTACATTTATAATGATTTAAATATCA  499

seq1  GAGAGAGTGGTAAAGTGGGTGACTTGGGATTGTCACTTCTCTGCAGAAAC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGTGGTAAAGTGGGTGACTTGGGATTGTCACTTCTCTGCAGAAAC  549

seq1  CTCTAAAACACAAACAACTAGGAGAGGCGACTTTGTCAGTTTTCTGCAAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAAACACAAACAACTAGGAGAGGCGACTTTGTCAGTTTTCTGCAAA  599

seq1  CAAAAGTTTACATACAATACCTAACTCAAAAAAGACAAACTGCAGGAACA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGTTTACATACAATACCTAACTCAAAAAAGACAAACTGCAGGAACA  649

seq1  AAAATGGAGAAGAGCCTGAGGAAAAGGAGGTCCAGCGACAGGCCCAAAGT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGAGAAGAGCCTGAGGAAAAGGAGGTCCAGCGACAGGCCCAAAGT  699

seq1  GGGATCCAGTTCAAGGGGAGGCCCCAAGGCCCAAAACTATTACTGAGGCT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCCAGTTCAAGGGGAGGCCCCAAGGCCCAAAACTATTACTGAGGCT  749

seq1  ATGGAGTGCTCACAAAAAGGTGCCTATCATGACTGCCCCCACAAAGACCC  794
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATGGAGTGCTCACAAAAAGGTGCCTATCATGACTGCCCCCACAAAGA-CC  798

seq1  AAGCAGCTGAAAGAGTCAAACGCAGATATTTATACC-TAACCAATGGACA  843
      ||||||||||||||||| |||||||||||||||||| || ||||||||||
seq2  AAGCAGCTGAAAGAGTC-AACGCAGATATTTATACCTTACCCAATGGACA  847

seq1  GAAGCTGCTGACCCCTGTGTTTGAATTAGGGAAAAGCTGGAAGAAGCTGA  893
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GAAGCTGCTGACCCCTGTGTTTGTATTAGGGAAAAGCTGGAAGAAGCTGA  897

seq1  GGAGGAGGGCAACCCTATAAGATGGACCCCCGAGACATCTCAGACATTTA  943
      ||||||||||||||||||||||||||||||||||| |||||||||| |||
seq2  GGAGGAGGGCAACCCTATAAGATGGACCCCCGAGA-ATCTCAGACA-TTA  945

seq1  GCCACCAAAACAGGCAGCCTATACCAGCTGATATGGGGGCCC  985
      ||   |||||| |||| |  ||| ||| ||||||||||||||
seq2  GC--ACAAAACGGGCATCTAATATCAG-TGATATGGGGGCCC  984