BAC Information

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BAC

Clone NameB6Ng01-062D09
Chromosome11 (Build37)
Map Location 114,166,830 - 114,313,977
singlet/doubletdoublet
Overlap geneLOC634710, 4932435O22Rik
Upstream geneSlc39a11, Sstr2, Cog1, D11Wsu99e, D11Wsu47e, D11Ertd636e, Cdc42ep4, Sdk2, LOC100041739
Downstream geneRpl38, Ttyh2, Dnaic2, Kif19a, 1500005I02Rik, Gpr142, Gprc5c, Cd300a, Cd300lb, Cd300c, 4732429D16Rik, Cd300d, LOC629970, LOC100043123, LOC100043125, Clm3, Cd300e, Cd300lf, Rab37, Slc9a3r1, Nat9, Tmem104, Grin2c, Fdxr, Fads6, Otop2, Ush1g, Otop3, C630004H02Rik, Cdr2l, Ict1, Atp5h, Kctd2, 4933422H20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062D09.bB6Ng01-062D09.g
ACCDH882678DH882679
length1,164761
definitionDH882678|Mus musculus domesticus DNA, BAC clone: B6Ng01-062D09, 5' end.DH882679|Mus musculus domesticus DNA, BAC clone: B6Ng01-062D09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,312,796 - 114,313,977)(114,166,830 - 114,167,586)
sequence
gaattctattgtttgtctttcagagcaagccggggaatttccatggtggt
atgcatgtactgaatatatccccgttctgtaacttatcatccctatttcc
ctttgtcactccaacccaccaccaccccatcctggccgggtgcggagcct
tctccagagccagccagagggtctctatattccatcttttccaagagtca
gctcaaaagacacaccctccacattgccggtccatcttcttccctgaatc
acccctaccccgccttttgcactgcccctccccgccccaaacaagtaatc
tctctccttgggattctcggaacgctttctctactccatcatggtcccca
tcaatttcccttcctcatcctgttttcccacctgcatcccttatatcatc
tccgacttggcaagctccttaacgacaggagtcatagctcactcgccttt
atggtcgcaccgcacccagcgctgtgaatgttgactgaatgataagaaac
ccaacttggtgacatttgggggattcatgtcatccttcgaaggtcgttcg
tctttgccttgctgttgaagttgggagcatcttttggggagtggcaaaga
gaagaaattctgtcttctgagttatcaatccatcaacagcctttccaggt
cagttactgtgtgatgctgttaggtaccaaggaggcaacatggaggtcag
ggaccaaccagatgtgtcttaccacctcgcagatccttcctagtgaactg
aaaactccccgctctacaattcagccaaactgtccaagaatcctatgctg
cagccatcttggatcttacaatccattgtcctgcacctttctcgaccttt
acagacttccttcctcactgtcctgctcttagtcagactgcccttagtca
aacacatctctttccattcattgttgcttagttttctactgctcagctca
tcctctgctctctgtgtcacacaccaactttaatatttacaacatcagaa
gtaagggccacatgttctcttccagcatgtttcagattatttggtaaact
gactgctgaagtttccaccacttcagggaaggtggatcctgcattcatca
gctattcacttgtgtcatctttgcctaagataaagacatggccctacagt
gcagtgtgggagcc
gaattctccccctgactcacagcaggggcagggcgagggcctcctggcat
tgccacaacagcatggagtctctatgcagcccctgagttcacagcctctg
gagaacagggtcacaggctcttgtgggcccttctagctgagcacacccca
gacgtggggatcacagtcccttcccacatcccagcaggaccaggtctgcc
tctgtgcgcaagctgtactaagtcccatcctggctccagtcatttccacc
aagcctgttctgcagctcaactggcttcccctctacctctgaaagagtct
caatctgccatttctttccaaagtcatttccaataatcccccgttggctc
tggaagggtcccccaggccacctgatgcctgggtgtctccagtcacaggc
agtccgttctcatccatgccatctgcagacagctgggcccgatgggaagc
tctgaaatcccattgccaacaaaatggaactctctctaggtcccactgtg
acacaagtatctctgtcaccacaccagaataattgtgcattaaagggatg
tcctggggcaggacctgtatttatgctgctttataaacagaaagcctttt
aagaagttaattgtgatggtgggtggtggtggtgacttcccagggagatg
aagagtaccctaatgacaagactgggggggcccgtgagcacctgatgagg
gctggggggtcattcggaaagagggctgggggtccaccgggctctgaggg
aatgagggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_114312796_114313977
seq2: B6Ng01-062D09.b_47_1210 (reverse)

seq1  GGCTCCCACAACTGCACTGTAGTGGCATAGTCTTTTATCCTAAGACAAAG  50
      ||||||||| |||||||||||| | ||| ||| ||||| || || |||||
seq2  GGCTCCCAC-ACTGCACTGTAGGGCCAT-GTC-TTTAT-CTTAGGCAAAG  46

seq1  AATGTACTACA-AAGTGAATAGCTGATGAATGCAGGATCCACCTTCCCCT  99
       |||    ||| ||||||||||||||||||||||||||||||||| ||||
seq2  -ATG----ACACAAGTGAATAGCTGATGAATGCAGGATCCACCTT-CCCT  90

seq1  GAAGTGTGTGGAAACTCTCAAGCAGTCAGTTTTACCAAATAAATCCTGAA  149
      |||||| ||||||||| || ||||||||| ||||||||||||   |||||
seq2  GAAGTG-GTGGAAACT-TC-AGCAGTCAG-TTTACCAAATAA--TCTGAA  134

seq1  ACATTGCTTGGAAGAG-ACATGTGGCCCTAACTTCTGATGTTTGTAAATA  198
      ||| ||| |||||||| |||||||||||| |||||||||| |||||||||
seq2  ACA-TGC-TGGAAGAGAACATGTGGCCCTTACTTCTGATG-TTGTAAATA  181

seq1  TTAAAGTTGGTTGTGTGACACAGAGAGCAGAGGATGAGCTGAGCAGTAGA  248
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTTGG-TGTGTGACACAGAGAGCAGAGGATGAGCTGAGCAGTAGA  230

seq1  AAACTAAGCAACAATGAATGGAAAGAGATGTGTTTGACTAAGGGCAGTCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAAGCAACAATGAATGGAAAGAGATGTGTTTGACTAAGGGCAGTCT  280

seq1  GACTAAGAGCAGGACAGTGAGGAAGGAAGTCTGTAAAGGTCGAGAAAGGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAGAGCAGGACAGTGAGGAAGGAAGTCTGTAAAGGTCGAGAAAGGT  330

seq1  GCAGGACAATGGATTGTAAGATCCAAGATGGCTGCAGCATAGGATTCTTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGACAATGGATTGTAAGATCCAAGATGGCTGCAGCATAGGATTCTTG  380

seq1  GACAGTTTGGCTGAATTGTAGAGCGGGGAGTTTTCAGTTCACTAGGAAGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTTTGGCTGAATTGTAGAGCGGGGAGTTTTCAGTTCACTAGGAAGG  430

seq1  ATCTGCGAGGTGGTAAGACACATCTGGTTGGTCCCTGACCTCCATGTTGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCGAGGTGGTAAGACACATCTGGTTGGTCCCTGACCTCCATGTTGC  480

seq1  CTCCTTGGTACCTAACAGCATCACACAGTAACTGACCTGGAAAGGCTGTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTGGTACCTAACAGCATCACACAGTAACTGACCTGGAAAGGCTGTT  530

seq1  GATGGATTGATAACTCAGAAGACAGAATTTCTTCTCTTTGCCACTCCCCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGATTGATAACTCAGAAGACAGAATTTCTTCTCTTTGCCACTCCCCA  580

seq1  AAAGATGCTCCCAACTTCAACAGCAAGGCAAAGACGAACGACCTTCGAAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGCTCCCAACTTCAACAGCAAGGCAAAGACGAACGACCTTCGAAG  630

seq1  GATGACATGAATCCCCCAAATGTCACCAAGTTGGGTTTCTTATCATTCAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACATGAATCCCCCAAATGTCACCAAGTTGGGTTTCTTATCATTCAG  680

seq1  TCAACATTCACAGCGCTGGGTGCGGTGCGACCATAAAGGCGAGTGAGCTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACATTCACAGCGCTGGGTGCGGTGCGACCATAAAGGCGAGTGAGCTA  730

seq1  TGACTCCTGTCGTTAAGGAGCTTGCCAAGTCGGAGATGATATAAGGGATG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCCTGTCGTTAAGGAGCTTGCCAAGTCGGAGATGATATAAGGGATG  780

seq1  CAGGTGGGAAAACAGGATGAGGAAGGGAAATTGATGGGGACCATGATGGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGGGAAAACAGGATGAGGAAGGGAAATTGATGGGGACCATGATGGA  830

seq1  GTAGAGAAAGCGTTCCGAGAATCCCAAGGAGAGAGATTACTTGTTTGGGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGAAAGCGTTCCGAGAATCCCAAGGAGAGAGATTACTTGTTTGGGG  880

seq1  CGGGGAGGGGCAGTGCAAAAGGCGGGGTAGGGGTGATTCAGGGAAGAAGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGAGGGGCAGTGCAAAAGGCGGGGTAGGGGTGATTCAGGGAAGAAGA  930

seq1  TGGACCGGCAATGTGGAGGGTGTGTCTTTTGAGCTGACTCTTGGAAAAGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCGGCAATGTGGAGGGTGTGTCTTTTGAGCTGACTCTTGGAAAAGA  980

seq1  TGGAATATAGAGACCCTCTGGCTGGCTCTGGAGAAGGCTCCGCACCCGGC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATATAGAGACCCTCTGGCTGGCTCTGGAGAAGGCTCCGCACCCGGC  1030

seq1  CAGGATGGGGTGGTGGTGGGTTGGAGTGACAAAGGGAAATAGGGATGATA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATGGGGTGGTGGTGGGTTGGAGTGACAAAGGGAAATAGGGATGATA  1080

seq1  AGTTACAGAACGGGGATATATTCAGTACATGCATACCACCATGGAAATTC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACAGAACGGGGATATATTCAGTACATGCATACCACCATGGAAATTC  1130

seq1  CCCGGCTTGCTCTGAAAGACAAACAATAGAATTC  1182
      ||||||||||||||||||||||||||||||||||
seq2  CCCGGCTTGCTCTGAAAGACAAACAATAGAATTC  1164

seq1: chr11_114166830_114167586
seq2: B6Ng01-062D09.g_68_828

seq1  GAATTCTCCCCCTGACTCACAGCAGGGGCAGGGCGAGGGCCTCCTGGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCCCTGACTCACAGCAGGGGCAGGGCGAGGGCCTCCTGGCAT  50

seq1  TGCCACAACAGCATGGAGTCTCTATGCAGCCCCTGAGTTCACAGCCTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACAACAGCATGGAGTCTCTATGCAGCCCCTGAGTTCACAGCCTCTG  100

seq1  GAGAACAGGGTCACAGGCTCTTGTGGGCCCTTCTAGCTGAGCACACCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACAGGGTCACAGGCTCTTGTGGGCCCTTCTAGCTGAGCACACCCCA  150

seq1  GACGTGGGGATCACAGTCCCTTCCCACATCCCAGCAGGACCAGGTCTGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTGGGGATCACAGTCCCTTCCCACATCCCAGCAGGACCAGGTCTGCC  200

seq1  TCTGTGCGCAAGCTGTACTAAGTCCCATCCTGGCTCCAGTCATTTCCACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGCGCAAGCTGTACTAAGTCCCATCCTGGCTCCAGTCATTTCCACC  250

seq1  AAGCCTGTTCTGCAGCTCAACTGGCTTCCCCTCTACCTCTGAAAGAGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTGTTCTGCAGCTCAACTGGCTTCCCCTCTACCTCTGAAAGAGTCT  300

seq1  CAATCTGCCATTTCTTTCCAAAGTCATTTCCAATAATCCCCCGTTGGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTGCCATTTCTTTCCAAAGTCATTTCCAATAATCCCCCGTTGGCTC  350

seq1  TGGAAGGGTCCCCCAGGCCACCTGATGCCTGGGTGTCTCCAGTCACAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGGTCCCCCAGGCCACCTGATGCCTGGGTGTCTCCAGTCACAGGC  400

seq1  AGTCCGTTCTCATCCATGCCATCTGCAGACAGCTGGGCCCGATGGGAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCGTTCTCATCCATGCCATCTGCAGACAGCTGGGCCCGATGGGAAGC  450

seq1  TCTGAAATCCCATTGCCAACAAAATGGAACTCTCTCTAGGTCCCACTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAATCCCATTGCCAACAAAATGGAACTCTCTCTAGGTCCCACTGTG  500

seq1  ACACAAGTATCTCTGTCACCACACCAGAATAATTGTGCATTAAAGGGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAGTATCTCTGTCACCACACCAGAATAATTGTGCATTAAAGGGATG  550

seq1  TCCTGGGGCAGGACCTGTATTTATGCTGCTTTATAAACAGAAAGCCTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGGCAGGACCTGTATTTATGCTGCTTTATAAACAGAAAGCCTTTT  600

seq1  AAGAAGTTAATTGTGATGGTGGGTGGTGGTGGTGACTTCCCAGGGAGATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTTAATTGTGATGGTGGGTGGTGGTGGTGACTTCCCAGGGAGATG  650

seq1  AAGAGTACCCTAATGACAAGACT--GGGGGCCCGTGAGCACCTGACGAGG  698
      |||||||||||||||||||||||  |||||||||||||||||||| ||||
seq2  AAGAGTACCCTAATGACAAGACTGGGGGGGCCCGTGAGCACCTGATGAGG  700

seq1  GCAGGGGGGCCATTCGG-AAGAGGGCT-GGGGTCCACCGGGCTCTGAGGG  746
      || |||||| ||||||| ||||||||| ||||||||||||||||||||||
seq2  GCTGGGGGGTCATTCGGAAAGAGGGCTGGGGGTCCACCGGGCTCTGAGGG  750

seq1  AAGGAGGGAGG  757
      || ||||||||
seq2  AATGAGGGAGG  761