BAC Information

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BAC

Clone NameB6Ng01-064N19
Chromosome11 (Build37)
Map Location 118,819,902 - 118,820,940
singlet/doubletsinglet
Overlap genenone
Upstream geneSocs3, Pgs1, Dnahc17, Pscd1, Usp36, Timp2, Ddc8, Lgals3bp, Cant1, C1qtnf1, D230014K01Rik, D11Bwg0517e
Downstream geneEnpp7, Cbx2, Cbx8, Cbx4, Tbc1d16, Ccdc40, Gaa, Eif4a3, Card14, Sgsh, Slc26a11, LOC672511, Rnf213, A730011L01Rik, Nptx1, 4932417H02Rik, Chmp6, Baiap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064N19.bB6Ng01-064N19.g
ACCDH884524DH884525
length8991,026
definitionDH884524|Mus musculus domesticus DNA, BAC clone: B6Ng01-064N19, 5' end.DH884525|Mus musculus domesticus DNA, BAC clone: B6Ng01-064N19, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcattcaggggagctacaagtgtctaaagataggggggcagagaag
tggagacctctctacctggaaacagaagtcgccatgatttcacttctgcg
ataccagcgtagggattgttccctctacttaggaagcagaggagacctgg
cgtgggagccacctgagcctaccttatggaataatagggcaggccttctt
ggttcctctgaatcctatctcctcctgaatatgctctggaatgattttgc
taaaacatcaagctaggtctggggatgtagctggctggtaaagttctcgc
ctagcacgcagaagccctgggtttcattcccagcgctgcataaaccaggc
atggtgatacctataatcccagcattcaagatgtggaggcaggaggatca
gaagttcaaggtcattgtgttggttggaatgagattggcccataggatag
tatattggaatgcttacgccacagttggtggaactgtttgggaagggttg
ggatgtggccttgttggaggaggtgtgtcactgagagataggttttgagg
tttaaaaagtatcctgttagtcctgctgcccccaccctcccccctacttc
tacatcaggatgtaagttcccagctactgctctgtctccatgcctgcctg
cctccctgcctgccctgccctgccctgccctggctggctgcctggctgcc
tgcctacctgcctgcctgcctcctgcctccctgcctgcctgcctgctgcc
tgcctgcctgcctgcctgcctgctgcctgcctcctgcctgcctgactgcc
tgcttgcttgctgctgcctgctgcctctgcctcttgcttcctgactgcct
gcctgcctgttgctgttgcttactgtctgctgctgctcttgctgctgct
gaattcaatcccacatcccggatggtggaaggagagaactgactcccaca
gttgttctctgacatacttcacatgcatgacataacacacacacacacta
gcatacttaaataaaacatagacttgtcagccccatagaccatacccctc
tttcttctggtgtccagagctctcccctgggccagaggccacatactcct
ggtttttatctcaccaaggtcacaagtcaacagccaagctgtagacccag
ttactcctcctctgagggtccctcctttgctttcccctggcccttcctgg
gcccccttactgctgacctctaacatcaggtagcccaagcttccagggaa
cttgcaaagctgccctctgctccaagcctggagggtaagcagagtctcca
ggaaggagctgcctttgaactcacactgatcctaggaagtttctcccacc
agatcctgggtgagacattgcagagagtccaaggggagacaggtagaagg
agctgaaactgtgccaaggaaccttccatgcagtgggaaaggtgggctgc
tcatagctgacttgggggtgggggaggacaccagggccttggaagaagtc
accagtttcatttctggagcccatgtgtggaaggacctgacacacaccgg
tgtgtccagccttggtaagagcacagaggtccgactccactcggcctttt
ggtcccagcgcacagaaccaagctctgtttctgccacattgtcatcctag
aagcaagttcccgacacttcttcatcccacccttctgacactgcatgtaa
gaccgcagctatcaggagtgacagaaaggcctctgggaagattttatacc
cttagaagaacctagtggtgacctggaccctggagaaggactcgactgcc
ctgaactgctggtgacttcttgtgtagaaatggctaccatcctatcagtc
agcaagttgcttgtagagcccatcaggacgggtctgaggctggtgatgtt
cttctgaaaaggggaaggtggggaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_118819902_118820940
seq2: B6Ng01-064N19.g_68_1092

seq1  GAATTCAATCCCACATCCCGGATGGTGGAAGGAGAGAACTGACTCCCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCCCACATCCCGGATGGTGGAAGGAGAGAACTGACTCCCACA  50

seq1  GTTGTTCTCTGACATACTTCACATGCATGACATAACACACACACACACTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTCTCTGACATACTTCACATGCATGACATAACACACACACACACTA  100

seq1  GCATACTTAAATAAAACATAGACTTGTCAGCCCCATAGACCATACCCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACTTAAATAAAACATAGACTTGTCAGCCCCATAGACCATACCCCTC  150

seq1  TTTCTTCTGGTGTCCAGAGCTCTCCCCTGGGCCAGAGGCCACATACTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCTGGTGTCCAGAGCTCTCCCCTGGGCCAGAGGCCACATACTCCT  200

seq1  GGTTTTTATCTCACCAAGGTCACAAGTCAACAGCCAAGCTGTAGACCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTATCTCACCAAGGTCACAAGTCAACAGCCAAGCTGTAGACCCAG  250

seq1  TTACTCCTCCTCTGAGGGTCCCTCCTTTGCTTTCCCCTGGCCCTTCCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCCTCCTCTGAGGGTCCCTCCTTTGCTTTCCCCTGGCCCTTCCTGG  300

seq1  GCCCCCTTACTGCTGACCTCTAACATCAGGTAGCCCAAGCTTCCAGGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCTTACTGCTGACCTCTAACATCAGGTAGCCCAAGCTTCCAGGGAA  350

seq1  CTTGCAAAGCTGCCCTCTGCTCCAAGCCTGGAGGGTAAGCAGAGTCTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAAAGCTGCCCTCTGCTCCAAGCCTGGAGGGTAAGCAGAGTCTCCA  400

seq1  GGAAGGAGCTGCCTTTGAACTCACACTGATCCTAGGAAGTTTCTCCCACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAGCTGCCTTTGAACTCACACTGATCCTAGGAAGTTTCTCCCACC  450

seq1  AGATCCTGGGTGAGACATTGCAGAGAGTCCAAGGGGAGACAGGTAGAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCTGGGTGAGACATTGCAGAGAGTCCAAGGGGAGACAGGTAGAAGG  500

seq1  AGCTGAAACTGTGCCAAGGAACCTTCCATGCAGTGGGAAAGGTGGGCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAAACTGTGCCAAGGAACCTTCCATGCAGTGGGAAAGGTGGGCTGC  550

seq1  TCATAGCTGACTTGGGGGTGGGGGAGGACACCAGGGCCTTGGAAGAAGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGCTGACTTGGGGGTGGGGGAGGACACCAGGGCCTTGGAAGAAGTC  600

seq1  ACCAGTTTCATTTCTGGAGCCCATGTGTGGAAGGACCTGACACACACCGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTTTCATTTCTGGAGCCCATGTGTGGAAGGACCTGACACACACCGG  650

seq1  TGTGTCCAGCCTTGGTAAGAGCACAGAGGTCCGACTCCACTCGGCCTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCCAGCCTTGGTAAGAGCACAGAGGTCCGACTCCACTCGGCCTTTT  700

seq1  GGTCCCAGCGCACAGAACCAAGCTCTGTTTCTGCCACATTGTCATCCTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCAGCGCACAGAACCAAGCTCTGTTTCTGCCACATTGTCATCCTAG  750

seq1  AAGCAAGTTCCCGACACTTCTTCATCCCACCCTTCTGACACTGCATGTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGTTCCCGACACTTCTTCATCCCACCCTTCTGACACTGCATGTAA  800

seq1  GACCGCAGGCTATCAGGAGTGACAGAAAGGCCTTCTGGGAAGATTTTATA  850
      ||||||| |||||||||||||||||||||||| |||||||||||||||||
seq2  GACCGCA-GCTATCAGGAGTGACAGAAAGGCC-TCTGGGAAGATTTTATA  848

seq1  CCCTTAGGAAGAACCTAGTGGTGACCTGGACCCTGGAGAAGGACTCGGAC  900
      |||||| ||||||||||||||||||||||||||||||||||||||| |||
seq2  CCCTTA-GAAGAACCTAGTGGTGACCTGGACCCTGGAGAAGGACTC-GAC  896

seq1  TGCCCTGAACTGCTGGGTGAACCTTCTGGTGTAGAAATGGCTACCATCCT  950
      |||||||||||||| |||||  ||||| ||||||||||||||||||||| 
seq2  TGCCCTGAACTGCT-GGTGA--CTTCTTGTGTAGAAATGGCTACCATCC-  942

seq1  TATCAGGTCAGCAAGGTTGCTTGTGAGAGCCCATCAGGAACGGGTCTGTA  1000
      ||||| |||||||| ||||||||| ||||||||||||| ||||||||| |
seq2  TATCA-GTCAGCAA-GTTGCTTGT-AGAGCCCATCAGG-ACGGGTCTG-A  987

seq1  GGCTGGTGATGTTCTCTGAGAGAAGGGGAGGGTGGGGAA  1039
      ||||||||||||||| |  || ||||||| |||||||||
seq2  GGCTGGTGATGTTCT-TCTGAAAAGGGGAAGGTGGGGAA  1025