BAC Information

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BAC

Clone NameB6Ng01-065E22
Chromosome10 (Build37)11 (Build37)
Map Location 17,254,346 - 17,254,75150,429,900 - 50,430,958
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC546472, LOC100039576, LOC627511
Downstream geneCited2, Txlnb, LOC665321, Heca, 3110003A17Rik, Reps1, LOC100039660, Ccdc28a, LOC627646, Nhsl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065E22.bB6Ng01-065E22.g
ACCDH884818DH884819
length8711,060
definitionDH884818|Mus musculus domesticus DNA, BAC clone: B6Ng01-065E22, 5' end.DH884819|Mus musculus domesticus DNA, BAC clone: B6Ng01-065E22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(17,254,346 - 17,254,751)(50,429,900 - 50,430,958)
sequence
gaattccaacacattacaatatgaacaacctttagactatcacagtaaat
tgaataatatagttccctaggacaagtatcatacaaattcactgatttac
aggtccagagtggtttaattcgaacaccaaaatcagaatgagaacatcca
ggacccaggggaccagtcgaggagttaataattaacggtgggagattcag
cttcgcaagacagacagagtcctgtgcatcgatggtgtgacctttgcgtt
ttcacacgaatggcattaatgctacatacagactgtgcacttaaaactgg
tgaagatcgtctgcatacctgggcatgactctagggctctcacgtgcttg
gacagccctctatcacacctatatatccctagctctccttagttttgatt
cttttggttttttgtttgattggttgattttttttttttcaaaacaggat
ttctctaggtagccccgactgtactggaactcactctatagaccaggcta
gcctcaaaatcagagatccacctgactctgcctcatgagtgccacccaac
tacatttattttgaaacaagagctcaccaaggctggccttgaacttgaga
tcctcctgcttcaacttcccaggatgctggggttataggctggagcatct
ggcttgccgttctctccccagcccttctttatttggagtgcgtggaagca
aatgtacatttgtgtgctcgtggagaggcatgtgtcaagcatcctcctca
atcccttagttatttatatgggtgcacaagtatgtagtgtgaatgatgta
catacccatgtgtgtatgtgtgcgtgtgcatgcatgcgtgcgtgcatgtg
tgtgtgtgtgtgtgtgtgtgt
gaattctcaccctccagaaccccaatagactcatctacagggtgccttgg
tcatggtgccttaggacagtaatagaagagtaatggatgctgcctcgtgt
cctggaggagcaaaggggaataaggatggctgtccttgttgtcaacatat
cagaggtggactagaacaaaagaaaacaatgacttccaggggtctcttac
ctggaaattctgagctctgccaagggagacatctatagtgacgtggttgt
ctcgaaggctgtgtgcagttgagaggagctaacaggtaggttgacagcag
atggggcagcgactgatgcttggtgttgggctagtcatatccagagcttc
tgaacatcccaggatactgagtactgaccctggggctatggtgtggtcct
cccctctctcacatccccaggccctgaggaggctccatcccttctctgaa
ctcaagagtgggtatgttggggctggagagatggctcagcggttaagaac
actgactactcttccagaggtcctgagttcaattcccagcaaccacatgg
tggctcacaaccatctgtaatgagatccggcgccctcttctggtgtgtct
gaagacagtgacagtgtactcacatatattaaataaataaaataaaacct
taaaaagaaaatcgagtgggtcccttccattagtttgaacttcacagttg
tgagcctgggatctcaaggcaacatggatttgtcccggggttggcttggg
agggaatgcacacgagattgctctttagcctacttcctgactcagaactc
tgtaatttccggagtgataaggggcggcgggaacatcttttattataatt
attctaagacctggtctagtgccctgctttttcacagaacagcttctaag
agtcctggaatcagcagagggataagatcatcttttgtagggctatgaga
tgtctgggtggctgactcttctccaatagcttcaagatggggagctggct
gtgacagtgtcaaggcagattggaagggggttggttgatactcacctcac
tactctggac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_17254346_17254751
seq2: B6Ng01-065E22.b_445_914

seq1  TTTTGGTTTTTTGTTT--TTCCTCCTCGGGATTTGTAGTTT------ACA  42
      ||||||||||||||||  ||  |      ||||| |  |||      |||
seq2  TTTTGGTTTTTTGTTTGATTGGT-----TGATTTTTTTTTTTTCAAAACA  45

seq1  GTATTACCAATTCCTAGTCAGAGC------TACT---------ATTATTG  77
      | |||     |  ||||  ||  |      ||||           ||| |
seq2  GGATT-----TCTCTAGGTAGCCCCGACTGTACTGGAACTCACTCTATAG  90

seq1  TGCA----------ATGCTCAGCGTTCATACCTAGCTATGGCT-------  110
        ||          |   |||| | ||  ||||  || || ||       
seq2  ACCAGGCTAGCCTCAAAATCAGAGATC-CACCTGACTCTGCCTCATGAGT  139

seq1  ---------CTATAGATAAGTAGAAACTGGA---CATAAAGTCAAGGCCA  148
               ||| |  ||  | |||||  ||   ||  ||| |  |||| 
seq2  GCCACCCAACTACATTTATTTTGAAACAAGAGCTCACCAAGGC-TGGCC-  187

seq1  TATTCAGC-TCAGATGC-ACAGCCTGAAGGACATTCTTGACA--ATCCTG  194
        || | | | |||| |  | || | ||       |||  ||  || |||
seq2  --TTGAACTTGAGATCCTCCTGCTTCAA-------CTTCCCAGGATGCTG  228

seq1  AGG-TCCATGTTACAGTCACTGTGGAATTCTATAATTGTCTCTGCATCAG  243
       || |  | | |  || || | |||  | |     || ||||  || |  
seq2  GGGTTATAGGCTGGAG-CA-TCTGGCTTGC---CGTTCTCTCCCCAGCCC  273

seq1  AGATGTATT---AGTGTGGGTAAG-----GTCACTGTTATCTACT--TTG  283
         | ||||   |||| | | |||     || ||  || | | ||  | |
seq2  TTCTTTATTTGGAGTGCGTGGAAGCAAATGT-ACATTTGTGTGCTCGTGG  322

seq1  ATATTGTGAATGTGT--AGCTTGTCTTTCTCAGGC--------------A  317
      | |    | ||||||  |||   || | ||||  |              |
seq2  AGA---GGCATGTGTCAAGC--ATCCTCCTCAATCCCTTAGTTATTTATA  367

seq1  T-GGTCCATA---ATGTGAAATGACTTGTGTAGA---CTAAGGGT-CAAG  359
      | ||| || |   ||||    ||| |  |||| |   | | | ||  | |
seq2  TGGGTGCACAAGTATGTAGTGTGAATGATGTACATACCCATGTGTGTATG  417

seq1  TGTGTGTGT------ATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  403
      |||| ||||      ||| ||| |||  ||||||||||||||||||||||
seq2  TGTGCGTGTGCATGCATGCGTGCGTGCATGTGTGTGTGTGTGTGTGTGTG  467

seq1  TGT  406
      |||
seq2  TGT  470

seq1: chr11_50429900_50430958
seq2: B6Ng01-065E22.g_69_1128

seq1  GAATTCTCACCCTCCAGAACCCCAATAGACTCATCTACAGGGTGCCTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACCCTCCAGAACCCCAATAGACTCATCTACAGGGTGCCTTGG  50

seq1  TCATGGTGCCTTAGGACAGTAATAGAAGAGTAATGGATGCTGCCTCGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGTGCCTTAGGACAGTAATAGAAGAGTAATGGATGCTGCCTCGTGT  100

seq1  CCTGGAGGAGCAAAGGGGAATAAGGATGGCTGTCCTTGTTGTCAACATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGGAGCAAAGGGGAATAAGGATGGCTGTCCTTGTTGTCAACATAT  150

seq1  CAGAGGTGGACTAGAACAAAAGAAAACAATGACTTCCAGGGGTCTCTTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGTGGACTAGAACAAAAGAAAACAATGACTTCCAGGGGTCTCTTAC  200

seq1  CTGGAAATTCTGAGCTCTGCCAAGGGAGACATCTATAGTGACGTGGTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAATTCTGAGCTCTGCCAAGGGAGACATCTATAGTGACGTGGTTGT  250

seq1  CTCGAAGGCTGTGTGCAGTTGAGAGGAGCTAACAGGTAGGTTGACAGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAAGGCTGTGTGCAGTTGAGAGGAGCTAACAGGTAGGTTGACAGCAG  300

seq1  ATGGGGCAGCGACTGATGCTTGGTGTTGGGCTAGTCATATCCAGAGCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGCAGCGACTGATGCTTGGTGTTGGGCTAGTCATATCCAGAGCTTC  350

seq1  TGAACATCCCAGGATACTGAGTACTGACCCTGGGGCTATGGTGTGGTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACATCCCAGGATACTGAGTACTGACCCTGGGGCTATGGTGTGGTCCT  400

seq1  CCCCTCTCTCACATCCCCAGGCCCTGAGGAGGCTCCATCCCTTCTCTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCTCTCACATCCCCAGGCCCTGAGGAGGCTCCATCCCTTCTCTGAA  450

seq1  CTCAAGAGTGGGTATGTTGGGGCTGGAGAGATGGCTCAGCGGTTAAGAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGAGTGGGTATGTTGGGGCTGGAGAGATGGCTCAGCGGTTAAGAAC  500

seq1  ACTGACTACTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACTACTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGG  550

seq1  TGGCTCACAACCATCTGTAATGAGATCCGGCGCCCTCTTCTGGTGTGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCACAACCATCTGTAATGAGATCCGGCGCCCTCTTCTGGTGTGTCT  600

seq1  GAAGACAGTGACAGTGTACTCACATATATTAAATAAATAAAAT-AAACCT  649
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GAAGACAGTGACAGTGTACTCACATATATTAAATAAATAAAATAAAACCT  650

seq1  TAAAAAGAAAATCGAGTGGGTCCCTTCCATTAGTTTGAACTTCACAGTTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGAAAATCGAGTGGGTCCCTTCCATTAGTTTGAACTTCACAGTTG  700

seq1  TGAGCCT-GGATCTCAAGGCAACATGGATTTGTCCCGGGGTTGGCTTGGG  748
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCTGGGATCTCAAGGCAACATGGATTTGTCCCGGGGTTGGCTTGGG  750

seq1  AGGGAATGCACACGAGATTGCTCTTTAGCCTACTTCCTGACTCAGAACTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAATGCACACGAGATTGCTCTTTAGCCTACTTCCTGACTCAGAACTC  800

seq1  TGTAATTTCCGGAGTGATAAGGGGCGGCGGGAACATCTTTTATTATAATT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATTTCCGGAGTGATAAGGGGCGGCGGGAACATCTTTTATTATAATT  850

seq1  ATTCTAAGACCTGGTCTTAGTGCCCTGCTTTTTCACAGAACAGCTTCTAA  898
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ATTCTAAGACCTGGTC-TAGTGCCCTGCTTTTTCACAGAACAGCTTCTAA  899

seq1  GAGTCCTGGAATCAGCAGAGGGATAAGATCATCTTTTGT-GTGCTAATGA  947
      ||||||||||||||||||||||||||||||||||||||| | ||| ||||
seq2  GAGTCCTGGAATCAGCAGAGGGATAAGATCATCTTTTGTAGGGCT-ATGA  948

seq1  GATGTCT-GGTGGCTGACTC-TCTCCCATAGCTTC-AGATGGGGAGCTGG  994
      ||||||| |||||||||||| ||||| |||||||| ||||||||||||||
seq2  GATGTCTGGGTGGCTGACTCTTCTCCAATAGCTTCAAGATGGGGAGCTGG  998

seq1  CTGTGACAGTGTCCAGGACAGGATTGGAGGGGGTTTGTTTGATCTTTACC  1044
      ||||||||||||| ||| || ||||||| |||| ||| |||||  | |||
seq2  CTGTGACAGTGTCAAGG-CA-GATTGGAAGGGGGTTGGTTGATACTCACC  1046

seq1  TCCACTACTCTGGAC  1059
      | |||||||||||||
seq2  T-CACTACTCTGGAC  1060