BAC Information

Click to search

BAC

Clone NameB6Ng01-068L18
Chromosome11 (Build37)2 (Build37)
Map Location 21,627,634 - 21,628,79887,178,091 - 87,178,132
singlet/doubletsingletsinglet
Overlap geneAV249152
Upstream geneAftph, 1110067D22Rik, LOC100042035, Peli1, Vps54, Ugp2, LOC100042081, 4932414J04Rik, Mdh1, Pgam1-ps1
Downstream geneLOC382494, LOC666047, Otx1, Ehbp1, LOC100042146, Tmem17, LOC100042827
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068L18.bB6Ng01-068L18.g
ACCDH887234DH887235
length1,164819
definitionDH887234|Mus musculus domesticus DNA, BAC clone: B6Ng01-068L18, 5' end.DH887235|Mus musculus domesticus DNA, BAC clone: B6Ng01-068L18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(21,627,634 - 21,628,798)(87,178,091 - 87,178,132)
sequence
gaattctttggaactggaattatcagtaggtgctaggcatggaacctggg
ccttctgtaaaaacacccaagtactcttaagcagcaagccatgtctgttt
agttgtgtgtctgctttcatttggacactgtcattttcaaacatcacact
gagcggatgagcagcacgggtgggcaggaatctcaggcttcactccagta
gcactgctaaggttttataaaacaaataatcgtatttttgtgcatatgct
tctgtctgcatgtatgctgtgcccatggaggccagaagaaggcatcagat
cccatgggttaaaggtggccatgggccacctgacgtgggtgctgagacct
gtatgttcttcacccctgtgctgtctgccctgccccatatgctgtctgtc
ctgccccgtgtgctgtctgtcctggcccgtgtgctgtttttgtttgttgt
tgccactgctttgaaaaataccaaaagaggaacaaaaggaaataagattt
atttagattcaaaatgcatggttggctctttcttcttccttaactttctt
gcccgggtgctgcctccaccaccagaaagatgcccacattctactacaaa
cgtaaacagcaaggttggcagaatagacccgggccatccagctctaacac
cacattatacctgggatcacacatctacacacatatctcttcctagttac
atcaatttattttaatttttcatgtggaatggtaaaggaaaacaaacata
ttcttacaatcctctacaaaacgtcacaaatattatatctctattttcta
ggcaataaagtcctctctttcaaaacttagcctactatttacaagcattt
caaaggcacctgcctttatgctgccacacattaataccaccatatcagga
acagtggctttgtatttgaagagaaatcatcacttctctaaatcattttg
ctttcacactaatgaactagcttcgtgtggcaaacgcacaggtgcaacac
tcgctttcatcagcactccttgctcctctccaggttctacttggttatga
tgaaagctctgtttggtaatgcctccctgctaatgctctcggagaactgt
tcatctccacagaaggtgaaaggtgataactactctctagcataattcag
gcaaagctcgcgtt
gaattcctgatctctctaatacttttaacacgagtgggtgttgtattttg
tcaaatcctttttctgcatctaaggagttgatcatgtgattttttttctt
tgagtttgtttatatagtggattacgttaatggattttcatatattaaac
caaccttgctttgatgaagcttagttgattatggtgaatgatagttttaa
tgtgttcttcgattccatttgcaagaattttatggagtatatttgcattg
atattcataagccagattggtctgaagttctcttttttggttaggtcctt
gtgtggtttaggtatcagagtaattgtgacttcatagaatgagttaggta
gtgttccttctgtttctattttatggaatagtttgaggaaagttggtatt
aggtcttctctgaaggtctggtagaattctgcacttattctacctgaccc
tgggctttttctggttgggagatttttaatgacttcttctatttccttgt
gtgatatgggcctgtttagatagtttacctgctcttgatttaactttggt
atgtgacatctgtctagaaaaccacccatttcatctagattttccagttt
tgttgagtatagacttttataataggatctgatgattttttttttcgtca
cagctccaaattttgtctctgtaactccttctatgggtgttttgttccca
tttctaagaaagggtaaagtgtccacactttggtcttcgttcttcttgaa
tttcatgcgtttggcaagttgtatcttatatcttgggtatcctaagtttc
tgggctaatatccacttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_21627634_21628798
seq2: B6Ng01-068L18.b_48_1211 (reverse)

seq1  AACGC-AGCTTTGCCTGAATTATGCTTAGAAAGTAGTTATCACCTTTCAC  49
      ||||| ||||||||||||||||||| |||| |||||||||||||||||||
seq2  AACGCGAGCTTTGCCTGAATTATGC-TAGAGAGTAGTTATCACCTTTCAC  49

seq1  C-TCTGT-GAGATTGAACAG-TCTCC-AGAGCACTTAGCAGGGAGCCATT  95
      | ||||| |||| ||||||| ||||| |||||| ||||||||||| ||||
seq2  CTTCTGTGGAGA-TGAACAGTTCTCCGAGAGCA-TTAGCAGGGAGGCATT  97

seq1  ACCAAACAAGAGCTTTTCATCATAACCAAGTAGAACCTGGGAGAGGAGCA  145
      ||||||| ||||| |||||||||||||||||||||||| |||||||||||
seq2  ACCAAAC-AGAGC-TTTCATCATAACCAAGTAGAACCT-GGAGAGGAGCA  144

seq1  AGGGAGTGCTGATGAAAGCGAGTGTTGCACCTGTGCGTGTGCCACACGAA  195
      | |||||||||||||||||||||||||||||||||||| |||||||||||
seq2  A-GGAGTGCTGATGAAAGCGAGTGTTGCACCTGTGCGTTTGCCACACGAA  193

seq1  GCTAGTTCATTAGTGTGGAAGCAGAATGATTTAGAGAAGTGATGATTTTC  245
      ||||||||||||||||| ||||| ||||||||||||||||||||| ||||
seq2  GCTAGTTCATTAGTGTGAAAGCAAAATGATTTAGAGAAGTGATGA-TTTC  242

seq1  TCTTCAAATACAAGGCCACTGTT-CTGATATGGTGGTATTAATGTGTGGC  294
      ||||||||||||| ||||||||| ||||||||||||||||||||||||||
seq2  TCTTCAAATACAAAGCCACTGTTCCTGATATGGTGGTATTAATGTGTGGC  292

seq1  AGCATAAAGGCAGGTGCCTTTGAAATGCTTGTAAATAGTAGGCTAAGTTT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAAAGGCAGGTGCCTTTGAAATGCTTGTAAATAGTAGGCTAAGTTT  342

seq1  TGAAAGAGAGGACTTTATTGCCTAG-AAATAGAGATATAATATTTGTGAC  393
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TGAAAGAGAGGACTTTATTGCCTAGAAAATAGAGATATAATATTTGTGAC  392

seq1  GTTTTGTAGAGGATTGTAAGAATATGTTTGTTTTCCTTTACCATTCCACA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTAGAGGATTGTAAGAATATGTTTGTTTTCCTTTACCATTCCACA  442

seq1  TGAAAAATTAAAATAAATTGATGTAACTAGGAAGAGATATGTGTGTAGAT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAATTAAAATAAATTGATGTAACTAGGAAGAGATATGTGTGTAGAT  492

seq1  GTGTGATCCCAGGTATAATGTGGTGTTAGAGCTGGATGGCCCGGGTCTAT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGATCCCAGGTATAATGTGGTGTTAGAGCTGGATGGCCCGGGTCTAT  542

seq1  TCTGCCAACCTTGCTGTTTACGTTTGTAGTAGAATGTGGGCATCTTTCTG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCAACCTTGCTGTTTACGTTTGTAGTAGAATGTGGGCATCTTTCTG  592

seq1  GTGGTGGAGGCAGCACCCGGGCAAGAAAGTTAAGGAAGAAGAAAGAGCCA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGGAGGCAGCACCCGGGCAAGAAAGTTAAGGAAGAAGAAAGAGCCA  642

seq1  ACCATGCATTTTGAATCTAAATAAATCTTATTTCCTTTTGTTCCTCTTTT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGCATTTTGAATCTAAATAAATCTTATTTCCTTTTGTTCCTCTTTT  692

seq1  GGTATTTTTCAAAGCAGTGGCAACAACAAACAAAAACAGCACACGGGCCA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTTTTCAAAGCAGTGGCAACAACAAACAAAAACAGCACACGGGCCA  742

seq1  GGACAGACAGCACACGGGGCAGGACAGACAGCATATGGGGCAGGGCAGAC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGACAGCACACGGGGCAGGACAGACAGCATATGGGGCAGGGCAGAC  792

seq1  AGCACAGGGGTGAAGAACATACAGGTCTCAGCACCCACGTCAGGTGGCCC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGGGGTGAAGAACATACAGGTCTCAGCACCCACGTCAGGTGGCCC  842

seq1  ATGGCCACCTTTAACCCATGGGATCTGATGCCTTCTTCTGGCCTCCATGG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCACCTTTAACCCATGGGATCTGATGCCTTCTTCTGGCCTCCATGG  892

seq1  GCACAGCATACATGCAGACAGAAGCATATGCACAAAAATACGATTATTTG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGCATACATGCAGACAGAAGCATATGCACAAAAATACGATTATTTG  942

seq1  TTTTATAAAACCTTAGCAGTGCTACTGGAGTGAAGCCTGAGATTCCTGCC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATAAAACCTTAGCAGTGCTACTGGAGTGAAGCCTGAGATTCCTGCC  992

seq1  CACCCGTGCTGCTCATCCGCTCAGTGTGATGTTTGAAAATGACAGTGTCC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCGTGCTGCTCATCCGCTCAGTGTGATGTTTGAAAATGACAGTGTCC  1042

seq1  AAATGAAAGCAGACACACAACTAAACAGACATGGCTTGCTGCTTAAGAGT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAAGCAGACACACAACTAAACAGACATGGCTTGCTGCTTAAGAGT  1092

seq1  ACTTGGGTGTTTTTACAGAAGGCCCAGGTTCCATGCCTAGCACCTACTGA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGGTGTTTTTACAGAAGGCCCAGGTTCCATGCCTAGCACCTACTGA  1142

seq1  TAATTCCAGTTCCAAAGAATTC  1165
      ||||||||||||||||||||||
seq2  TAATTCCAGTTCCAAAGAATTC  1164

seq1: chr2_87178091_87178132
seq2: B6Ng01-068L18.g_843_885 (reverse)

seq1  ATAAGTGGATATTAGCCC-CAAACCTAGGATACCCAAGATATA  42
      ||||||||||||||||||  |||| ||||||||||||||||||
seq2  ATAAGTGGATATTAGCCCAGAAACTTAGGATACCCAAGATATA  43