BAC Information

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BAC

Clone NameB6Ng01-069C13
Chromosome11 (Build37)
Map Location 70,157,563 - 70,334,795
singlet/doubletdoublet
Overlap geneAlox15, LOC668466, Pelp1, Arrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik
Upstream geneChd3, Cyb5d1, Lsmd1, Tmem88, Jmjd3, Dnahc2, Efnb3, Wdr79, LOC100043030, Trp53, Atp1b2, Shbg, Sat2, LOC382532, Fxr2, Sox15, Mpdu1, Cd68, Eif4a1, Senp3, Tnfsf12-tnfsf13, Tnfsf13, Tnfsf12, LOC100041994, Polr2a, Amac1, Zbtb4, Chrnb1, Fgf11, Tmem102, 4933402P03Rik, 1700095G12Rik, Nlgn2, 1810027O10Rik, Plscr3, Tnk1, LOC432576, Kctd11, Centb1, 2810408A11Rik, 0610025P10Rik, Gps2, Eif5a, Ybx2, Slc2a4, LOC668442, Cldn7, Rai12, Dullard, Gabarap, Phf23, Dvl2, Acadvl, Dlg4, Asgr1, Asgr2, Mgl2, Mgl1, Slc16a11, Slc16a13, Bcl6b, 0610010K14Rik, D11Bwg0434e, Alox12, Alox12e
Downstream genePsmb6, Pld2, Mink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2, AI842396, Kif1c, LOC668488, Zfp3, A430084P05Rik, Rabep1, LOC668461, Nup88, Rpain, C1qbp, Dhx33, Derl2, Mis12, 6330403K07Rik, LOC382536, Nlrp1a, Nlrp1b, Nlrp1c, LOC100043249, 9230020A06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-069C13.bB6Ng01-069C13.g
ACCDH887546DH887547
length1,0311,008
definitionDH887546|Mus musculus domesticus DNA, BAC clone: B6Ng01-069C13, 5' end.DH887547|Mus musculus domesticus DNA, BAC clone: B6Ng01-069C13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,157,563 - 70,158,597)(70,333,774 - 70,334,795)
sequence
gaattccaatatcttggcaattgttatagttacacttttcccccccaaat
cctgcccaggtagagagagagaatatctggatgctctataatctttgcaa
cattttatttaaaataattaggtccctgttcttttctatcactagcccaa
aacatcttttattgttgctattagactctattaaggcttgagatctattt
gattcatagacgatgtgtaacaatgtatattatcacccttttgtgttccc
ggggtgcttttcccaagcatggctattatttaccctatggggaaggaaaa
gcagaaaggatgaatgaaaagtggcactctgggtaacgcatccaaagcaa
aatgtgttcactacagcagactatggaaagcgggctcttggaaaagggtt
ccacactggcagagggcggggctcaagcacagggatgcacttgagtggtc
ttgattaaataacaaatcgagaggggggatggtcatatggccacgctgtt
ttctaccaggctgggccgcaggtactcataaggtatgtccaagctcttgt
tacgaatctcaatttccttatccaaggcagccagctcctctctgaacttc
ttcagcacagctttggcctcagggtttgggaagtgttcctctgaatgctg
gcccaggggcacctggaaggcaggtgggaaaacagcctaagcctgtgacc
tccgccagttttggggtgcagagtttcctctggaccctgaatgattgatt
gactctcaccataacagcctggcgtctgcccaggagccaaacgacattta
tctggagagtagactgattaggattgggcagcgtcgccatcagcttctcc
atcgtcgcgtccttggttttaggtggtggcagccgcatgggtgcagggtg
cattaggacccagtagacccatccagctggagagacagtgatctagggtc
aagctcgccctggcccccatgctcacattcccctcccccactgtaccccc
caaattcccagctgcctccctctgggagtac
gaattccttactgagctaacgtgactatgaaagtactattttagaagaaa
gcattagaaacagtctgaagctgataggtgtgctatgcctagttgacatc
caaatggaaatgccaaatatccagctggatggatagaaatatatagttca
gaaaaaaagtagatttgaggtacgtttgggagttagtctaagttagtcta
ggaaatgctttatgtctttcacattcactagtacggaagtgaccaaggag
acctttgtggagtgcctgtttggtgagaggcatggtgcacgggctttagg
ttggagacagaacacagaaataaatgtacttttggtggagggaagtagca
ctcaggcgggacatgctgcgttggctgtgtggagggcagatctggactga
gacttggtaagcgctggcaactgaagccatggagcagctgaaatgagctc
aggggaatatgagtccttcagatgcaaagagcagggataacaggtcttcc
cacaccctcccccagcccttaagctagctctccagttatcatacataacg
ccggatgtcgacagctactaaagcattctttattcttcattgcttcttcc
agcttccagaggctgaagatgagaggatctcacacatcactgagactgcc
ctgctgggggtgggccttaactgtggtgacttcactaaagaggaccgcta
gctactctcaggccgccggtaaccctgagtatgtacatcccttcccagaa
atgcctttctggtcggtctcttgatgccgcggccatcaagccagctggag
cagccgtgccggccagcaggccctgggtacgattgtacacatcctccagg
acgccggcggcccgggccagagcaacccgcgcgtccgcctctcctgttcc
gggacacgccagctggagcagcgaccgcgactcgggaggccagatcgcca
gcgagcgcctgacgatagcatgatggtgcgggctaggcggtgctgtagct
tccccgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_70157563_70158597
seq2: B6Ng01-069C13.b_43_1073

seq1  GAATTCCAATATCTTGGCAATTGTTATAGTTACACTTTTCCCCCCCAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATATCTTGGCAATTGTTATAGTTACACTTTTCCCCCCCAAAT  50

seq1  CCTGCCCAGGTAGAGAGAGAGAATATCTGGATGCTCTATAATCTTTGCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCCAGGTAGAGAGAGAGAATATCTGGATGCTCTATAATCTTTGCAA  100

seq1  CATTTTATTTAAAATAATTAGGTCCCTGTTCTTTTCTATCACTAGCCCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTATTTAAAATAATTAGGTCCCTGTTCTTTTCTATCACTAGCCCAA  150

seq1  AACATCTTTTATTGTTGCTATTAGACTCTATTAAGGCTTGAGATCTATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCTTTTATTGTTGCTATTAGACTCTATTAAGGCTTGAGATCTATTT  200

seq1  GATTCATAGACGATGTGTAACAATGTATATTATCACCCTTTTGTGTTCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCATAGACGATGTGTAACAATGTATATTATCACCCTTTTGTGTTCCC  250

seq1  GGGGTGCTTTTCCCAAGCATGGCTATTATTTACCCTATGGGGAAGGAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGCTTTTCCCAAGCATGGCTATTATTTACCCTATGGGGAAGGAAAA  300

seq1  GCAGAAAGGATGAATGAAAAGTGGCACTCTGGGTAACGCATCCAAAGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAAGGATGAATGAAAAGTGGCACTCTGGGTAACGCATCCAAAGCAA  350

seq1  AATGTGTTCACTACAGCAGACTATGGAAAGCGGGCTCTTGGAAAAGGGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTTCACTACAGCAGACTATGGAAAGCGGGCTCTTGGAAAAGGGTT  400

seq1  CCACACTGGCAGAGGGCGGGGCTCAAGCACAGGGATGCACTTGAGTGGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACTGGCAGAGGGCGGGGCTCAAGCACAGGGATGCACTTGAGTGGTC  450

seq1  TTGATTAAATAACAAATCGAGAGGGGGGATGGTCATATGGCCACGCTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTAAATAACAAATCGAGAGGGGGGATGGTCATATGGCCACGCTGTT  500

seq1  TTCTACCAGGCTGGGCCGCAGGTACTCATAAGGTATGTCCAAGCTCTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACCAGGCTGGGCCGCAGGTACTCATAAGGTATGTCCAAGCTCTTGT  550

seq1  TACGAATCTCAATTTCCTTATCCAAGGCAGCCAGCTCCTCTCTGAACTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGAATCTCAATTTCCTTATCCAAGGCAGCCAGCTCCTCTCTGAACTTC  600

seq1  TTCAGCACAGCTTTGGCCTCAGGGTTTGGGAAGTGTTCCTCTGAATGCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCACAGCTTTGGCCTCAGGGTTTGGGAAGTGTTCCTCTGAATGCTG  650

seq1  GCCCAGGGGCACCTGGAAGGCAGGTGGGAAAACAGCCTAAGCCTGTGACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGGGGCACCTGGAAGGCAGGTGGGAAAACAGCCTAAGCCTGTGACC  700

seq1  TCCGCCAGTTTTGGGGTGCAGAGTTTCCTCTGGACCCTGAATGATTGATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGCCAGTTTTGGGGTGCAGAGTTTCCTCTGGACCCTGAATGATTGATT  750

seq1  GACTCTCACCATAACAGCCTGGCGTCTGCCCAGGAGCCAAACGACATTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTCACCATAACAGCCTGGCGTCTGCCCAGGAGCCAAACGACATTTA  800

seq1  TCTGGAGAGTAGACTGATTAGGATTGGGCAGCGTCGCCATCAGCTTCTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGAGTAGACTGATTAGGATTGGGCAGCGTCGCCATCAGCTTCTCC  850

seq1  ATCGTCGCGTCCTTGGTTTTAGGTGGTGGCAGCCGCAT-GGTGCAGGGTG  899
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATCGTCGCGTCCTTGGTTTTAGGTGGTGGCAGCCGCATGGGTGCAGGGTG  900

seq1  CATTAGGAACCCAGTAGAACCAATCCAGCTGGAGAGACAGTGATCTAGGG  949
      ||||||| ||||||||| ||| ||||||||||||||||||||||||||||
seq2  CATTAGG-ACCCAGTAG-ACCCATCCAGCTGGAGAGACAGTGATCTAGGG  948

seq1  TCAAGGCTCGCCCTTGGCCCCCATGCTCACATTCCCCTCCCCCACTGTAC  999
      |||| |||||||| ||||||||||||||||||||||||||||||||||||
seq2  TCAA-GCTCGCCC-TGGCCCCCATGCTCACATTCCCCTCCCCCACTGTAC  996

seq1  TCCCCAAATTCCCAGCTGCCTCCCTCTGGGAAGTAC  1035
       ||||||||||||||||||||||||||||| |||||
seq2  CCCCCAAATTCCCAGCTGCCTCCCTCTGGG-AGTAC  1031

seq1: chr11_70333774_70334795
seq2: B6Ng01-069C13.g_69_1076 (reverse)

seq1  TGCGGGGAAGCCTACAGCACCGCCCTGGCCCCGCACCATCCATGGCTTAT  50
      |||||||||| |||||||||||||  |  |||||||||| ||||   |||
seq2  TGCGGGGAAG-CTACAGCACCGCCTAG--CCCGCACCAT-CATG--CTAT  44

seq1  CCGTCAGGCCGCTCGCCTGGCGATCTTGGCCCTCCCGAGTCGCGGTCGCC  100
       ||||||| |||||| ||||||||||  | |||||||||||||||||| |
seq2  -CGTCAGG-CGCTCG-CTGGCGATCT--GGCCTCCCGAGTCGCGGTCG-C  88

seq1  TGCTCCAGCTGGCGTGTCCCGGAACAGGAGAGGCGGACGCGCGGGTTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCAGCTGGCGTGTCCCGGAACAGGAGAGGCGGACGCGCGGGTTGCT  138

seq1  CTGGCCCGGGCCGCCGGCGTCCTGGAGGATGTGTACAATCGTACCCAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCCGGGCCGCCGGCGTCCTGGAGGATGTGTACAATCGTACCCAGGG  188

seq1  CCTGCTGGCCGGCCACGGCCTGCTCCAGCTGGCTTGATGGCCGCGGCATC  250
      |||||||||||| ||||| |||||||||||||||||||||||||||||||
seq2  CCTGCTGGCCGG-CACGG-CTGCTCCAGCTGGCTTGATGGCCGCGGCATC  236

seq1  AAGAGACCGACCAGAAAGGCATTTCTGGGAAGGGATGTACATACTCAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGACCGACCAGAAAGGCATTTCTGGGAAGGGATGTACATACTCAGGG  286

seq1  TTACCGGCGGCCTGAGAGTAGCTAGCGGTCCTCTTTAGTGAAGTCACCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCGGCGGCCTGAGAGTAGCTAGCGGTCCTCTTTAGTGAAGTCACCAC  336

seq1  AGTTAAGGCCCACCCCCAGCAGGGCAGTCTCAGTGATGTGTGAGATCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAGGCCCACCCCCAGCAGGGCAGTCTCAGTGATGTGTGAGATCCTC  386

seq1  TCATCTTCAGCCTCTGGAAGCTGGAAGAAGCAATGAAGAATAAAGAATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTCAGCCTCTGGAAGCTGGAAGAAGCAATGAAGAATAAAGAATGC  436

seq1  TTTAGTAGCTGTCGACATCCGGCGTTATGTATGATAACTGGAGAGCTAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTAGCTGTCGACATCCGGCGTTATGTATGATAACTGGAGAGCTAGC  486

seq1  TTAAGGGCTGGGGGAGGGTGTGGGAAGACCTGTTATCCCTGCTCTTTGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGGCTGGGGGAGGGTGTGGGAAGACCTGTTATCCCTGCTCTTTGCA  536

seq1  TCTGAAGGACTCATATTCCCCTGAGCTCATTTCAGCTGCTCCATGGCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGGACTCATATTCCCCTGAGCTCATTTCAGCTGCTCCATGGCTTC  586

seq1  AGTTGCCAGCGCTTACCAAGTCTCAGTCCAGATCTGCCCTCCACACAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCCAGCGCTTACCAAGTCTCAGTCCAGATCTGCCCTCCACACAGCC  636

seq1  AACGCAGCATGTCCCGCCTGAGTGCTACTTCCCTCCACCAAAAGTACATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCAGCATGTCCCGCCTGAGTGCTACTTCCCTCCACCAAAAGTACATT  686

seq1  TATTTCTGTGTTCTGTCTCCAACCTAAAGCCCGTGCACCATGCCTCTCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTGTGTTCTGTCTCCAACCTAAAGCCCGTGCACCATGCCTCTCAC  736

seq1  CAAACAGGCACTCCACAAAGGTCTCCTTGGTCACTTCCGTACTAGTGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAGGCACTCCACAAAGGTCTCCTTGGTCACTTCCGTACTAGTGAAT  786

seq1  GTGAAAGACATAAAGCATTTCCTAGACTAACTTAGACTAACTCCCAAACG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAGACATAAAGCATTTCCTAGACTAACTTAGACTAACTCCCAAACG  836

seq1  TACCTCAAATCTACTTTTTTTCTGAACTATATATTTCTATCCATCCAGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCAAATCTACTTTTTTTCTGAACTATATATTTCTATCCATCCAGCT  886

seq1  GGATATTTGGCATTTCCATTTGGATGTCAACTAGGCATAGCACACCTATC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATTTGGCATTTCCATTTGGATGTCAACTAGGCATAGCACACCTATC  936

seq1  AGCTTCAGACTGTTTCTAATGCTTTCTTCTAAAATAGTACTTTCATAGTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCAGACTGTTTCTAATGCTTTCTTCTAAAATAGTACTTTCATAGTC  986

seq1  ACGTTAGCTCAGTAAGGAATTC  1022
      ||||||||||||||||||||||
seq2  ACGTTAGCTCAGTAAGGAATTC  1008