BAC Information

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BAC

Clone NameB6Ng01-069K03
Chromosome11 (Build37)
Map Location 118,938,075 - 119,082,260
singlet/doubletdoublet
Overlap geneCbx4, Tbc1d16
Upstream geneDnahc17, Pscd1, Usp36, Timp2, Ddc8, Lgals3bp, Cant1, C1qtnf1, D230014K01Rik, D11Bwg0517e, Enpp7, Cbx2, Cbx8
Downstream geneCcdc40, Gaa, Eif4a3, Card14, Sgsh, Slc26a11, LOC672511, Rnf213, A730011L01Rik, Nptx1, 4932417H02Rik, Chmp6, Baiap2, Aatk, Azi1, 2410002I01Rik, 1810043H04Rik, 1810073N04Rik, 2810410L24Rik, LOC100042332, LOC100043384
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-069K03.bB6Ng01-069K03.g
ACCDH887883DH887884
length1,078720
definitionDH887883|Mus musculus domesticus DNA, BAC clone: B6Ng01-069K03, 5' end.DH887884|Mus musculus domesticus DNA, BAC clone: B6Ng01-069K03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,938,075 - 118,939,187)(119,081,596 - 119,082,260)
sequence
gaattccactccccccggcccatctcacgcaagggccccgtgccgccagc
cacctttcgtgccacgcgactcgaagccatttctgtaactacctttactg
ggctggtggtttacaggccctctctgattctctattgagatgtctccgta
aggacaaacagggtgacctcttgggactaaaataatttccctaccagatc
taaggaacccgtctaaatttcattttcccttaaaattatgccaaatttgc
ctttgctttataagtttgtctcagatgttccctgggacatactgatatgc
taaatatcattcattctagggctgaggatgtagagtaccgtctagtatgc
aagaagccccaggtttggttcctagcactgcctaaaaccagccatgatgg
ggcatgcctgtgatctctccttttatgaggtagaaggagaggaacagaat
ttcagagtcttccccatcctctgccatatatacatatacatatacatcat
atacatatacgtctgccacatatatatacatatacatatacctatacaca
tacatatacgtctgccatgtatacgcttacacacatatataatacacata
tgaaatgtatgtattattgcacttggaagtaccgactgctcttttagacg
accggggttggatcccatcacccacatggcatcttgccaccacctataac
tgcaattctgatatcctcttctgatctctacatgcaccaggtccaaaagt
gatgtgcatatatgcatacaagcaaaacactcatacacataaaagaaaca
gaaatcatctttaaatatttatttatttatgaacatttacatgcttatgc
tattgattgattatctgcatacgctatccaaattgagctaagaaccctaa
atcttatttgttggctgacactctagaccacccatgctgcatctgtggga
ctctcaccaaatacaccaactgtggtgtcacgatgagtaaaactgtggat
aacctgaacttctggaactaagtgaacagcaggcagactatgtcgaccga
aggagtcagcaggtctgggcaggaggct
gaattccttgtctataccttccctggctgggattacaggaagagcactat
acccacctatctataccttccctggctgggattaatggtggagcactacc
cccacctatctataccttccctggctgggattaccggaggagcactatac
ccacctagaatttatgcggttttagggatccaagttctggttctcatact
aaaaaatcgagcattaaccacagagccatctccctatctcccccaatatt
tgtgtgtgtgtgtgtacatgtacagggtgtttgtcttgttgaaaaaaaag
aaaaatctccaatctttcccgtggttgctctacaattttaaggcggggtc
tctcatttgaacccagagcacacaatttagacgactctggctagatgcct
gctaggttgagaaggatcccatctcagactccagtgtgaccggatgaccg
gtgggcccccgatctcacctgctttaatgtgattgattcgatctgagttc
tctccttcacgctccttagagagccctttacctaccaaaccaagcttcct
tgtgtcaggttgcatttttccttaaatggtgccccgcccccactcctgta
ccttttatctcttacgcggccatcagcatctttattccccaccgacgccc
cctgagagctgccgcagcaaggagcctaactgtctctgtgggggacttac
gcacgtatttgggagctgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_118938075_118939187
seq2: B6Ng01-069K03.b_39_1116

seq1  GAATTCCCACTCCACCCCCAGCCCAATCTCAGGCAAGGGCCCCGTGCCAC  50
      ||||| ||||||  ||||| |||| |||||| ||||||||||||||||  
seq2  GAATT-CCACTC--CCCCCGGCCC-ATCTCACGCAAGGGCCCCGTGCC-G  45

seq1  CCAGCCACCTTTCCATGCCACGCGACTCGAAGCCATTTCTGTAACTACCT  100
      |||||||||||| | |||||||||||||||||||||||||||||||||||
seq2  CCAGCCACCTTT-CGTGCCACGCGACTCGAAGCCATTTCTGTAACTACCT  94

seq1  TTACAGGGCTGGTGGTTTACAGGCCCTCTCTGATTCTCTATTGAGATGTC  150
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGGGCTGGTGGTTTACAGGCCCTCTCTGATTCTCTATTGAGATGTC  144

seq1  TCCGTAGGGACAGACAGGGTGACAGTTTGGGACTAAAATAGTTTCCAGAC  200
      |||||| ||||| ||||||||||   |||||||||||||| |||||  ||
seq2  TCCGTAAGGACAAACAGGGTGACCTCTTGGGACTAAAATAATTTCCCTAC  194

seq1  CAAATCTAGGGTACCCAGCTAAATTTCATTTTCACTTAAAATAGTGCCAA  250
      || ||||| || ||||  ||||||||||||||| ||||||||  ||||||
seq2  CAGATCTAAGGAACCCGTCTAAATTTCATTTTCCCTTAAAATTATGCCAA  244

seq1  ATTTGCCTTTGCTTTAGAAGTTTGTCTCAAATGTTCCCTGGGACATACGT  300
      |||||||||||||||| |||||||||||| ||||||||||||||||||  
seq2  ATTTGCCTTTGCTTTATAAGTTTGTCTCAGATGTTCCCTGGGACATACTG  294

seq1  ATATGCTAAATATGATTCATTCTAGGGCTGAGGATGTAGAGTACAGTCTA  350
      ||||||||||||| |||||||||||||||||||||||||||||| |||||
seq2  ATATGCTAAATATCATTCATTCTAGGGCTGAGGATGTAGAGTACCGTCTA  344

seq1  GTATGCAAGAAGCCCCAGGTTTGGTTCCTAGCACTGCCTAAAACCAGCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCAAGAAGCCCCAGGTTTGGTTCCTAGCACTGCCTAAAACCAGCCA  394

seq1  TGATGGGGCATGCCTGTGATCTCAGCTTTTATGAGGTAGAAGGAGAGGAA  450
      |||||||||||||||||||||||  |||||||||||||||||||||||||
seq2  TGATGGGGCATGCCTGTGATCTCTCCTTTTATGAGGTAGAAGGAGAGGAA  444

seq1  CAGAATTTCAGAGTCATCCCCATCCTCTGCCATATATACATATACATATA  500
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CAGAATTTCAGAGTCTTCCCCATCCTCTGCCATATATACATATACATATA  494

seq1  CATCATATACATATACGTCTGCCACATATATATACATATACGTATACGTA  550
      ||||||||||||||||||||||||||||||||||||||||| ||||| ||
seq2  CATCATATACATATACGTCTGCCACATATATATACATATACATATACCTA  544

seq1  TACACATACATATACGTCTGCCATGTATACACATACACACATATATAATA  600
      |||||||||||||||||||||||||||||| | |||||||||||||||||
seq2  TACACATACATATACGTCTGCCATGTATACGCTTACACACATATATAATA  594

seq1  CACATATGAAATGTATGTATTATTGCACTTGTAAGTACCAACTGCTCTTT  650
      ||||||||||||||||||||||||||||||| ||||||| ||||||||||
seq2  CACATATGAAATGTATGTATTATTGCACTTGGAAGTACCGACTGCTCTTT  644

seq1  TAGAGGACCAGGTTTGGATCCCAGCACCCACATGGCAGCTTGCAACCACC  700
      |||| |||| || |||||||||| ||||||||||||| ||||| ||||||
seq2  TAGACGACCGGGGTTGGATCCCATCACCCACATGGCATCTTGCCACCACC  694

seq1  TATAACTTCAATTCTTATATCCTCTTCTGATCTCTACAGGCACCAGGTCC  750
      ||||||| ||||||| |||||||||||||||||||||| |||||||||||
seq2  TATAACTGCAATTCTGATATCCTCTTCTGATCTCTACATGCACCAGGTCC  744

seq1  AAAAGTGATGTGCATATATGCATACAGGCAAAACACTCATACACATAAAA  800
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AAAAGTGATGTGCATATATGCATACAAGCAAAACACTCATACACATAAAA  794

seq1  GAAAAAGAAATCAACCTTTAAATATTTATTTATTTATAAGCATTTACATG  850
      |||| ||||||| | |||||||||||||||||||||| | ||||||||||
seq2  GAAACAGAAATC-ATCTTTAAATATTTATTTATTTATGAACATTTACATG  843

seq1  CATATGCTAGTGATTGATTTATATGCATACGCTATCCAAATTGAGCTAAG  900
      | ||||||| ||||||| |||| |||||||||||||||||||||||||||
seq2  CTTATGCTATTGATTGA-TTATCTGCATACGCTATCCAAATTGAGCTAAG  892

seq1  AACCCTAAATTCTTATTTGTTTGGCCTGACAACTCTAGACCCACACCATG  950
      ||||||||| |||||||||||  | ||||| |||||||| |||| |||||
seq2  AACCCTAAA-TCTTATTTGTT--GGCTGAC-ACTCTAGA-CCAC-CCATG  936

seq1  CTGCATCTGTGGGACATCTCCAACAAATGACACCAACTGTGGTGTCCAAG  1000
      ||||||||||||||| ||| || ||||| |||||||||||||||||  | 
seq2  CTGCATCTGTGGGAC-TCT-CACCAAAT-ACACCAACTGTGGTGTC--AC  981

seq1  GATGGAGTAAAGACTGTGGGATAAACTTGGATCTTCTGGAACTAAGCTGA  1050
      ||| ||||||| ||||| |||||| ||  || |||||||||||||| |||
seq2  GAT-GAGTAAA-ACTGT-GGATAACCT--GAACTTCTGGAACTAAG-TGA  1025

seq1  GACAGTCAGGGCAGACTACTGGTCGACCAGAGCTGTAGTCAAGCCAGCTC  1100
       |||| || |||||||||   |||||||   |  | |||||   ||| ||
seq2  -ACAG-CA-GGCAGACTA--TGTCGACC---GAAGGAGTCA--GCAGGTC  1065

seq1  TGGGCAGGAGGCT  1113
      |||||||||||||
seq2  TGGGCAGGAGGCT  1078

seq1: chr11_119081596_119082260
seq2: B6Ng01-069K03.g_65_784 (reverse)

seq1  --------------------------------------------------  0
                                                        
seq2  GACAGCTCCCAAATACGTGCGTAAGTCCCCCACAGAGACAGTTAGGCTCC  50

seq1  -------GACAGCTCCCAGGGGGTGTCGGTGGGGGATAAAGACGCTGAAG  43
             | |||||| ||||||| |||||||||| ||||||| ||||| |
seq2  TTGCTGCGGCAGCTCTCAGGGGGCGTCGGTGGGGAATAAAGATGCTGATG  100

seq1  GCCGCCTCAGAGATAAAAGGTACCGGGGTGGGGGCGGGGCACCAGCTAAG  93
      ||||| | ||||||||||||||| || |||||||||||||||||  ||||
seq2  GCCGCGTAAGAGATAAAAGGTACAGGAGTGGGGGCGGGGCACCATTTAAG  150

seq1  GAAAAATGCAAACTGATGAAAGGAAGGTTGGCTTGGTAGGTAAAGGGCTC  143
      ||||||||||| ||||   ||||||| |||| ||||||||||||||||||
seq2  GAAAAATGCAACCTGACACAAGGAAGCTTGGTTTGGTAGGTAAAGGGCTC  200

seq1  TCTAAGGAGCGTGAAGGAGAGAACTCAGATCCTAGCACTCATGTTAAAGC  193
      |||||||||||||||||||||||||||||||  | || |||  |||||||
seq2  TCTAAGGAGCGTGAAGGAGAGAACTCAGATCGAATCAATCACATTAAAGC  250

seq1  AGGTGACCGCGGTGGCCTGCCGGTCATCCGGTCACACTGGAGGCTGAGAT  243
      ||||||   ||| ||||  ||||||||||||||||||||||| |||||||
seq2  AGGTGAGATCGGGGGCCCACCGGTCATCCGGTCACACTGGAGTCTGAGAT  300

seq1  GGGATCCTGATCTCCGTAGCAGGCTGTCTAGCTAGAGTCGTCTAATATGT  293
      ||||||||  ||  | ||||||||  |||||| ||||||||||||  |||
seq2  GGGATCCTTCTCAACCTAGCAGGC-ATCTAGCCAGAGTCGTCTAAATTGT  349

seq1  GTGCTCTGGGTTCAAATGAGAGACCCTGCCTTAAAAGTGGAGAGCAACCA  343
      |||||||||||||||||||||||||| ||||||||| || ||||||||||
seq2  GTGCTCTGGGTTCAAATGAGAGACCCCGCCTTAAAATTGTAGAGCAACCA  399

seq1  AGGAAAAGACTGGATGTCTGTCTCTGGTCTCAACAAGACAAACACCCTGT  393
       || ||||| ||||  | | ||| |  | |||||||||||||||||||||
seq2  CGGGAAAGATTGGAGATTTTTCTTTTTTTTCAACAAGACAAACACCCTGT  449

seq1  ACATGTACACACACACACACAAATATTGGGGGAGATAGGGAGATGGCTCT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTACACACACACACACAAATATTGGGGGAGATAGGGAGATGGCTCT  499

seq1  GTGGTTAATGCTCGATTTACAAGTATGAGAACCAGAACTTGGATCCCTAA  493
      ||||||||||||||||||   |||||||||||||||||||||||||||||
seq2  GTGGTTAATGCTCGATTTTTTAGTATGAGAACCAGAACTTGGATCCCTAA  549

seq1  AACCTGCATAAATGCTAGGTGGGTATAGTGCTCCTCCTGTAATCCCAGCC  543
      |||| |||||||| ||||||||||||||||||||||| ||||||||||||
seq2  AACC-GCATAAATTCTAGGTGGGTATAGTGCTCCTCCGGTAATCCCAGCC  598

seq1  AGGGAAGGTATAGATAGGTGGGTGTAGTGCTCCACCCGTAATCCCAGCCA  593
      |||||||||||||||||||||| |||||||||||||  ||||||||||||
seq2  AGGGAAGGTATAGATAGGTGGGGGTAGTGCTCCACCATTAATCCCAGCCA  648

seq1  GGGAAGGTATAGATAGGTGGGTATAGTGCTCCTCCTGTAATCCCAGCCAG  643
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GGGAAGGTATAGATAGGTGGGTATAGTGCTCTTCCTGTAATCCCAGCCAG  698

seq1  GGAAGGTATAGACAAGGAATTC  665
      ||||||||||||||||||||||
seq2  GGAAGGTATAGACAAGGAATTC  720