BAC Information

Click to search

BAC

Clone NameB6Ng01-072J10
Chromosome11 (Build37)10 (Build37)
Map Location 121,066,114 - 121,066,8767,900,023 - 7,900,219
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100043389, Bahcc1, Actg1, Fscn2, 2310003H01Rik, Nploc4, Tspan10, Pde6g, 1810049H13Rik, 3110023B02Rik, 2600005N12Rik, Hgs, Mrpl12, Slc25a10, LOC667716, Gcgr, BC003940, Dysfip1, P4hb, Arhgdia, LOC100042371, Thoc4, Anapc11, Npb, Pcyt2, Sirt7, Mafg, Pycr1, 1110012N22Rik, 5730593N15Rik, Aspscr1, Stra13, Lrrc45, Rac3, Dcxr, Cbr2, Hmga1-rs1, LOC667778, Rfng, Gps1, Dus1l, Fasn, Ccdc57, LOC100043454, Slc16a3, Csnk1d, Cd7, Sectm1b, Sectm1a, LOC637008, 4921530G04Rik, Tex19, Uts2r, 1110031I02Rik
Downstream geneHexdc, BC017643, Narf, Foxk2, Wdr45l, Rab40b, BC032265, Fn3k, Tbcd, Zfp750, B3gntl1, Metrnl, Ptchd3, LOC667879, LOC674842
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072J10.bB6Ng01-072J10.g
ACCDH889966DH889967
length763226
definitionDH889966|Mus musculus domesticus DNA, BAC clone: B6Ng01-072J10, 5' end.DH889967|Mus musculus domesticus DNA, BAC clone: B6Ng01-072J10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(121,066,114 - 121,066,876)(7,900,023 - 7,900,219)
sequence
gaattctgtcttctcctgtagctgggctgcggcggcgacgcgggtgagtc
aagcccacagccaccgattgtgctgggcccggatgacctgtctcctacgg
ccgccgccctctcctttccccggccccgagagctgcattgagaagcctgt
cagggactttgaactgcctgagagtggcaggtcgggcagggttggggatt
gagggcgagcgtagggggggtgtggttcctaaggctaggacttttgagtc
cttgcacaggacgagcaggtgaaatcatgcaactggatgcacaactctgt
aattctttttaataatcgcttgtgattttacagaaggtaggaaaactgtt
tctaatatcttgactgcttcagtgtcctccagaaatgaactgtaatggaa
actatagtcagttctgatatatgtagagtttattcccttttcaggttatt
gttgttgttatttgcagtagccagggtggatcgcagggttcctggcataa
tgagcagccggtgctgtatcacggagctagtcaccatctctccaaattac
cactgccttaattgtttttcagtacgaggaattgaacctaaggccttctg
catgctagacaagtgttgtaccactaagcaatccagtccttattttactt
attagtctggagacagggtcttattaagttgcaaagtctagccttgacct
tcctttatagcccaggcaagtcttaaactttaatcctccttcctcaggag
ggggtggggtggt
aaagagatccacatgcctggctaaattaaaaaaaaaaaaatatatatata
tatatatttaagatttatttattgttatatgtaagtagctgtcttcagac
acaccagaagagggagtcagatctcattatggatggttgtgagccaccat
gtggttgctgggatttgaactcaggacctctggaagagcagtcagtgctc
ttaaccactgcgccatctctccagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_121066114_121066876
seq2: B6Ng01-072J10.b_45_807

seq1  GAATTCTGTCTTCTCCTGTAGCTGGGCTGCGGCGGCGACGCGGGTGAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCTTCTCCTGTAGCTGGGCTGCGGCGGCGACGCGGGTGAGTC  50

seq1  AAGCCCACAGCCACCGATTGTGCTGGGCCCGGATGACCTGTCTCCTACGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCACAGCCACCGATTGTGCTGGGCCCGGATGACCTGTCTCCTACGG  100

seq1  CCGCCGCCCTCTCCTTTCCCCGGCCCCGAGAGCTGCATTGAGAAGCCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCGCCCTCTCCTTTCCCCGGCCCCGAGAGCTGCATTGAGAAGCCTGT  150

seq1  CAGGGACTTTGAACTGCCTGAGAGTGGCAGGTCGGGCAGGGTTGGGGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGACTTTGAACTGCCTGAGAGTGGCAGGTCGGGCAGGGTTGGGGATT  200

seq1  GAGGGCGAGCGTAGGGGGGGTGTGGTTCCTAAGGCTAGGACTTTTGAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCGAGCGTAGGGGGGGTGTGGTTCCTAAGGCTAGGACTTTTGAGTC  250

seq1  CTTGCACAGGACGAGCAGGTGAAATCATGCAACTGGATGCACAACTCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCACAGGACGAGCAGGTGAAATCATGCAACTGGATGCACAACTCTGT  300

seq1  AATTCTTTTTAATAATCGCTTGTGATTTTACAGAAGGTAGGAAAACTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTTTTAATAATCGCTTGTGATTTTACAGAAGGTAGGAAAACTGTT  350

seq1  TCTAATATCTTGACTGCTTCAGTGTCCTCCAGAAATGAACTGTAATGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATATCTTGACTGCTTCAGTGTCCTCCAGAAATGAACTGTAATGGAA  400

seq1  ACTATAGTCAGTTCTGATATATGTAGAGTTTATTCCCTTTTCAGGTTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAGTCAGTTCTGATATATGTAGAGTTTATTCCCTTTTCAGGTTATT  450

seq1  GTTGTTGTTATTTGCAGTAGCCAGGGTGGATCGCAGGGTTCCTGGCATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTGTTATTTGCAGTAGCCAGGGTGGATCGCAGGGTTCCTGGCATAA  500

seq1  TGAGCAGCCGGTGCTGTATCACGGAGCTAGTCACCATCTCTCCAAATTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAGCCGGTGCTGTATCACGGAGCTAGTCACCATCTCTCCAAATTAC  550

seq1  CACTGCCTTAATTGTTTTTCAGTACGAGGAATTGAACCTAAGGCCTTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCCTTAATTGTTTTTCAGTACGAGGAATTGAACCTAAGGCCTTCTG  600

seq1  CATGCTAGACAAGTGTTGTACCACTAAGCAATCCAGTCCTTATTTTACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTAGACAAGTGTTGTACCACTAAGCAATCCAGTCCTTATTTTACTT  650

seq1  ATTAGTCTGGAGACAGGGTCTTATTAAGTTGCAAAGTCTAGCCTTGACCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTCTGGAGACAGGGTCTTATTAAGTTGCAAAGTCTAGCCTTGACCT  700

seq1  TCCTTTATAGCCCAGGCAAGTCTTAAACTTTAATCCTCCTTCCTCAGGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTATAGCCCAGGCAAGTCTTAAACTTTAATCCTCCTTCCTCAGGAG  750

seq1  GGGGTGGGGTGGT  763
      |||||||||||||
seq2  GGGGTGGGGTGGT  763

seq1: chr10_7900023_7900219
seq2: B6Ng01-072J10.g_112_299 (reverse)

seq1  GGCTGGAGAGATGGCTCAGTGGTTAAGAGCACGGACTGCTCTTCCAAAGG  50
      ||||||||||||||| |||||||||||||||| ||||||||||||| |||
seq2  GGCTGGAGAGATGGCGCAGTGGTTAAGAGCACTGACTGCTCTTCCAGAGG  50

seq1  TCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAGCCATCCGTAA  100
      ||||||||||||||||||||||||||||||||||||||| |||||| |||
seq2  TCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCATAA  100

seq1  TGAGATCTGACACCCTCTTCTGGTGCATCTGAAGACAGCTACAGTGTACT  150
      ||||||||||| |||||||||||||  ||||||||||||       ||||
seq2  TGAGATCTGACTCCCTCTTCTGGTGTGTCTGAAGACAGC-------TACT  143

seq1  TAGATATAATAATAAATAAATCTTTTAAAATAT-TATATATATATATT  197
      || |||||| ||||||||||||||   |||||| ||||||||||||||
seq2  TACATATAACAATAAATAAATCTT---AAATATATATATATATATATT  188