BAC Information

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BAC

Clone NameB6Ng01-072M24
Chromosome11 (Build37)
Map Location 27,422,081 - 27,423,106
singlet/doubletsinglet
Overlap geneLOC100042377
Upstream geneVrk2, EG628586, Ppia-ps11_266.1, OTTMUSG00000005300, LOC666270, LOC100042367
Downstream geneEG626571, Ccdc85a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072M24.bB6Ng01-072M24.g
ACCDH890119DH890120
length1,2571,053
definitionDH890119|Mus musculus domesticus DNA, BAC clone: B6Ng01-072M24, 5' end.DH890120|Mus musculus domesticus DNA, BAC clone: B6Ng01-072M24, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttaactctggagcacattgttaaatagtgttatttgatt
ttctggagtccaatttcttgagatttttatatatattggatattatttcc
ctatctgatttaggattggtaaagatcctttcccaatccgttggaatttt
tttcttattgacagcgtcttttcccttacagaagctttgcaattttgtga
ggtcccatttgactattcttgatcttgcagcataagtcgttgaggttctg
ttcaggaattcttcccctgtgcccatatcttcgagacatttcccccacta
tattcctctataagtttcagtgtctctggtttttgtggagttccttgatc
cacttagacatgagctttgtagaaggagataagaatggatcaatttgaat
tcttctacatgataacctccagttgtgccaacaccatttgttgaaaatgc
tgtcttttttctactggattgttttagctccttggtcaaagataaagtgg
ccataggtgtgtgtgttcatttctggacctttaattctattccattgatc
tacctctctttcactctactagtaccatgcagtttttgttgttgtttttt
gtttgtttgtttgttttatcacaattgctctgtagtttagattgaagtca
ggcatggtgattccaccagaggttcttttattgttgagaatagtttttgc
tatcctatttttttgttattccagattaatttacaatttgcactttcttt
ttttttaatatttttattacatattttcctcaattacatttccaatgcta
tcccaaaagtcccccataccctccccccccccacttccctacccacccat
tccaattttttggccctggcgttcccctgtactggggcatatacagtttg
cctgtccaatgggcctctctttcagtgatggccgactaggccatcttttg
ataattatgcagctaagaggacatagaagcctccggggtactagttagtt
cataatggttgttccacctataaggtttgcagattctctttagctcctgg
ggtacttctctagctctcatttggagccctggatacaatcaataactgac
gtggagcatcccctcagtgttggtcaagcctgcaaggctcaaaaagaacg
ctacactggattggaagatctagctagtctaatcgatgtccatagtcaac
cttaaagatcctgtatcaagtgtgagtctctaatcgcagttagcccctct
cgtcagt
gaattcactttactttttttctttcaacgtataaagcacataacaaatgg
ctttttattcatttgttaatacatttcatacattaatttttaaaaatgta
tctacatctttttatttccataaatacaaaaatatttatattatttcctt
tagtcattctttaattctttaaaagtattgcttactcacatgtctggtga
acagccctttggtgtgtacatgtctgaacataaatgatttcctagctgaa
gacatttgcaattaaacatgagaaatgaattagatatataacaaatttaa
taataaggaaaaatgagtactataaatgaagctaatatgttaattatcag
gaatgagaggagtggaggtaaagccagtaaaacaatgtgtatataacctt
tattagcatgcaagttcttcatggattgagtaaactatgactctgaagac
atcagaagagtgtggacaagctattcaatacagtgggaagaaaacaaaca
attatgactgattgtcctgaagttacaggtgagagaccagatcttttggt
ttcagacacaatcttagagaacctgacctaaggttcaacaaacaggtcaa
tacagagcaccagtttccaggtttccctctaacaagacctacgtttagca
ccagtttccaggttatttcccaacaaatctacatcttcaagttacaagaa
tgaccctgatacttcacttcctaccaacccccaatcaagaaaaaacaaaa
caaaacaaaacaaaacaaaacaaaacgaaacaaagcaaaacaaagcaaaa
caaaacaacagttaagtttatggtttggctcccagcaccagtcagttatg
ttaaagcaaaaatgatccttcaatcagatgtatgccaggctagatactcc
cttcttgacactataaatacttgcctaaaactaggctcaggttctgtctt
cccatcctgctgtgtcaggagtacagggattccaaactcagcttgtaata
aagaccctaatgcactatatagagtatgctcttttgggtcttttggtatt
cat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_27422081_27423106
seq2: B6Ng01-072M24.g_68_1089

seq1  GAATTCACTTTACTTTTTTTCTTTCAACGTATAAAGCACATAACAAATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTACTTTTTTTCTTTCAACGTATAAAGCACATAACAAATGG  50

seq1  CTTTTTATTCATTTGTTAATACATTTCATACATTAATTTTTAAAAATGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTATTCATTTGTTAATACATTTCATACATTAATTTTTAAAAATGTA  100

seq1  TCTACATCTTTTTATTTCCATAAATACAAAAATATTTATATTATTTCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACATCTTTTTATTTCCATAAATACAAAAATATTTATATTATTTCCTT  150

seq1  TAGTCATTCTTTAATTCTTTAAAAGTATTGCTTACTCACATGTCTGGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCATTCTTTAATTCTTTAAAAGTATTGCTTACTCACATGTCTGGTGA  200

seq1  ACAGCCCTTTGGTGTGTACATGTCTGAACATAAATGATTTCCTAGCTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCCTTTGGTGTGTACATGTCTGAACATAAATGATTTCCTAGCTGAA  250

seq1  GACATTTGCAATTAAACATGAGAAATGAATTAGATATATAACAAATTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTTGCAATTAAACATGAGAAATGAATTAGATATATAACAAATTTAA  300

seq1  TAATAAGGAAAAATGAGTACTATAAATGAAGCTAATATGTTAATTATCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAGGAAAAATGAGTACTATAAATGAAGCTAATATGTTAATTATCAG  350

seq1  GAATGAGAGGAGTGGAGGTAAAGCCAGTAAAACAATGTGTATATAACCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAGAGGAGTGGAGGTAAAGCCAGTAAAACAATGTGTATATAACCTT  400

seq1  TATTAGCATGCAAGTTCTTCATGGATTGAGTAAACTATGACTCTGAAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGCATGCAAGTTCTTCATGGATTGAGTAAACTATGACTCTGAAGAC  450

seq1  ATCAGAAGAGTGTGGACAAGCTATTCAATACAGTGGGAAGAAAACAAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAAGAGTGTGGACAAGCTATTCAATACAGTGGGAAGAAAACAAACA  500

seq1  ATTATGACTGATTGTCCTGAAGTTACAGGTGAGAGACCAGATCTTTTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGACTGATTGTCCTGAAGTTACAGGTGAGAGACCAGATCTTTTGGT  550

seq1  TTCAGACACAATCTTAGAGAACCTGACCTAAGGTTCAACAAACAGGTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGACACAATCTTAGAGAACCTGACCTAAGGTTCAACAAACAGGTCAA  600

seq1  TACAGAGCACCAGTTTCCAGGTTTCCCTCTAACAAGACCTACGTTTAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGCACCAGTTTCCAGGTTTCCCTCTAACAAGACCTACGTTTAGCA  650

seq1  CCAGTTTCCAGGTTATTTCCCAACAAATCTACATCTTCAAGTTACAAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTTCCAGGTTATTTCCCAACAAATCTACATCTTCAAGTTACAAGAA  700

seq1  TGACCCTGATACTTCACTTCCTACCAACCCCCAATCAAGAAAAAACAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCTGATACTTCACTTCCTACCAACCCCCAATCAAGAAAAAACAAAA  750

seq1  CAAAACAAAACAAAACAAAACAAAACGAAACAAAGCAAAACAAAGCAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAAAACAAAACAAAACAAAACGAAACAAAGCAAAACAAAGCAAAA  800

seq1  CAAAACAACAGTTAAGTTTATGGTTTGGCTCCCAGCACCAGTCAGTTATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAACAGTTAAGTTTATGGTTTGGCTCCCAGCACCAGTCAGTTATG  850

seq1  TTAAAGCAAAAATGATCCTTCAATCAGATGTATGCCAGGCTAGATACTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGCAAAAATGATCCTTCAATCAGATGTATGCCAGGCTAGATACTCC  900

seq1  CTTCTTGACACTATAAATACTTGCCTAAAACTAGGCTCAGGGTTCTGTCT  950
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTTCTTGACACTATAAATACTTGCCTAAAACTAGGCTCA-GGTTCTGTCT  949

seq1  TCCCATCCTGCTGTGTCAGGAGTAACAGGGATTCCAAACTCAAGCTTGTA  1000
      ||||||||||||||||||||||| ||||||||||||||||| ||||||||
seq2  TCCCATCCTGCTGTGTCAGGAGT-ACAGGGATTCCAAACTC-AGCTTGTA  997

seq1  ATAAAGACCCTAATGCAACTATATAG  1026
      |||||||||||||||| |||||||||
seq2  ATAAAGACCCTAATGC-ACTATATAG  1022