BAC Information

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BAC

Clone NameB6Ng01-073P22
Chromosome11 (Build37)
Map Location 69,059,480 - 69,234,869
singlet/doubletdoublet
Overlap geneCntrob, Trappc1, Kcnab3, A030009H04Rik, Chd3, Cyb5d1, Lsmd1, Tmem88, Jmjd3, Dnahc2
Upstream geneNtn1, Pik3r5, BB220380, BC024997, Ccdc42, Myh10, Ndel1, 9930039A11Rik, Rpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik, Pfas, 1500010J02Rik, Aurkb, 2310047M10Rik, Tmem107, Vamp2, Per1, Hes7, Aloxe3, Alox12b, Alox8, Gucy2e
Downstream geneEfnb3, Wdr79, LOC100043030, Trp53, Atp1b2, Shbg, Sat2, LOC382532, Fxr2, Sox15, Mpdu1, Cd68, Eif4a1, Senp3, Tnfsf12-tnfsf13, Tnfsf13, Tnfsf12, LOC100041994, Polr2a, Amac1, Zbtb4, Chrnb1, Fgf11, Tmem102, 4933402P03Rik, 1700095G12Rik, Nlgn2, 1810027O10Rik, Plscr3, Tnk1, LOC432576, Kctd11, Centb1, 2810408A11Rik, 0610025P10Rik, Gps2, Eif5a, Ybx2, Slc2a4, LOC668442, Cldn7, Rai12, Dullard, Gabarap, Phf23, Dvl2, Acadvl, Dlg4, Asgr1, Asgr2, Mgl2, Mgl1, Slc16a11, Slc16a13, Bcl6b, 0610010K14Rik, D11Bwg0434e, Alox12, Alox12e, Alox15, LOC668466, Pelp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-073P22.bB6Ng01-073P22.g
ACCDH890965DH890966
length632610
definitionDH890965|Mus musculus domesticus DNA, BAC clone: B6Ng01-073P22, 5' end.DH890966|Mus musculus domesticus DNA, BAC clone: B6Ng01-073P22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,059,480 - 69,060,111)(69,234,261 - 69,234,869)
sequence
gaattcacagaaggaattcatttctatttgtggaatcactgctgcagcag
ataagaaaaaaacagtctttaaaagaggcaaaacaactcgtgtgtgtgtg
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgactaagcccagggcttta
caggcaagaagctggaagtgagctataacccccaaaccccaaacaacttt
tgaaacaaagaaggttggcttgagactgatccaaaaaaaacgtattcagt
tagagttaaaacaaaacaaaacaaaataaaaacaaacaagcaaacagata
ctatacaacacaacactgaagctaaagtagaggagggtagaaaccaggag
attccattccactatagtttatactgactactgaacagtgaggaagtgac
atagaaatatatacatgtccacttaaatggagagagagagagagagagag
tgagagagagagagagagagagagaatctggaggccctggcttctaccat
gtcctgcatagctgggtcctaattgggacaatgacagacactcttacaga
tcttctgggactatgagactttgctcttcctgacagaggacactctttac
aagacagcctgggtgaatttgaacttattaca
gaattcttgtttagtggaggcggagcccatgcagctggtctgcctcatgc
ccacgatccacttccgtccagcagagagccgaaagaaaagtgccaagggt
gggaaactgccccctccctatcccgtttggatactaacccatcctccctg
ctccagttcccaaatgcacttgctctgatcttccaggctccagaatctta
cttcttttcttctcccctaggcatgtactcctgtccctgctattattatc
ccaaccgggcaggcagcacagatcgagcctcctttgtcataggcatcgat
ctccgatctggatccatgacatctgatcactggattaagaggggcactgc
tctactgatgagcctggacagctgatgagctcttctctcctccttgagag
ggtcggaagccctaggaccttgaactaaagctggatctcaggctttgact
ttagctgaatctagcatatagtgacactctgacagtacctagtggcgcta
gcggaaaaggtggaagacttgtattggcgctcagtgcagtaaaaaccgtg
caaaaccaagccccaagtctctcaatgatggtgttttaatgtgtgtttgg
gggtggagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_69059480_69060111
seq2: B6Ng01-073P22.b_50_681

seq1  GAATTCACAGAAGGAATTCATTTCTATTTGTGGAATCACTGCTGCAGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGAAGGAATTCATTTCTATTTGTGGAATCACTGCTGCAGCAG  50

seq1  ATAAGAAAAAAACAGTCTTTAAAAGAGGCAAAACAACTCGTGTGTGTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAAAAAAACAGTCTTTAAAAGAGGCAAAACAACTCGTGTGTGTGTG  100

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGACTAAGCCCAGGGCTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGACTAAGCCCAGGGCTTTA  150

seq1  CAGGCAAGAAGCTGGAAGTGAGCTATAACCCCCAAACCCCAAACAACTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAAGAAGCTGGAAGTGAGCTATAACCCCCAAACCCCAAACAACTTT  200

seq1  TGAAACAAAGAAGGTTGGCTTGAGACTGATCCAAAAAAAACGTATTCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACAAAGAAGGTTGGCTTGAGACTGATCCAAAAAAAACGTATTCAGT  250

seq1  TAGAGTTAAAACAAAACAAAACAAAATAAAAACAAACAAGCAAACAGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTTAAAACAAAACAAAACAAAATAAAAACAAACAAGCAAACAGATA  300

seq1  CAATACAACACAACACTGAAGCTAAAGTAGAGGAGGGTAGAAACCAGGAG  350
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACAACACAACACTGAAGCTAAAGTAGAGGAGGGTAGAAACCAGGAG  350

seq1  ATTCCATTCCACTATAGTTTATACTGACTACAGAACAGTGAGGAAGTGAC  400
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATTCCATTCCACTATAGTTTATACTGACTACTGAACAGTGAGGAAGTGAC  400

seq1  ATAGAAATATATACATGTCCACTTAAATGGAGAGAGAGAGAGAGAGAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAATATATACATGTCCACTTAAATGGAGAGAGAGAGAGAGAGAGAG  450

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAATCAGGAGGCCCTGGCTTCTACCAT  500
       ||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TGAGAGAGAGAGAGAGAGAGAGAGAATCTGGAGGCCCTGGCTTCTACCAT  500

seq1  GTCCTGCATAGCTGGGTCCTAATTGGGACAATGACAGACACTCTTACAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGCATAGCTGGGTCCTAATTGGGACAATGACAGACACTCTTACAGA  550

seq1  GCGGCTGGGACTAGGAGACTGTGCTCACCCTGACAGAGGACACTCACTAC  600
       |  ||||||||| |||||| |||||  |||||||||||||||||  |||
seq2  TCTTCTGGGACTATGAGACTTTGCTCTTCCTGACAGAGGACACTCTTTAC  600

seq1  AAGACAGCCTGGGTGAATTTGAACTTATTACA  632
      ||||||||||||||||||||||||||||||||
seq2  AAGACAGCCTGGGTGAATTTGAACTTATTACA  632

seq1: chr11_69234261_69234869
seq2: B6Ng01-073P22.g_71_680 (reverse)

seq1  TCCTCCACCCCC-AACACACATTAAAACACCATCATTGAGAGACTTGGGG  49
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TCCTCCACCCCCAAACACACATTAAAACACCATCATTGAGAGACTTGGGG  50

seq1  CTTGGTTTTGCACGGTTTTTACTGCACTGAGCGCCAATACAAGTCTTCCA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTTTTGCACGGTTTTTACTGCACTGAGCGCCAATACAAGTCTTCCA  100

seq1  CCTTTTCCGCTAGCGCCACTAGGTACTGTCAGAGTGTCACTATATGCTAG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCCGCTAGCGCCACTAGGTACTGTCAGAGTGTCACTATATGCTAG  150

seq1  ATTCAGCTAAAGTCAAAGCCTGAGATCCAGCTTTAGTTCAAGGTCCTAGG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGCTAAAGTCAAAGCCTGAGATCCAGCTTTAGTTCAAGGTCCTAGG  200

seq1  GCTTCCGACCCTCTCAAGGAGGAGAGAAGAGCTCATCAGCTGTCCAGGCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCGACCCTCTCAAGGAGGAGAGAAGAGCTCATCAGCTGTCCAGGCT  250

seq1  CATCAGTAGAGCAGTGCCCCTCTTAATCCAGTGATCAGATGTCATGGATC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGTAGAGCAGTGCCCCTCTTAATCCAGTGATCAGATGTCATGGATC  300

seq1  CAGATCGGAGATCGATGCCTATGACAAAGGAGGCTCGATCTGTGCTGCCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCGGAGATCGATGCCTATGACAAAGGAGGCTCGATCTGTGCTGCCT  350

seq1  GCCCGGTTGGGATAATAATAGCAGGGACAGGAGTACATGCCTAGGGGAGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGGTTGGGATAATAATAGCAGGGACAGGAGTACATGCCTAGGGGAGA  400

seq1  AGAAAAGAAGTAAGATTCTGGAGCCTGGAAGATCAGAGCAAGTGCATTTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGAAGTAAGATTCTGGAGCCTGGAAGATCAGAGCAAGTGCATTTG  450

seq1  GGAACTGGAGCAGGGAGGATGGGTTAGTATCCAAACGGGATAGGGAGGGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTGGAGCAGGGAGGATGGGTTAGTATCCAAACGGGATAGGGAGGGG  500

seq1  GCAGTTTCCCACCCTTGGCACTTTTCTTTCGGCTCTCTGCTGGACGGAAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTTCCCACCCTTGGCACTTTTCTTTCGGCTCTCTGCTGGACGGAAG  550

seq1  TGGATCGTGGGCATGAGGCAGACCAGCTGCATGGGCTCCGCCTCCACTAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCGTGGGCATGAGGCAGACCAGCTGCATGGGCTCCGCCTCCACTAA  600

seq1  ACAAGAATTC  609
      ||||||||||
seq2  ACAAGAATTC  610