BAC Information

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BAC

Clone NameB6Ng01-074A15
Chromosome11 (Build37)
Map Location 116,389,976 - 116,559,561
singlet/doubletdoublet
Overlap geneSphk1, Ube2o, Aanat, Rhbdf2, Cygb, OTTMUSG00000003947, 1810032O08Rik, St6galnac2
Upstream geneSumo2, Nup85, Gga3, Mrps7, Mif4gd, Slc25a19, Grb2, LOC100043184, 2310067B10Rik, Caskin2, Tsen54, Llgl2, Recql5, 2210020M01Rik, Sap30bp, Itgb4, Galk1, H3f3b, Unk, Unc13d, Wbp2, Trim47, Trim65, Mrpl38, Fbf1, Acox1, 2310004N24Rik, Cdk3, Evpl, Srp68, Galr2, Exoc7, Foxj1, LOC668255, 1110014K08Rik, Qrich2, Prpsap1, LOC629971
Downstream geneLOC634720, BC018473, St6galnac1, Mxra7, Jmjd6, 1110005A03Rik, LOC100043293, Sfrs2, Mfsd11, Mgat5b, LOC100042036, Sec14l1, Sept9, EG667423, Tnrc6c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-074A15.bB6Ng01-074A15.g
ACCDH890999DH891000
length1,065735
definitionDH890999|Mus musculus domesticus DNA, BAC clone: B6Ng01-074A15, 5' end.DH891000|Mus musculus domesticus DNA, BAC clone: B6Ng01-074A15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,389,976 - 116,391,050)(116,558,828 - 116,559,561)
sequence
gaattctaatgatcctgaggtgtagccagggtcaccgaggcctaaaggaa
aggcttatatgggagacagagcctaaaggctcagtgggacttgagcccca
gtctcagtaaagtggcacaggagaacaaggaaagtagtgttctatggctg
tgaagagatgctgtgaccacagcgactcctataaagagaagcatttaatt
gggtctggcttacagtttccgagggttagttcatcctcgcatggcgggaa
gcatggcacacaggcaggcgtggtgctggagagagttcttagatctggat
tctcaggcagcaggaagagagaggacactgggccagcttgggctttgaaa
cctcagagctcaccacctccagtcatacacttcctccaacaagggcacac
ctcctaagaccactctctctaagcattcaaatgtatgagcctatgggggg
gcattcttattcaaaccatgacagagttgagggttgtcaccatgcagatg
cggtagtaaaaacattgcacagaagaggaaacccaaagtctatagtccaa
taggcagccagggatcttgtgaggcctgtctgtgccttcaggtctcccca
cgtggcttgcagcaccccaggccagtgcctggtatcatggaacagcatct
atgaactctcagcattggaacaccatgtcctggacagtctgggaacagga
gggtctctctttgatggggattggttctaatgctttgatttaattgggaa
tctgcatgtccaaacgttaaaggtccctgtgcccattggtttggatcgat
caagaaagatgccagtggccaaagactgggagacagggtgggacctttag
tttttcctagttttttagttcctggtgtgtctgaggacagcataaataca
acttaaaaaaaaaaaaaagccaggcgtggtggcgcagcctttaattccag
cacttgggagcagaggcaggcagatttccgagttctagaccagctggtct
cagcgtgagttccaggacagtgtgagccacagtgttgctgggattgaact
cagaacctctgaaag
gaattcacgggcaggtgtgtctggatgacacccagagaacaccggatcca
ctggtaacagaggctcagccacggtgacactgcggccacggaagacagct
tcagagacaagaggacagggaacagactgggaagaaacagggtcgctaag
ctaagaagagccagccgaacagtgtgctgtctgccttttagcttctgagg
acgagacatcgcttgaggatgttgtcgttatcatcacatttcgtgtatgt
ggacatgtgtgtacatctatacaatgccatgacgtagactgtggggtggc
tgggagttggttctctccttccactctgtgcgtcacaggatttgaactag
ggtcgtgagactcgacacctttacccactgagccggctcagtggccctgc
actttatgaactggggtcaggactccaccggggttgtgtggagggagtgg
ctgctaaagcaaaacctgagtctctggaggacacacagcaggggcggggt
ggggttaggaggctggatttcagagcctggaggatttcagagctggattt
caggccacaggtgtgagcaggaaccagtgggaagacagttcttaaccatt
tagtcacacctctgaggacagacacatccgcccttttgttccaaagttgc
ctagtcagtaaacaacctaggaggatgaattgggcgccttcctctggagc
agggcacatttttggcccgttgaggggagggtaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_116389976_116391050
seq2: B6Ng01-074A15.b_44_1108

seq1  GAATTCTAATGATCCTGAGGTGTAGCCAGGGTCACCGAGGCCTAAAGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAATGATCCTGAGGTGTAGCCAGGGTCACCGAGGCCTAAAGGAA  50

seq1  AGGCTTATATGGGAGACAGAGCCTAAAGGCTCAGTGGGACTTGAGCCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTATATGGGAGACAGAGCCTAAAGGCTCAGTGGGACTTGAGCCCCA  100

seq1  GTCTCAGTAAAGTGGCACAGGAGAACAAGGAAAGTAGTGTTCTATGGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAGTAAAGTGGCACAGGAGAACAAGGAAAGTAGTGTTCTATGGCTG  150

seq1  TGAAGAGATGCTGTGACCACAGCGACTCCTATAAAGAGAAGCATTTAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAGATGCTGTGACCACAGCGACTCCTATAAAGAGAAGCATTTAATT  200

seq1  GGGTCTGGCTTACAGTTTCCGAGGGTTAGTTCATCCTCGCATGGCGGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTGGCTTACAGTTTCCGAGGGTTAGTTCATCCTCGCATGGCGGGAA  250

seq1  GCATGGCACACAGGCAGGCGTGGTGCTGGAGAGAGTTCTTAGATCTGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGCACACAGGCAGGCGTGGTGCTGGAGAGAGTTCTTAGATCTGGAT  300

seq1  TCTCAGGCAGCAGGAAGAGAGAGGACACTGGGCCAGCTTGGGCTTTGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGGCAGCAGGAAGAGAGAGGACACTGGGCCAGCTTGGGCTTTGAAA  350

seq1  CCTCAGAGCTCACCACCTCCAGTCATACACTTCCTCCAACAAGGGCACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGAGCTCACCACCTCCAGTCATACACTTCCTCCAACAAGGGCACAC  400

seq1  CTCCTAAGACCACTCTCTCTAAGCATTCAAATGTATGAGCCTATGGGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAAGACCACTCTCTCTAAGCATTCAAATGTATGAGCCTATGGGGGG  450

seq1  GCATTCTTATTCAAACCATGACAGAGTTGAGGGTTGTCACCATGCAGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCTTATTCAAACCATGACAGAGTTGAGGGTTGTCACCATGCAGATG  500

seq1  CGGTAGTAAAAACATTGCACAGAAGAGGAAACCCAAAGTCTATAGTCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTAGTAAAAACATTGCACAGAAGAGGAAACCCAAAGTCTATAGTCCAA  550

seq1  TAGGCAGCCAGGGATCTTGTGAGGCCTGTCTGTGCCTTCAGGTCTCCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCAGCCAGGGATCTTGTGAGGCCTGTCTGTGCCTTCAGGTCTCCCCA  600

seq1  CGTGGCTTGCAGCACCCCAGGCCAGTGCCTGGTATCATGGAACAGCATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGCTTGCAGCACCCCAGGCCAGTGCCTGGTATCATGGAACAGCATCT  650

seq1  ATGAACTCTCAGCATTGGAACACCATGTCCTGGACAGTCTGGGAACAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACTCTCAGCATTGGAACACCATGTCCTGGACAGTCTGGGAACAGGA  700

seq1  GGGTCTCTCTTTGATGGGGATTGGTTCTAATGCTTTGATTTAATTGGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTCTCTTTGATGGGGATTGGTTCTAATGCTTTGATTTAATTGGGAA  750

seq1  TCTGCATGTCCAAACGTTAAAGGTCCCTGTGCCCATTGGTTTGGATCGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCATGTCCAAACGTTAAAGGTCCCTGTGCCCATTGGTTTGGATCGAT  800

seq1  CAAGAAAGATGCCAGTGGCCAAAGACTGGGAGACAGGGTGGGACCTTTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAGATGCCAGTGGCCAAAGACTGGGAGACAGGGTGGGACCTTTAG  850

seq1  TTTTTCCTAGTTTTTTAGTTCCTGGTGTGTCTGAGGACAGCATAAATACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCTAGTTTTTTAGTTCCTGGTGTGTCTGAGGACAGCATAAATACA  900

seq1  ACTTAAAAAAAAAAAAAAAGCCAGGCGTGGTGGCGCAGGCCTTTAATTCC  950
      |||| |||||||||||||||||||||||||||||||| ||||||||||||
seq2  ACTT-AAAAAAAAAAAAAAGCCAGGCGTGGTGGCGCA-GCCTTTAATTCC  948

seq1  AGCACTTGGGAGGCAGAGGCAGGCAGATTTCCGAGTTCGAGACCAGCCTG  1000
      ||||||||||| |||||||||||||||||||||||||| ||||||| |||
seq2  AGCACTTGGGA-GCAGAGGCAGGCAGATTTCCGAGTTCTAGACCAG-CTG  996

seq1  GTCTACAGCGTGAGTTCCAGGACAGTTGTGAGCCACCATGTGGTTGCTGG  1050
      |||| |||||||||||||||||||| ||||||||||  |   ||||||||
seq2  GTCT-CAGCGTGAGTTCCAGGACAG-TGTGAGCCACAGT---GTTGCTGG  1041

seq1  GATTTGAACTCAGGACCTCTGAAAG  1075
      || |||||||||| |||||||||||
seq2  GA-TTGAACTCAGAACCTCTGAAAG  1065

seq1: chr11_116558828_116559561
seq2: B6Ng01-074A15.g_67_801 (reverse)

seq1  ATTACCCTCCCCTCAACGGGCC-AAAATGTGCCCCTGCTCCAGAGGAAGG  49
      |||||||||||||||||||||| |||||||| ||||||||||||||||||
seq2  ATTACCCTCCCCTCAACGGGCCAAAAATGTG-CCCTGCTCCAGAGGAAGG  49

seq1  CGCCATCTTCATCCTCCTAGGTTGTTTACTGACTAGGCAACTTTGGAACA  99
      ||||   |||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCAATTCATCCTCCTAGGTTGTTTACTGACTAGGCAACTTTGGAACA  99

seq1  AAAGGGCGGATGTGTCTGTCCTCAGAGGTGTGACT-AATGGTTAAGAACT  148
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AAAGGGCGGATGTGTCTGTCCTCAGAGGTGTGACTAAATGGTTAAGAACT  149

seq1  GTCTTCCCACTGGTTCCTGCTCACACCTGTGGCCTGAAATCCAGCTCTGA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCCCACTGGTTCCTGCTCACACCTGTGGCCTGAAATCCAGCTCTGA  199

seq1  AATCCTCCAGGCTCTGAAATCCAGCCTCCTAACCCCACCCCGCCCCTGCT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTCCAGGCTCTGAAATCCAGCCTCCTAACCCCACCCCGCCCCTGCT  249

seq1  GTGTGTCCTCCAGAGACTCAGGTTTTGCTTTAGCAGCCACTCCCTCCACA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCCTCCAGAGACTCAGGTTTTGCTTTAGCAGCCACTCCCTCCACA  299

seq1  CAACCCCGGTGGAGTCCTGACCCCAGTTCATAAAGTGCAGGGCCACTGAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCCGGTGGAGTCCTGACCCCAGTTCATAAAGTGCAGGGCCACTGAG  349

seq1  CCGGCTCAGTGGGTAAAGGTGTCGAGTCTCACGACCCTAGTTCAAATCCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCTCAGTGGGTAAAGGTGTCGAGTCTCACGACCCTAGTTCAAATCCT  399

seq1  GTGACGCACAGAGTGGAAGGAGAGAACCAACTCCCAGCCACCCCACAGTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACGCACAGAGTGGAAGGAGAGAACCAACTCCCAGCCACCCCACAGTC  449

seq1  TACGTCATGGCATTGTATAGATGTACACACATGTCCACATACACGAAATG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTCATGGCATTGTATAGATGTACACACATGTCCACATACACGAAATG  499

seq1  TGATGATAACGACAACATCCTCAAGCGATGTCTCGTCCTCAGAAGCTAAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGATAACGACAACATCCTCAAGCGATGTCTCGTCCTCAGAAGCTAAA  549

seq1  AGGCAGACAGCACACTGTTCGGCTGGCTCTTCTTAGCTTAGCGACCCTGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGACAGCACACTGTTCGGCTGGCTCTTCTTAGCTTAGCGACCCTGT  599

seq1  TTCTTCCCAGTCTGTTCCCTGTCCTCTTGTCTCTGAAGCTGTCTTCCGTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCCAGTCTGTTCCCTGTCCTCTTGTCTCTGAAGCTGTCTTCCGTG  649

seq1  GCCGCAGTGTCACCGTGGCTGAGCCTCTGTTACCAGTGGATCCGGTGTTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGCAGTGTCACCGTGGCTGAGCCTCTGTTACCAGTGGATCCGGTGTTC  699

seq1  TCTGGGTGTCATCCAGACACACCTGCCCGTGAATTC  734
      ||||||||||||||||||||||||||||||||||||
seq2  TCTGGGTGTCATCCAGACACACCTGCCCGTGAATTC  735