BAC Information

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BAC

Clone NameB6Ng01-074B01
Chromosome11 (Build37)
Map Location 24,678,540 - 24,679,771
singlet/doubletsinglet
Overlap genenone
Upstream genePapolg, A830031A19Rik, LOC100042256, Bcl11a
Downstream geneLOC100042282, 5730522E02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-074B01.bB6Ng01-074B01.g
ACCDH891017DH891018
length1,243902
definitionDH891017|Mus musculus domesticus DNA, BAC clone: B6Ng01-074B01, 5' end.DH891018|Mus musculus domesticus DNA, BAC clone: B6Ng01-074B01, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccttgcaggtaattgaaggccaactgtagcaggtctaccccttct
agtttagaatggagtctagaacctgagaattttatcagtgttgtttttct
gtctgcatctgaaatcctttccctctctttgttctggagccagtttttag
ggtctgagtctgaccagttatccaagaacaagatgccaggctccagatgt
cctgctataaactcaactttgcagggatgtccgggccttgcaatctgtct
gcataatatcctttctctgtagagaaagacattagaaaaaagatggcttt
ctaaggcgagggacaggacaggcaccttcgttatggtatgataaccatct
gtttaaggagttagcactactaattggtctctcaccttcagtataaaaaa
atgcacctctaactcagggtcattgtatagttctcacatcaaaatcttca
ttaaatgaaacccgaagtggtatagactactctttattttttctttcttt
tccttttctttcctttctttctttttttatgtcatggaaatgaaaatgac
tgccaggaaggcacagagaaaactcgcatgacagatggaagaatttctga
gaccagggaagtttgtaatttatatttcttaggaccagtacaaagcactc
tccaatgagcccaggctgctgtccttcaggaggctggtcagggagctgct
aaatgtggactgtctgataactttgggttttcaggatgtaatgctcagac
agaatccttgtcttcatgaaacttacaattttctaggtttattcctctca
ctgaataggtgggttctgaaataaaggttggactcatagtgaggcagagt
aaaaactattcataatgatttaagaacagatttttaaaaaatgtgcccaa
cccactttcccccaaaacataaaacaactgtgctctctgcttgttacagt
ggcctgaaacatcaccatttgggacagattacaggcaccttctgaaagtg
aaatttatacacactcttcttactagtatacaagcatcttcagtgagaac
ctcaacatgtggcctgatttttctcccaacacagaaatctggaggacaaa
gcactgggcatgggagacccacacaggtggggtggagccacccataatag
ttaaattaggtaggaagaagagcgatgtgtcgaacggtcctctggcttgc
actggaactcttctcttaaccttgtgggtgtaagtgtaaagaa

gaattcattcatatatatatatatatatatatatatatatatatatatat
atatattcatatatccaagaaaatcaaccagcagtcctcagtcagtatgt
gctcaaaaagacctttacagagaaaaatatcaaattgtctgaagacaaga
agaatcttgaagggaagaagagagcaatttgttacattccagaaacctta
ggcaagattacagtgatacttccagaagttcttttattgttcaggattct
tttagctatcctggattgttttgggttttttgttgttgttgttggttttc
catatgaagttgagaactgtttttgtttttgttttttgtttttatttttt
aagatctgtaaaaatttttgttggacctttgaaggggactgcattgaatc
tgcaaataacttttggtaagatggtcatttttactgttaatcccattaat
ccatgagcatggaagatctttccatcttctgatatcatccacaatttctt
tcttcagagacttaaaggtcttgtcatataggattttcatacaggtctca
cttggttcgagttataccaaagtattttatattatttgtggctattgaga
tgggtactatgtccctgacttctttctcagcccacttatcacttgtgtag
aggaggaaattatcaatggctccaggctgtcatacagagcaatagtcata
aaaactgcatggtgggtgtagtgtgaataaataaataaatttatttataa
ataaacaaattttttaaaaagattatgggaggcttcttatctgatagaat
gttctgtcaaaatgctcaaaacaaaaaaaaatgctcaaaacacacacata
cacatacatacacttataaatacacatacacgtatacacaagcacaaaca
tc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_24678540_24679771
seq2: B6Ng01-074B01.b_42_1283

seq1  GAATTCCTTGCAGGTAATTGAAGGCCAACTGTAGCAGGTCTACCCCTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGCAGGTAATTGAAGGCCAACTGTAGCAGGTCTACCCCTTCT  50

seq1  AGTTTAGAATGGAGTCTAGAACCTGAGAATTTTATCAGTGTTGTTTTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAGAATGGAGTCTAGAACCTGAGAATTTTATCAGTGTTGTTTTTCT  100

seq1  GTCTGCATCTGAAATCCTTTCCCTCTCTTTGTTCTGGAGCCAGTTTTTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCATCTGAAATCCTTTCCCTCTCTTTGTTCTGGAGCCAGTTTTTAG  150

seq1  GGTCTGAGTCTGACCAGTTATCCAAGAACAAGATGCCAGGCTCCAGATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGAGTCTGACCAGTTATCCAAGAACAAGATGCCAGGCTCCAGATGT  200

seq1  CCTGCTATAAACTCAACTTTGCAGGGATGTCCGGGCCTTGCAATCTGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTATAAACTCAACTTTGCAGGGATGTCCGGGCCTTGCAATCTGTCT  250

seq1  GCATAATATCCTTTCTCTGTAGAGAAAGACATTAGAAAAAAGATGGCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAATATCCTTTCTCTGTAGAGAAAGACATTAGAAAAAAGATGGCTTT  300

seq1  CTAAGGCGAGGGACAGGACAGGCACCTTCGTTATGGTATGATAACCATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGCGAGGGACAGGACAGGCACCTTCGTTATGGTATGATAACCATCT  350

seq1  GTTTAAGGAGTTAGCACTACTAATTGGTCTCTCACCTTCAGTATAAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAGGAGTTAGCACTACTAATTGGTCTCTCACCTTCAGTATAAAAAA  400

seq1  ATGCACCTCTAACTCAGGGTCATTGTATAGTTCTCACATCAAAATCTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACCTCTAACTCAGGGTCATTGTATAGTTCTCACATCAAAATCTTCA  450

seq1  TTAAATGAAACCCGAAGTGGTATAGACTACTCTTTATTTTTTCTTTCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGAAACCCGAAGTGGTATAGACTACTCTTTATTTTTTCTTTCTTT  500

seq1  TCCTTTTCTTTCCTTTCTTTCTTTTTTTATGTCATGGAAATGAAAATGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTCTTTCCTTTCTTTCTTTTTTTATGTCATGGAAATGAAAATGAC  550

seq1  TGCCAGGAAGGCACAGAGAAAACTCGCATGACAGATGGAAGAATTTCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGGAAGGCACAGAGAAAACTCGCATGACAGATGGAAGAATTTCTGA  600

seq1  GACCAGGGAAGTTTGTAATTTATATTTCTTAGGACCAGTACAAAGCACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGGGAAGTTTGTAATTTATATTTCTTAGGACCAGTACAAAGCACTC  650

seq1  TCCAATGAGCCCAGGCTGCTGTCCTTCAGGAGGCTGGTCAGGGAGCTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATGAGCCCAGGCTGCTGTCCTTCAGGAGGCTGGTCAGGGAGCTGCT  700

seq1  AAATGTGGACTGTCTGATAACTTTGGGTTTTCAGGATGTAATGCTCAGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGGACTGTCTGATAACTTTGGGTTTTCAGGATGTAATGCTCAGAC  750

seq1  AGAATCCTTGTCTTCATGAAACTTACAATTTTCTAGGTTTATTCCTCTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCCTTGTCTTCATGAAACTTACAATTTTCTAGGTTTATTCCTCTCA  800

seq1  CTGAATAGGTGGGTTCTGAAATAAAGGTTGGACTCATAGTGAGGCAGAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATAGGTGGGTTCTGAAATAAAGGTTGGACTCATAGTGAGGCAGAGT  850

seq1  AAAAACTATTCATAATGATTTAAGAACAGATTTTTAAAAAATGTGCCCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTATTCATAATGATTTAAGAACAGATTTTTAAAAAATGTGCCCAA  900

seq1  CCCACTTTCCCCCAAAACATAAAACAACTGTGCTCTCTGCTTGTTACAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTTTCCCCCAAAACATAAAACAACTGTGCTCTCTGCTTGTTACAGT  950

seq1  GGCCTGAAACATCACCATTTGGGACAGATTACAGGCACCTTCTGAAAGTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGAAACATCACCATTTGGGACAGATTACAGGCACCTTCTGAAAGTG  1000

seq1  AAATTTATACACACTC-TCTTACTAGTATACAAGCATCTTCAGTGAGAAC  1049
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AAATTTATACACACTCTTCTTACTAGTATACAAGCATCTTCAGTGAGAAC  1050

seq1  CTCAACATGTGG-CTGATTTTTCTTCCCAACACAGACATCT-GAGGACAA  1097
      |||||||||||| |||||||||| |||||||||||| |||| ||||||||
seq2  CTCAACATGTGGCCTGATTTTTC-TCCCAACACAGAAATCTGGAGGACAA  1099

seq1  AGCACTGGGCAATGGAGA-CCACACAGGTGGG--TGAGCAACCCATAATA  1144
      |||||||||||  ||||| |||||||||||||   |||| ||||||||||
seq2  AGCACTGGGCATGGGAGACCCACACAGGTGGGGTGGAGCCACCCATAATA  1149

seq1  GTAAA------TAGTAAGAAGAGAACGATGTGGTCAGACAGTGCCTCT-G  1187
      || ||      ||| ||||||||  |||||| |||  || || ||||| |
seq2  GTTAAATTAGGTAGGAAGAAGAG--CGATGT-GTCGAACGGT-CCTCTGG  1195

seq1  CCTGCACTTGGACATCTTCTCTAAACCTTGTG---GTGAATGTAAAGA  1232
      | ||||| ||||  |||||||| |||||||||   || | ||||||||
seq2  CTTGCAC-TGGAACTCTTCTCTTAACCTTGTGGGTGTAAGTGTAAAGA  1242


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