BAC Information

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BAC

Clone NameB6Ng01-077A05
Chromosome11 (Build37)
Map Location 120,956,829 - 121,112,891
singlet/doubletdoublet
Overlap geneLOC637008, 4921530G04Rik, Tex19, Uts2r, 1110031I02Rik, Hexdc, BC017643, Narf
Upstream gene2410002I01Rik, 1810043H04Rik, 1810073N04Rik, 2810410L24Rik, LOC100042332, LOC100043384, LOC100043389, Bahcc1, Actg1, Fscn2, 2310003H01Rik, Nploc4, Tspan10, Pde6g, 1810049H13Rik, 3110023B02Rik, 2600005N12Rik, Hgs, Mrpl12, Slc25a10, LOC667716, Gcgr, BC003940, Dysfip1, P4hb, Arhgdia, LOC100042371, Thoc4, Anapc11, Npb, Pcyt2, Sirt7, Mafg, Pycr1, 1110012N22Rik, 5730593N15Rik, Aspscr1, Stra13, Lrrc45, Rac3, Dcxr, Cbr2, Hmga1-rs1, LOC667778, Rfng, Gps1, Dus1l, Fasn, Ccdc57, LOC100043454, Slc16a3, Csnk1d, Cd7, Sectm1b, Sectm1a
Downstream geneFoxk2, Wdr45l, Rab40b, BC032265, Fn3k, Tbcd, Zfp750, B3gntl1, Metrnl, Ptchd3, LOC667879, LOC674842
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077A05.bB6Ng01-077A05.g
ACCDH893100DH893101
length4221,085
definitionDH893100|Mus musculus domesticus DNA, BAC clone: B6Ng01-077A05, 5' end.DH893101|Mus musculus domesticus DNA, BAC clone: B6Ng01-077A05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,956,829 - 120,957,256)(121,111,803 - 121,112,891)
sequence
aactttttggaaattgaaataataagaacaattttttttaattccagaag
gatacagcaagtactatttctttcaggcaagggttgtgaaagttgggctt
aagaagaaattccatcggccatctgtcactagtccccagggacatttgtc
acattgactcacaagaagttatttaaaaaattgttcccgacagcagcagc
ggtcgccatcttggtccgggacccgccgaacttaggaaattagtctgaac
aggtgagagggtgcgctcagtacccctgagctcttgactctagctgcata
tgtatcaaaagatggcctagtcggccatcactggaaagagaggcccattg
gacacgcagactttgtgtgccccggtacaggggaacgccagggccaaagg
gggggagtgggtgggtagggga
gaattcttgtgtcctacttgagaaccgcaagcccaggatgacctagacat
tcccgatctggagacagctccttcatacccagggtcatagacacactact
tcagaaggctccctcattctccagtactgacccctagacattcctgatct
ggagacagctccttcacacccagggtcatagacacactacttcagatggc
tccctcattctctagtacttacccctaatgtatgagcaagagatccaggc
actcggtcctgtcatcgctctggcctgctctcatgtctccccatcccagt
gggaactttccttacccgcctgggactttacacctgcatggttcaatttt
cctctgcagcctggggaactcttagacagcaagtgacacctgccttttcc
tgctgccacctcactgttcccttccctgtgtactgactccatgtgagtga
cctcaggagctgcttcccatctggtaatcaggtgaggttttcatgtgaca
cccacaagggaaggtctaaggatacaactatctacttctcacactacagt
tgagggaagggaaccttcatggctgaggatggcatgccatggcgtggggg
aacatcctgccttcacaattcctgttggacaggctgtcgggggccctgtg
aaccccttacctctgggacacgcgagcacctccacaaagtggtatgggag
tttgcccttcttgagcttctggatcatgttctgaatgttgcgaaagccgt
acgctgcagcaaagcgcagtaggacctccccgttcttctcaagggtaacc
tcatggaagtctttgttccttataatcaataaagctgatttgaatggcca
gtgacctaagatcacttctgttagtctgaggtacagtctcactatgtagc
ccaggctaggtttaccgtatctgccagtttttaaatctaagttttgatgt
caccagatgtcaatggaaacacactaaaggcccgtctactgtaccagcac
tggtctttccaatgcaacagcccacaggtagagcagctaatatcccattg
atcccaggcacatcgcctatctgcatggttgccac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_120956829_120957256
seq2: B6Ng01-077A05.b_45_472

seq1  GAATTCAACTTTTTGGAAATTGAAATAATAAGAACAATTTTTTTTAATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTTTTTGGAAATTGAAATAATAAGAACAATTTTTTTTAATTC  50

seq1  CAGAAGGATACAGCAAGTACTATTTCTTTCAGGCAAGGGTTGTGAAAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGGATACAGCAAGTACTATTTCTTTCAGGCAAGGGTTGTGAAAGTT  100

seq1  GGGCTTAAGAAGAAATTCCATCGGCCATCTGTCACTAGTCCCCAGGGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTAAGAAGAAATTCCATCGGCCATCTGTCACTAGTCCCCAGGGACA  150

seq1  TTTGTCACATTGACTCACAAGAAGTTATTTAAAAAATTGTTCCCGACAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCACATTGACTCACAAGAAGTTATTTAAAAAATTGTTCCCGACAGC  200

seq1  AGCAGCGGTCGCCATCTTGGTCCGGGACCCGCCGAACTTAGGAAATTAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCGGTCGCCATCTTGGTCCGGGACCCGCCGAACTTAGGAAATTAGT  250

seq1  CTGAACAGGTGAGAGGGTGCGCTCAGTACCCCTGAGCTCTTGACTCTAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACAGGTGAGAGGGTGCGCTCAGTACCCCTGAGCTCTTGACTCTAGC  300

seq1  TGCATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGC  350

seq1  CCATTGGACACGCAGACTTTGTGTGCCCCGGTACAGGGGAACGCCAGGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGGACACGCAGACTTTGTGTGCCCCGGTACAGGGGAACGCCAGGGC  400

seq1  CAAAGGGGGGGAGTGGGTGGGTAGGGGA  428
      ||||||||||||||||||||||||||||
seq2  CAAAGGGGGGGAGTGGGTGGGTAGGGGA  428

seq1: chr11_121111803_121112891
seq2: B6Ng01-077A05.g_69_1153 (reverse)

seq1  GTGGCATACATGCAGTATGGGCGCTGTGCCTGGGGTCTATGGGATATTTA  50
      ||||||  ||||||| || |||| |||||||||| || |||||||| |||
seq2  GTGGCAACCATGCAG-ATAGGCGATGTGCCTGGGATCAATGGGATA-TTA  48

seq1  GCTGCTCTACCTGT-GGCTGTTCCA-TGGGAAGACCAGTGCTGGTTACAG  98
      |||||||||||||| ||||||| || ||| |||||||||||||| |||||
seq2  GCTGCTCTACCTGTGGGCTGTTGCATTGGAAAGACCAGTGCTGG-TACAG  97

seq1  TAGACGGGCCTTTTGTGTGTTTCCATTGACATCTTGGTGACATTCAAAAC  148
      ||||||||||||| ||||||||||||||||||| |||||||| |||||||
seq2  TAGACGGGCCTTTAGTGTGTTTCCATTGACATC-TGGTGACA-TCAAAAC  145

seq1  TTAGATTTAAAAACTGGCAGATACGGTAAACCTAGCCTGGGCTACATAGT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATTTAAAAACTGGCAGATACGGTAAACCTAGCCTGGGCTACATAGT  195

seq1  GAGACTGTACCTCAGACTAACAGAAGTGATCTTTAGGTCACTGGCCATTC  248
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GAGACTGTACCTCAGACTAACAGAAGTGATC-TTAGGTCACTGGCCATTC  244

seq1  AAATCAGCTTTATTGATTTATAGGAACAAAGACTTCCATGAGGTTACCCT  298
      ||||||||||||||||||   |||||||||||||||||||||||||||||
seq2  AAATCAGCTTTATTGATTATAAGGAACAAAGACTTCCATGAGGTTACCCT  294

seq1  TGAGAAGAACGGGGAGGTCCTACTGCGCTTTGCTGCAGCGTACGGCTTTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGAACGGGGAGGTCCTACTGCGCTTTGCTGCAGCGTACGGCTTTC  344

seq1  GCAACATTCAGAACATGATCCAGAAGCTCAAGAAGGGCAAACTCCCATAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACATTCAGAACATGATCCAGAAGCTCAAGAAGGGCAAACTCCCATAC  394

seq1  CACTTTGTGGAGGTGCTCGCGTGTCCCAGAGGTAAGGGGTTCACAGGGCC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTGTGGAGGTGCTCGCGTGTCCCAGAGGTAAGGGGTTCACAGGGCC  444

seq1  CCCGACAGCCTGTCCAACAGGAATTGTGAAGGCAGGATGTTCCCCCACGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGACAGCCTGTCCAACAGGAATTGTGAAGGCAGGATGTTCCCCCACGC  494

seq1  CATGGCATGCCATCCTCAGCCATGAAGGTTCCCTTCCCTCAACTGTAGTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCATGCCATCCTCAGCCATGAAGGTTCCCTTCCCTCAACTGTAGTG  544

seq1  TGAGAAGTAGATAGTTGTATCCTTAGACCTTCCCTTGTGGGTGTCACATG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGTAGATAGTTGTATCCTTAGACCTTCCCTTGTGGGTGTCACATG  594

seq1  AAAACCTCACCTGATTACCAGATGGGAAGCAGCTCCTGAGGTCACTCACA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTCACCTGATTACCAGATGGGAAGCAGCTCCTGAGGTCACTCACA  644

seq1  TGGAGTCAGTACACAGGGAAGGGAACAGTGAGGTGGCAGCAGGAAAAGGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTCAGTACACAGGGAAGGGAACAGTGAGGTGGCAGCAGGAAAAGGC  694

seq1  AGGTGTCACTTGCTGTCTAAGAGTTCCCCAGGCTGCAGAGGAAAATTGAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTCACTTGCTGTCTAAGAGTTCCCCAGGCTGCAGAGGAAAATTGAA  744

seq1  CCATGCAGGTGTAAAGTCCCAGGCGGGTAAGGAAAGTTCCCACTGGGATG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCAGGTGTAAAGTCCCAGGCGGGTAAGGAAAGTTCCCACTGGGATG  794

seq1  GGGAGACATGAGAGCAGGCCAGAGCGATGACAGGACCGAGTGCCTGGATC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGACATGAGAGCAGGCCAGAGCGATGACAGGACCGAGTGCCTGGATC  844

seq1  TCTTGCTCATACATTAGGGGTAAGTACTAGAGAATGAGGGAGCCATCTGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTCATACATTAGGGGTAAGTACTAGAGAATGAGGGAGCCATCTGA  894

seq1  AGTAGTGTGTCTATGACCCTGGGTGTGAAGGAGCTGTCTCCAGATCAGGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTGTGTCTATGACCCTGGGTGTGAAGGAGCTGTCTCCAGATCAGGA  944

seq1  ATGTCTAGGGGTCAGTACTGGAGAATGAGGGAGCCTTCTGAAGTAGTGTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTAGGGGTCAGTACTGGAGAATGAGGGAGCCTTCTGAAGTAGTGTG  994

seq1  TCTATGACCCTGGGTATGAAGGAGCTGTCTCCAGATCGGGAATGTCTAGG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGACCCTGGGTATGAAGGAGCTGTCTCCAGATCGGGAATGTCTAGG  1044

seq1  TCATCCTGGGCTTGCGGTTCTCAAGTAGGACACAAGAATTC  1089
      |||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCTGGGCTTGCGGTTCTCAAGTAGGACACAAGAATTC  1085