BAC Information

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BAC

Clone NameB6Ng01-077D19
Chromosome11 (Build37)
Map Location 94,663,027 - 94,663,716
singlet/doubletsinglet
Overlap geneLOC544807
Upstream geneUtp18, Mbtd1, Nme2, Nme1, Spag9, LOC100039431, LOC100039440, Tob1, Wfikkn2, 3300001P08Rik, Ankrd40, Abcc3, Cacna1g, Spata20, Epn3, Mycbpap, Rsad1, BC018371, Chad, Lrrc59, Eme1, Mrpl27, Xylt2, OTTMUSG00000002038, Cdc34-ps, A430060F13Rik, Tmem92, LOC100039410
Downstream geneLOC544808, LOC665174, LOC432591, LOC100039739, Col1a1, Sgca, Hils1, Ppp1r9b, Samd14, Pdk2, Itga3, Dlx3, Dlx4, LOC100039437, Tac4, Myst2, 5730593F17Rik, Slc35b1, Spop, LOC100039483, Nxph3, Ngfr, Phb, 1110035M17Rik, Zfp652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077D19.bB6Ng01-077D19.g
ACCDH893267DH893268
length1,232693
definitionDH893267|Mus musculus domesticus DNA, BAC clone: B6Ng01-077D19, 5' end.DH893268|Mus musculus domesticus DNA, BAC clone: B6Ng01-077D19, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgccaatttctgagtatatctatcccaattatacattctggaac
tggggaaatcaccacaggatgtgtccggggacctactggacctactgtga
gtcggacatcagtcaaaactccattaatcacctgccctccataagcccct
actttaactggagggccacaatgtttcttgggatcccctgggatcagtgt
caactcagaaccagtatccagcagaccccgaaaagtctgattatttcctt
ttccccagtgtacagttacccttgtaaaaggccgtaggtccctctgggga
agaactggagaaagggtaacagcaaaacctttgagtgtcttatcaagatc
cttcctcagaggaacctggccaccccttcattcaaggggttccggatctg
caaactgtctcaagtctggaaattgattcactggccgagattgctgttta
ccacgatctaatgtagcctttctttcatttgtttgagaatttttctgctt
atacagatcaaacaaatatgcagtaggcttcctatgtatttcattcctgg
aaacaccatgattgattagccagtaccaaaggtccaagcgagtcatgcca
ttataaatttcacctctcctgtgctgaccattactgggtatgttattata
aacattcttttgtctacgctgtccattataataactagaatcaccttgtc
tccggcgattcaatgctgccacctggcccttgttacctcgggatccaact
aaacccagtgaatttaattcatctaattgagcagaagcatctccaatgct
aagatctggcacaaggaaaagggaaagaacaaaacccttcaaatgtgctg
gtgcccctctcaccaatttgcgtcttatagagctggtgaaaggcatatct
tctggaccttcccattgtggacaattatgctttacacaatatatccactc
tagcattgcaatttccctaagtcttaaaatcccttcatcaacactaagca
cggaatatcagcatctcaagtcatttccagtaggccatccttttggataa
acacctcagccaccatcaaaaactttgacaccttttactatgcgagcttc
cgtattaacctagaatctcttactcgaggaccatgttcaataaccagcct
gctctaggtttatgtctcacctagtccagccttaactcattcccacattc
acagctttctgtccttgaagtgaatatagcca
gaattcactcatgtagaccaggctagccttgaactcagaaatcctcttgc
ctctgcatcccaagagctggaattaaaggcatgtggcaccacttccggcc
tataaatctttaaaaagataaaaataaaaagacttgtgataccaccacct
ggggttttttgtttgtttgtttgtttgtttttgtttttgttttttcattt
aatccaggctctggtctggattggatctcactaattagatcatactagct
ttgaactcacagagatttgcctcctccctgatgggattaaaggctgtgtc
accacgccctgctctatccactatttaagcacagccaagcagagggactt
ccacagtgctctcctccatccaacctacgaggctggtaaatcaacgtctt
ctaacctcccacctcccagttcctcaaactcaagcaaggccagctcctct
ccacttctcttccctgagctcctgttcagcttgcagccctggtccagcca
actccagtgtgttaactctgggcctatcctgaggctggccccataggtgg
agagaagtggaaaaggtcctgccctgtcactctgtccttacactctgaag
atcagtggccccctttgacatgatgctggacgcctggatctggggcacac
ttaccttgacctttggcctgctttccagtctccaatggagtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_94663027_94663716
seq2: B6Ng01-077D19.g_68_760 (reverse)

seq1  TTACTCC-TTGGAGACTGGAAAGCAGGCCAAAGGTCAAGGTGAGTGTGCC  49
      ||||||| ||||||||||||||||||||||||||||||||| ||||||||
seq2  TTACTCCATTGGAGACTGGAAAGCAGGCCAAAGGTCAAGGTAAGTGTGCC  50

seq1  CCAGATCCAGGCGTCCAGCATCCTGTC-AAGGGGGCCACTGATCTTCAGA  98
      |||||||||||||||||||||| |||| ||||||||||||||||||||||
seq2  CCAGATCCAGGCGTCCAGCATCATGTCAAAGGGGGCCACTGATCTTCAGA  100

seq1  GTGTAAGGACAGAGTGACAGGGCAGGACCTTTTCCACTTCTCTCCACCTA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAAGGACAGAGTGACAGGGCAGGACCTTTTCCACTTCTCTCCACCTA  150

seq1  TGGGGCCAGCCTCAGGATAGGCCCAGAGTTAACACACTGGAGTTGGCTGG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCCAGCCTCAGGATAGGCCCAGAGTTAACACACTGGAGTTGGCTGG  200

seq1  ACCAGGGCTGCAAGCTGAACAGGAGCTCAGGGAAGAGAAGTGGAGAGGAG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGGCTGCAAGCTGAACAGGAGCTCAGGGAAGAGAAGTGGAGAGGAG  250

seq1  CTGGCCTTGCTTGAGTTTGAGGAACTGGGAGGTGGGAGGTTAGAAGACGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCTTGCTTGAGTTTGAGGAACTGGGAGGTGGGAGGTTAGAAGACGT  300

seq1  TGATTTACCAGCCTCGTAGGTTGGATGGAGGAGAGCACTGTGGAAGTCCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTACCAGCCTCGTAGGTTGGATGGAGGAGAGCACTGTGGAAGTCCC  350

seq1  TCTGCTTGGCTGTGCTTAAATAGTGGATAGAGCAGGGCGTGGTGACACAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTGGCTGTGCTTAAATAGTGGATAGAGCAGGGCGTGGTGACACAG  400

seq1  CCTTTAATCCCATCAGGGAGGAGGCAAATCTCTGTGAGTTCAAAGCTAGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAATCCCATCAGGGAGGAGGCAAATCTCTGTGAGTTCAAAGCTAGT  450

seq1  ATGATCTAATTAGTGAGATCCAATCCAGACCAGAGCCTGGATTAAATGAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCTAATTAGTGAGATCCAATCCAGACCAGAGCCTGGATTAAATGAA  500

seq1  AAAACAAAAACAAAAACAAACAAACAAACAAACAAAAAACCCCAGGTGGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAAACAAAAACAAACAAACAAACAAACAAAAAACCCCAGGTGGT  550

seq1  GGTATCACAAGTCTTTTTATTTTTATCTTTTTAAAGATTTATAGGCCGGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCACAAGTCTTTTTATTTTTATCTTTTTAAAGATTTATAGGCCGGA  600

seq1  AGTGGTGCCACATGCCTTTAATTCCAGCTCTTGGGATGCAGAGGCAAGAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTGCCACATGCCTTTAATTCCAGCTCTTGGGATGCAGAGGCAAGAG  650

seq1  GATTTCTGAGTTCAAGGCTAGCCTGGTCTAC-TGAGTGAATTC  690
      ||||||||||||||||||||||||||||||| |||||||||||
seq2  GATTTCTGAGTTCAAGGCTAGCCTGGTCTACATGAGTGAATTC  693