BAC Information

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BAC

Clone NameB6Ng01-078C12
Chromosome11 (Build37)
Map Location 90,173,998 - 90,329,347
singlet/doubletdoublet
Overlap geneHlf
Upstream gene4932411E22Rik, Ankfn1, Pctp, Tmem100, LOC100039104, Mmd
Downstream geneStxbp4, LOC100039267, Cox11, Tom1l1, LOC638903, EG664976
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078C12.bB6Ng01-078C12.g
ACCDH893935DH893936
length908906
definitionDH893935|Mus musculus domesticus DNA, BAC clone: B6Ng01-078C12, 5' end.DH893936|Mus musculus domesticus DNA, BAC clone: B6Ng01-078C12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,173,998 - 90,174,916)(90,328,446 - 90,329,347)
sequence
gaattcagaactaaatatttggcttttgaaaccatttggtgtctgctagg
atgactcggtaggcacgtgggcttgcctctaagtctcaggtcctgagttc
gatcctcaggccccacgtggtaggctgagagaactgacaggttactctcc
ggcttacagatgtgaggtcagactgagtgtgagggggataagatccctgc
agtcaggccctgatcggacggacgaggtgtgaggtagcagggaagaccat
agaaatgccattgaacggttgctgaaggggcaggcagtgagcagagccac
tgagagccatgcagtcaggcaagataaagcatccttcttttaagtttgtt
ttgtgaggtaggtcggggttatgacgggagtagaggacttgtgttgcatg
cacaaggccctaaattcaatccccagtactccaaggaaaggacgtcaatg
cgttattaattttaggttattaattttaggtactttgctacaacagtgac
aaaagtaactaacacggtagctttcaggtggacataaacacaacatttta
ctgccttggcctcctaagtgctggaattagaggcacatatctctgcaccc
ggctttcagtatgttttttttttaatttgtcattaaattttggatgttgc
tctatgactgagacacacctttaggtctccattagaatttcttcaaagtt
tccttttgtcctcccctctccttttagatacatcattattcatatatgta
aatgtgtatgtatatatatatatatatatatatatacacacacacataca
tatatatgtatatctcctcacctctccttttagatatatcattattcata
tatatatttatatatatacatacacacacatatatgtatgtatttatgta
tgtattat
gaattctctgatggcagagtggtgagagggtgtgatatggtgtgggttag
gataagcagaacatagcttcctggtgggcaatggaatgcagagagtgaga
atggcttggaataagcttagagaaagccccagagttcatcctcaggtgac
cttgacactttagagaagcttaggcacgatcctaaaaatatgggtaaggc
agggaaggactttaagctgagcaccattgttggttttaggtgtctctttc
cctgcattgagaaaaagaaaactggtaaaaaaaaaaaaaaaaaaaaaaaa
aaaaacatctttctggatgtctgtagaggtggttctagaaggttggcatt
caaatgactagactgaataaaggatgctcagcttcaccattgtgatgggc
atcgttctatacctgagggcctaggttcactcgggggagaagggagaatt
ccctgtcttttggagctggcatacttatcttctgtccttagacatcaggc
gtggggttcatcagaccttggcctcaaatgaagcctcacagcagggccat
cccatgctaaggttttcagacctcctcctcatcctcagagtctcgccatt
ggcttcctgattctcaggactgcaaatttggactgaattacactctggct
tgtagatagcatattgtgggagtaccttaacctacaaagccatcttgagc
catcacgtatgtctatctctctgtctatctgtctatcatcagtcatctag
ctatatatattttagcctaccctgtgtataattattttagatatagatcc
acgttgtctaatgtctattttctatctctgtatatgtagataaagaactg
tctttattttctcaggaaagcccttacttatacactggtaatggcataaa
tatgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_90173998_90174916
seq2: B6Ng01-078C12.b_41_948

seq1  GAATTCAGAACTAAATATTTGGCTTTTGAAACCATTTGGTGTCTGCTAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAACTAAATATTTGGCTTTTGAAACCATTTGGTGTCTGCTAGG  50

seq1  ATGACTCGGTAGGCACGTGGGCTTGCCTCTAAGTCTCAGGTCCTGAGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTCGGTAGGCACGTGGGCTTGCCTCTAAGTCTCAGGTCCTGAGTTC  100

seq1  GATCCTCAGGCCCCACGTGGTAGGCTGAGAGAACTGACAGGTTACTCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTCAGGCCCCACGTGGTAGGCTGAGAGAACTGACAGGTTACTCTCC  150

seq1  GGCTTACAGATGTGAGGTCAGACTGAGTGTGAGGGGGATAAGATCCCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTACAGATGTGAGGTCAGACTGAGTGTGAGGGGGATAAGATCCCTGC  200

seq1  AGTCAGGCCCTGATCGGACGGACGAGGTGTGAGGTAGCAGGGAAGACCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGGCCCTGATCGGACGGACGAGGTGTGAGGTAGCAGGGAAGACCAT  250

seq1  AGAAATGCCATTGAACGGTTGCTGAAGGGGCAGGCAGTGAGCAGAGCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGCCATTGAACGGTTGCTGAAGGGGCAGGCAGTGAGCAGAGCCAC  300

seq1  TGAGAGCCATGCAGTCAGGCAAGATAAAGCATCCTTCTTTTAAGTTTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGCCATGCAGTCAGGCAAGATAAAGCATCCTTCTTTTAAGTTTGTT  350

seq1  TTGTGAGGTAGGTCGGGGTTATGACGGGAGTAGAGGACTTGTGTTGCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGGTAGGTCGGGGTTATGACGGGAGTAGAGGACTTGTGTTGCATG  400

seq1  CACAAGGCCCTAAATTCAATCCCCAGTACTCCAAGGAAAGGACGTCAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGGCCCTAAATTCAATCCCCAGTACTCCAAGGAAAGGACGTCAATG  450

seq1  CGTTATTAATTTTAGGTTATTAATTTTAGGTACTTTGCTACAACAGTGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTATTAATTTTAGGTTATTAATTTTAGGTACTTTGCTACAACAGTGAC  500

seq1  AAAAGTAACTAACACGGTAGCTTTCAGGTGGACATAAACACAACATTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTAACTAACACGGTAGCTTTCAGGTGGACATAAACACAACATTTTA  550

seq1  CTGCCTTGGCCTCCTAAGTGCTGGAATTAGAGGCACATATCTCTGCACCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTGGCCTCCTAAGTGCTGGAATTAGAGGCACATATCTCTGCACCC  600

seq1  GGCTTTCAGTATGTTTTTTTTTTAATTTGTCATTAAATTTTGGATGTTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTCAGTATGTTTTTTTTTTAATTTGTCATTAAATTTTGGATGTTGC  650

seq1  TCTATGACTGAGACACACCTTTAGGTCTCCATTAGAATTTCTTCAAAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGACTGAGACACACCTTTAGGTCTCCATTAGAATTTCTTCAAAGTT  700

seq1  TCC-TTTGTCCTCCCCTCTCCTTTTAGATACATCATTATTCATATATGTA  749
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTGTCCTCCCCTCTCCTTTTAGATACATCATTATTCATATATGTA  750

seq1  AATGTGTATGTATATATATATATATATATATATATACACACACACATACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTATGTATATATATATATATATATATATATACACACACACATACA  800

seq1  TATATATGTATATCTCCTCACCTCTCCTTTTAGATATATCATTATTCATA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATGTATATCTCCTCACCTCTCCTTTTAGATATATCATTATTCATA  850

seq1  TATATATTTATATATATACATACACACACATATATGTATGTATGTATGTA  899
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TATATATTTATATATATACATACACACACATATATGTATGTATTTATGTA  900

seq1  TGTATGTATGTATGTATTAT  919
      ||||| |||           
seq2  TGTAT-TAT-----------  908

seq1: chr11_90328446_90329347
seq2: B6Ng01-078C12.g_70_975 (reverse)

seq1  CACATATATTATGCCATTACCCAGTGTATAAGTAAGGGCTTTCCTGAG-A  49
      ||||||| ||||||||||| |||||||||||||||||||||||||||| |
seq2  CACATAT-TTATGCCATTA-CCAGTGTATAAGTAAGGGCTTTCCTGAGAA  48

seq1  AATAAAGCCAGTTCTTTATCTACATATACAGAGATAG-AAATAGACA-TA  97
      ||||||| ||||||||||||||||||||||||||||| ||||||||| ||
seq2  AATAAAGACAGTTCTTTATCTACATATACAGAGATAGAAAATAGACATTA  98

seq1  GAC-ACGT-GATCTATATCTAAAAATAATTATACACTAGGTAGGCTAAAA  145
      ||| |||| ||||||||||| |||||||||||||||  ||||||||||||
seq2  GACAACGTGGATCTATATCT-AAAATAATTATACACAGGGTAGGCTAAAA  147

seq1  TATATATAGCTAGATGACTGATGATAGACAGATAGACAGAGAGATAGACA  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATAGCTAGATGACTGATGATAGACAGATAGACAGAGAGATAGACA  197

seq1  TACGTGATGGCTC-AGATGGCTTTGTAGGTT-AGGTACTCCCACAATATG  243
      ||||||||||||| ||||||||||||||||| ||||||||||||||||||
seq2  TACGTGATGGCTCAAGATGGCTTTGTAGGTTAAGGTACTCCCACAATATG  247

seq1  CTATCTACAAGCCAGAGTGTAATTCAGTCCAAATTTGCAGTCCTGAGAAT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTACAAGCCAGAGTGTAATTCAGTCCAAATTTGCAGTCCTGAGAAT  297

seq1  CAGGAAGCCAATGGCGAGACTCTGAGGATGAGGAGGAGGTCTGACAACCT  343
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CAGGAAGCCAATGGCGAGACTCTGAGGATGAGGAGGAGGTCTGAAAACCT  347

seq1  TAGCATGGGATGGCCCTGCTGTGAGGCTTCATCTGAGGCCAAGGTCTGAT  393
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TAGCATGGGATGGCCCTGCTGTGAGGCTTCATTTGAGGCCAAGGTCTGAT  397

seq1  GAACCCCACGCCTGATGTCTAAGGACAGAAGATAAGTATGCCAGCTCCAA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCCACGCCTGATGTCTAAGGACAGAAGATAAGTATGCCAGCTCCAA  447

seq1  AAGACAGGGAATTCTCCCTTCTCCCCCGAGTGAACCTAGGCCCTCAGGTA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGGGAATTCTCCCTTCTCCCCCGAGTGAACCTAGGCCCTCAGGTA  497

seq1  TAGAACGATGCCCATCACATTGGTGAAGCTGAGCATCCTTTATTCAGTCT  543
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TAGAACGATGCCCATCACAATGGTGAAGCTGAGCATCCTTTATTCAGTCT  547

seq1  AGTCATTTGAATGCCAACCTTCTAGAACCACCTCTACAGACATCCAGAAA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATTTGAATGCCAACCTTCTAGAACCACCTCTACAGACATCCAGAAA  597

seq1  GATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACCAGTTTTCTTTTTCT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACCAGTTTTCTTTTTCT  647

seq1  CAATGCAGGGAAAGAGACACCTAAAACCAACAATGGTGCTCAGCTTAAAG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCAGGGAAAGAGACACCTAAAACCAACAATGGTGCTCAGCTTAAAG  697

seq1  TCCTTCCCTGCCTTACCCATATTTTTAGGATCGTGCCTAAGCTTCTCTAA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCCTGCCTTACCCATATTTTTAGGATCGTGCCTAAGCTTCTCTAA  747

seq1  AGTGTCAAGGTCACCTGAGGATGAACTCTGGGGCTTTCTCTAAGCTTATT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCAAGGTCACCTGAGGATGAACTCTGGGGCTTTCTCTAAGCTTATT  797

seq1  CCAAGCCATTCTCACTCTCTGCATTCCATTGCCCACCAGGAAGCTATGTT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCCATTCTCACTCTCTGCATTCCATTGCCCACCAGGAAGCTATGTT  847

seq1  CTGCTTATCCTAACCCACACCATATCACACCCTCTCACCACTCTGCCATC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTATCCTAACCCACACCATATCACACCCTCTCACCACTCTGCCATC  897

seq1  AGAGAATTC  902
      |||||||||
seq2  AGAGAATTC  906