BAC Information

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BAC

Clone NameB6Ng01-078J12
Chromosome11 (Build37)
Map Location 63,818,289 - 63,948,526
singlet/doubletdoublet
Overlap geneCox10, 2810001G20Rik
Upstream geneTekt3, Pmp22, LOC433423, LOC100042799, LOC100041690, LOC654442, LOC668297, Hs3st3b1
Downstream geneEG544785, Hs3st3a1, LOC626959, Elac2, AU040829
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078J12.bB6Ng01-078J12.g
ACCDH894247DH894248
length1,2421,062
definitionDH894247|Mus musculus domesticus DNA, BAC clone: B6Ng01-078J12, 5' end.DH894248|Mus musculus domesticus DNA, BAC clone: B6Ng01-078J12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,947,254 - 63,948,526)(63,818,289 - 63,819,384)
sequence
gaattcactacaaaagggaggcccttcccacagttcagtgctctcccaag
ctcactggcattgtctgggtctctacttcctctgcctgggcataggtctc
ccccacggcagcctcctaccccgtgattccaggtggccaatcccttcctt
gtaactcttaaaatgtggttccatgatgataacctgtaagaagcaaagaa
gggctacacctttagaaccttctttcctttgcacataggatgatgtcaac
actttgccacgaccctcaagtcttgcctgttcccccaaccccattctgct
cggcaggtcttggagagtctgtcttcttttcaatctagtcttcaggttct
ttgtcatctatcttaatgtgctatagggctttgctcattcccttccctct
gccctgaatgctccttgcctagccctccccacccttgctgttcctcagcc
tcagatctagaggtctatgctcatttgcatcatccctgatagagcaaaca
tccccactgccctcctcacatgcactggccaggcgtgtcccaatgtggac
tgtgcctcaggcatttctgaccattggcacccagtctgcccagaaataga
ccaacatgaacgcaccagtgaattcatgaccccaggagcagcttcagtca
acacgtggcacctcgtccatcagcagtaactgtggccctgagggtttaag
ctccagttacctatggggaaattgcctggcagcctattctttcttgtctt
tctgtagtgtcagcaatctctgaatgaatttcctggtgtgtatctgctta
tttaagtgggcacctctatgcagcaaattggcttcatgaaaggagttttt
ctctgaatccaaactgtgcatggaacacagtacgtattcaagaaatattt
gttgagaactgcacaagctccccattggcaacctactcttttggtttatc
aagagcattcccagttcgaggcttagtaggctagcagtatcctccggcac
tttgctaatggagccagagcttgttccttggcggaccagacatgatcttc
agtgccctggatgtcacagtgcccagatgaaaccagccctgcttctacga
tctgcagtaatcctgcccaggacggagcactcatttggcagcaaatgtcc
gatcttgagacatgtattattggaagctggtgctagccagtttactttct
tcttcatgaaatctggttcaggacggcttctcatgtacatca
gaattctaggtcagcctggtctacaaagtgagttccaggacagccagagc
tacacagaaaaagtatctttaaaaactgaaaacaaaacaaaatcaaacaa
ccccaaagcaaagcaaacaacaacaaaaaccaagataaaattcacaatta
gttttacagtgactctttaactttaacaaccaaccaaccaaccaaactaa
ctagccaactaactagccaactaactgattggtatagtaggagtttattc
ttaattttctgctaaataaaaatttaaaaatccgatacatttttaaggtt
tattagttttgtatgtgtatggatgcgttgcccacatatgtgtagctgcc
cacagagggcagaagagggcgtcagatcccggggaactggagttagagcc
aactgtagggccgggaactgaacccacgtcctcttcactactcattacct
ttccaggtcccaggctaacttgttaaaacacccacaaagtaactgatgtg
tgacaacagtttttattagtgtgactcaggagagcttaaatgggttccat
ttggtcatcaaatcccaatattaagagaatcacaagcttcatatatctat
gtcacttatctgacataattctttttgtttattggatattttcttttttt
tttaaagatttatttatttattgtatgtaagtacactatagttgtcttca
gacacaccagaagagggtgccagatttcattacggatggttgtgaaccac
catgtggttgctgggatttgaactcaggacctctggaagagtagtcagtg
ctcttaaccgctgagccatctctccagccctggatattttctttatttac
atttcaaatgttatcacctttcctgtttctcccctccaggaaacacctgt
cccatcttccctcccctgcatctatgaggttttcttcaccacccacactc
tccactcccacccttactccctacactgggcatctatcgagcttcataga
cagacctcccctccatgatgcatcgaatatctttttttttttttaagtat
tatttttattat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_63947254_63948526
seq2: B6Ng01-078J12.b_45_1286 (reverse)

seq1  TGATGTACATGAGAAAGACTGTCACTGGACACAAGGTATTTTTCATGTGA  50
      |||||||||||||||   | ||| ||| ||       |  |||||||   
seq2  TGATGTACATGAGAA--GCCGTC-CTGAAC------CAGATTTCATG---  38

seq1  CAGAAAGAAAAGTTAAAACTGGGCTAAGCACCCAGGCTTTCAATAATTAC  100
       ||||   |||||  ||||| |||| ||||||   |||| |||||| |||
seq2  AAGAA--GAAAGT--AAACT-GGCT-AGCACC--AGCTTCCAATAA-TAC  79

seq1  ATTGTCTCAAGAATTCCGACATATGCTGCCAGATGAGTGCTCCGTCCTGT  150
      | ||||||||||  || ||||| |||||||| ||||||||||||||||| 
seq2  A-TGTCTCAAGA--TCGGACATTTGCTGCCAAATGAGTGCTCCGTCCTGG  126

seq1  GCAGGATCTACCTGCAGATCTGTATGAGCAGGGCTGGTATCATCTGGGCA  200
      ||||||| || ||||||||| |||  |||||||||||| |||||||||||
seq2  GCAGGAT-TA-CTGCAGATC-GTAGAAGCAGGGCTGGTTTCATCTGGGCA  173

seq1  CTGTGACATCCAGGGCACTGGAGATCATGTTCTGGTTCCGCCAAGGAACA  250
      |||||||||||||||||||| |||||||| ||||| ||||||||||||||
seq2  CTGTGACATCCAGGGCACTGAAGATCATG-TCTGG-TCCGCCAAGGAACA  221

seq1  AGCTTCTGGCTCCATTAGCAGAGTGCCGGAGGATACTTGCTAGCCTACTA  300
      ||| |||||||||||||||| ||||||||||||||| |||||||||||||
seq2  AGC-TCTGGCTCCATTAGCAAAGTGCCGGAGGATAC-TGCTAGCCTACTA  269

seq1  AGCCTCGAACTGGGAATGCTCTTGATAAACCAAAAGAGTAGGTTGCCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCGAACTGGGAATGCTCTTGATAAACCAAAAGAGTAGGTTGCCAAT  319

seq1  GGGGAGCTTGTGCAGTTCTCAACAAATATTTCTTGAATACCTACTGTGTT  400
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GGGGAGCTTGTGCAGTTCTCAACAAATATTTCTTGAATACGTACTGTGTT  369

seq1  CCATGCACAGTTTGGATTCAGAGAAAAACTCCTTTCATGAAGCCAATTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCACAGTTTGGATTCAGAGAAAAACTCCTTTCATGAAGCCAATTTG  419

seq1  CTGCATAGAGGTGCCCACTTAAATAAGCAGATACACACCAGGAAATTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATAGAGGTGCCCACTTAAATAAGCAGATACACACCAGGAAATTCAT  469

seq1  TCAGAGATTGCTGACACTACAGAAAGACAAGAAAGAATAGGCTGCCAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGATTGCTGACACTACAGAAAGACAAGAAAGAATAGGCTGCCAGGC  519

seq1  AATTTCCCCATAGGTAACTGGAGCTTAAACCCTCAGGGCCACAGTTACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCCCCATAGGTAACTGGAGCTTAAACCCTCAGGGCCACAGTTACTG  569

seq1  CTGATGGACGAGGTGCCACGTGTTGACTGAAGCTGCTCCTGGGGTCATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGGACGAGGTGCCACGTGTTGACTGAAGCTGCTCCTGGGGTCATGA  619

seq1  ATTCACTGGTGCGTTCATGTTGGTCTATTTCTGGGCAGACTGGGTGCCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACTGGTGCGTTCATGTTGGTCTATTTCTGGGCAGACTGGGTGCCAA  669

seq1  TGGTCAGAAATGCCTGAGGCACAGTCCACATTGGGACACGCCTGGCCAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAGAAATGCCTGAGGCACAGTCCACATTGGGACACGCCTGGCCAGT  719

seq1  GCATGTGAGGAGGGCAGTGGGGATGTTTGCTCTATCAGGGATGATGCAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTGAGGAGGGCAGTGGGGATGTTTGCTCTATCAGGGATGATGCAAA  769

seq1  TGAGCATAGACCTCTAGATCTGAGGCTGAGGAACAGCAAGGGTGGGGAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCATAGACCTCTAGATCTGAGGCTGAGGAACAGCAAGGGTGGGGAGG  819

seq1  GCTAGGCAAGGAGCATTCAGGGCAGAGGGAAGGGAATGAGCAAAGCCCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGCAAGGAGCATTCAGGGCAGAGGGAAGGGAATGAGCAAAGCCCTA  869

seq1  TAGCACATTAAGATAGATGACAAAGAACCTGAAGACTAGATTGAAAAGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACATTAAGATAGATGACAAAGAACCTGAAGACTAGATTGAAAAGAA  919

seq1  GACAGACTCTCCAAGACCTGCCGAGCAGAATGGGGTTGGGGGAACAGGCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGACTCTCCAAGACCTGCCGAGCAGAATGGGGTTGGGGGAACAGGCA  969

seq1  AGACTTGAGGGTCGTGGCAAAGTGTTGACATCATCCTATGTGCAAAGGAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTGAGGGTCGTGGCAAAGTGTTGACATCATCCTATGTGCAAAGGAA  1019

seq1  AGAAGGTTCTAAAGGTGTAGCCCTTCTTTGCTTCTTACAGGTTATCATCA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGTTCTAAAGGTGTAGCCCTTCTTTGCTTCTTACAGGTTATCATCA  1069

seq1  TGGAACCACATTTTAAGAGTTACAAGGAAGGGATTGGCCACCTGGAATCA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACCACATTTTAAGAGTTACAAGGAAGGGATTGGCCACCTGGAATCA  1119

seq1  CGGGGTAGGAGGCTGCCGTGGGGGAGACCTATGCCCAGGCAGAGGAAGTA  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGTAGGAGGCTGCCGTGGGGGAGACCTATGCCCAGGCAGAGGAAGTA  1169

seq1  GAGACCCAGACAATGCCAGTGAGCTTGGGAGAGCACTGAACTGTGGGAAG  1250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCCAGACAATGCCAGTGAGCTTGGGAGAGCACTGAACTGTGGGAAG  1219

seq1  GGCCTCCCTTTTGTAGTGAATTC  1273
      |||||||||||||||||||||||
seq2  GGCCTCCCTTTTGTAGTGAATTC  1242

seq1: chr11_63818289_63819384
seq2: B6Ng01-078J12.g_67_1128

seq1  GAATTCTAGGTCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGTCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGAGC  50

seq1  TACACAGAAAAAGTATCTTTAAAAACTGAAAACAAAACAAAATCAAACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGAAAAAGTATCTTTAAAAACTGAAAACAAAACAAAATCAAACAA  100

seq1  CCCCAAAGCAAAGCAAACAACAACAAAAACCAAGATAAAATTCACAATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAAGCAAAGCAAACAACAACAAAAACCAAGATAAAATTCACAATTA  150

seq1  GTTTTACAGTGACTCTTTAACTTTAACAACCAACCAACCAACCAAACTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTACAGTGACTCTTTAACTTTAACAACCAACCAACCAACCAAACTAA  200

seq1  CTAGCCAACTAACTAGCCAACTAACTGATTGGTATAGTAGGAGTTTATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCAACTAACTAGCCAACTAACTGATTGGTATAGTAGGAGTTTATTC  250

seq1  TTAATTTTCTGCTAAATAAAAATTTAAAAATCCGATACATTTTTAAGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTCTGCTAAATAAAAATTTAAAAATCCGATACATTTTTAAGGTT  300

seq1  TATTAGTTTTGTATGTGTATGGATGCGTTGCCCACATATGTGTAGCTGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGTTTTGTATGTGTATGGATGCGTTGCCCACATATGTGTAGCTGCC  350

seq1  CACAGAGGGCAGAAGAGGGCGTCAGATCCCGGGGAACTGGAGTTAGAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGGGCAGAAGAGGGCGTCAGATCCCGGGGAACTGGAGTTAGAGCC  400

seq1  AACTGTAGGGCCGGGAACTGAACCCACGTCCTCTTCACTACTCATTACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTAGGGCCGGGAACTGAACCCACGTCCTCTTCACTACTCATTACCT  450

seq1  TTCCAGGTCCCAGGCTAACTTGTTAAAACACCCACAAAGTAACTGATGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGTCCCAGGCTAACTTGTTAAAACACCCACAAAGTAACTGATGTG  500

seq1  TGACAACAGTTTTTATTAGTGTGACTCAGGAGAGCTTAAATGGGTTCCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAACAGTTTTTATTAGTGTGACTCAGGAGAGCTTAAATGGGTTCCAT  550

seq1  TTGGTCATCAAATCCCAATATTAAGAGAATCACAAGCTTCATATATCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCATCAAATCCCAATATTAAGAGAATCACAAGCTTCATATATCTAT  600

seq1  GTCACTTATCTGACATAATTCTTTTTGTTTATTGGATATTTTCTTTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTTATCTGACATAATTCTTTTTGTTTATTGGATATTTTCTTTTTTT  650

seq1  TTTAAAGATTTATTTATTTATTGTATGTAAGTACACTATAGTTGTCTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGATTTATTTATTTATTGTATGTAAGTACACTATAGTTGTCTTCA  700

seq1  GACACACCAGAAGAGGGTGCCAGATTTCATTACGGATGGTTGTGAACCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACACCAGAAGAGGGTGCCAGATTTCATTACGGATGGTTGTGAACCAC  750

seq1  CATGTGGTTGCTGGGATTTGAACTCAGGACCTCTGGAAGAGTAGTCAGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGGTTGCTGGGATTTGAACTCAGGACCTCTGGAAGAGTAGTCAGTG  800

seq1  CTCTTAACCGCTGAGCCATCTCTCCAGCCCTGGATATTTTCTTTATTTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAACCGCTGAGCCATCTCTCCAGCCCTGGATATTTTCTTTATTTAC  850

seq1  ATTTCAAATGTTATCACCTTTCCTGTTTCTCCCCCTCCAGGAAACACCCT  900
      |||||||||||||||||||||||||||||| ||||||||||||||| |||
seq2  ATTTCAAATGTTATCACCTTTCCTGTTTCT-CCCCTCCAGGAAACA-CCT  898

seq1  GTCCCATCTTCCCTCCCCCTGCATCTATGAGGGTTTTCTTCCACCCACCC  950
      |||||||||||||| ||||||||||||||| ||||||||||   ||||||
seq2  GTCCCATCTTCCCT-CCCCTGCATCTATGA-GGTTTTCTTC--ACCACCC  944

seq1  ACACTCTCCCACCTCCCCACCCTTAACTCCCCTACACTGGGGCATCTATC  1000
      ||||||| ||||   ||||||||| ||| ||||||||| |||||||||||
seq2  ACACTCT-CCAC--TCCCACCCTT-ACT-CCCTACACT-GGGCATCTATC  988

seq1  GAGCCTTCATAGGACCAAGGACCTCCCCTCCCATTGATGCAATTCGACAT  1050
      ||| ||||||||    |  ||||||||||||   |||||||  |||| ||
seq2  GAG-CTTCATAG----ACAGACCTCCCCTCC--ATGATGCA--TCGA-AT  1028

seq1  AATTCTTTTTTTTTTTTTTTTAAAGGTTTATTTATTTTTTTATTAT  1096
      |  |||||||||||||||    |||  |||      ||||||||||
seq2  A--TCTTTTTTTTTTTTT----AAGTATTA------TTTTTATTAT  1062