BAC Information

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BAC

Clone NameB6Ng01-079B02
Chromosome11 (Build37)
Map Location 115,557,283 - 115,689,136
singlet/doubletdoublet
Overlap geneGrb2, LOC100043184, 2310067B10Rik, Caskin2, Tsen54, Llgl2
Upstream geneTtyh2, Dnaic2, Kif19a, 1500005I02Rik, Gpr142, Gprc5c, Cd300a, Cd300lb, Cd300c, 4732429D16Rik, Cd300d, LOC629970, LOC100043123, LOC100043125, Clm3, Cd300e, Cd300lf, Rab37, Slc9a3r1, Nat9, Tmem104, Grin2c, Fdxr, Fads6, Otop2, Ush1g, Otop3, C630004H02Rik, Cdr2l, Ict1, Atp5h, Kctd2, 4933422H20Rik, Slc16a5, Armc7, Nt5c, Hn1, Sumo2, Nup85, Gga3, Mrps7, Mif4gd, Slc25a19
Downstream geneRecql5, 2210020M01Rik, Sap30bp, Itgb4, Galk1, H3f3b, Unk, Unc13d, Wbp2, Trim47, Trim65, Mrpl38, Fbf1, Acox1, 2310004N24Rik, Cdk3, Evpl, Srp68, Galr2, Exoc7, Foxj1, LOC668255, 1110014K08Rik, Qrich2, Prpsap1, LOC629971, Sphk1, Ube2o, Aanat, Rhbdf2, Cygb, OTTMUSG00000003947, 1810032O08Rik, St6galnac2, LOC634720, BC018473, St6galnac1, Mxra7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079B02.bB6Ng01-079B02.g
ACCDH894585DH894586
length7081,162
definitionDH894585|Mus musculus domesticus DNA, BAC clone: B6Ng01-079B02, 5' end.DH894586|Mus musculus domesticus DNA, BAC clone: B6Ng01-079B02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,688,429 - 115,689,136)(115,557,283 - 115,558,467)
sequence
gaattcttcgtggttcctgggaagggcaagtgactcttcaagggaccagt
tttctctgagtcagggcagacggagaaagccatctcaaagaaactgggca
cagctacggatcagagactggcgagggcaggtagtacagtggctgatggg
caacacccatctcctctcctatcccctgcctaaactctacctgggcagag
gaaaacaaaagttgccaagcagacctggcatgcccgggctcaggaggagg
gagagagcagtatcactgagggagataagagggcctcccagaaccagagc
ggggcgagctgccagtgctgctcagaggagccaccttgcagaggcagagt
cagcttctccagcctcccgtggtacccagctcaggagtctcagcagctgc
tcctggttgccttagaaaactaggaagctagggctccccacaaggtcgga
gggtctgtctgtcagacctagtcaggttcttctccaggataccaagtggc
taccagccgaaggcaaagactccaaatttcccctatactcctttttctcc
cagggaaggcaggagtggggagaaagggagagagagatgtttttataagt
gtgattgcgcttatttgaggaagggcagagctgtagagcaatgtctcact
cccctgccctacccctagacggagtgtagagtgaatggagaagcctgggt
ggagaaca
gaattcacaggggtctgtggacttaaaacgacccttggatccctagcagc
agtacttgaggcacatactcatacatcccaacatggcagttttatgtggg
ccaaggctaaactacaatacaaagagttcttcacatgccgtactttacca
ctgagttacagccccaatctcttcctcagggcccattccaagcctctgca
tgaggatgggaaacttaagcacactcagtgcaaaagcgtgaagcttgcag
gaacagccctttcacttaaagccccagccaccctgctctgcaagcaaaac
ataagcttacataaaagaacaagaaaggcgggtgaatttaaaaccaggct
gggcaacagatataatctcaaaacagaacaagcaaagacaaaaagtaaaa
caacaggaaaagaagagagaggacaagtgtctccctatgtcaatcaaagt
ttaaggatccatgccactccagccacttttcaatgtgtcacaagagctat
caaatgtcagagcagtgctgcagctggcttactccccacagaaaggagaa
aactctgttttaccaacaactcttcgcagagaatctccctcctcttcacg
aagctgtctcagaactatgagacaaagggcaagcactgtatcaacacaca
cattcatattcattcttgcgctctcattttttggagtacagccacaagat
tactaacaaacagctaatggccactgttcaaaagcaatactggcattatg
acttcatatcccagttatctaccaaattggaaagactcaagtgtatgagt
ttctctccccaaacagaatgtgaaagtaaaacatgaatcttctgattcac
ctttcttcatcataatactcccgggagaattatcaacaacttgtcaatca
attatggtctaggtctaggacaaacttaagacagtcatcagggagtgctg
ttgcttagagtccctggttttgttttattgtgatccagtgttaacaggca
atagatacactagagatatgactgcagccctgcagtcagttctgagttta
atggtgctttatgattaaacaaacaaatagggccaggcatggttgcctca
cctatatcttagactatatagtgaggtcggaacagtctggcttacagaga
ggaacctgtttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_115688429_115689136
seq2: B6Ng01-079B02.b_43_750 (reverse)

seq1  TGTTCTCCACCCAGGCTTACTCCATTCACTCTACACTCCGTCTAGGGGTA  50
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TGTTCTCCACCCAGGCTT-CTCCATTCACTCTACACTCCGTCTAGGGGTA  49

seq1  GGGCAGGGGAGTGAGACATTGCTCTACAGCTCTGCCCTTCCTCAAATAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGGGGAGTGAGACATTGCTCTACAGCTCTGCCCTTCCTCAAATAAG  99

seq1  CGCAATCACACTTAT-TAAACATCTCTCTCTCCCTTTCTCCCCACTCCTG  149
      |||||||||||||||  |||||||||||||||||||||||||||||||||
seq2  CGCAATCACACTTATAAAAACATCTCTCTCTCCCTTTCTCCCCACTCCTG  149

seq1  CCTTCCCTGGGAGAAAAAGGAGTATAGGGGAAATTTGGAGTCTTTGCCTT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCTGGGAGAAAAAGGAGTATAGGGGAAATTTGGAGTCTTTGCCTT  199

seq1  CGGCTGGTAGCCACTTGGTATCCTGGAGAAGAACCTGACTAGGTCTGACA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTGGTAGCCACTTGGTATCCTGGAGAAGAACCTGACTAGGTCTGACA  249

seq1  GACAGACCCTCCGACCTTGTGGGGAGCCCTAGCTTCCTAGTTTTCTAAGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGACCCTCCGACCTTGTGGGGAGCCCTAGCTTCCTAGTTTTCTAAGG  299

seq1  CAACCAGGAGCAGCTGCTGAGACTCCTGAGCTGGGTACCACGGGAGGCTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAGGAGCAGCTGCTGAGACTCCTGAGCTGGGTACCACGGGAGGCTG  349

seq1  GAGAAGCTGACTCTGCCTCTGCAAGGTGGCTCCTCTGAGCAGCACTGGCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCTGACTCTGCCTCTGCAAGGTGGCTCCTCTGAGCAGCACTGGCA  399

seq1  GCTCGCCCCGCTCTGGTTCTGGGAGGCCCTCTTATCTCCCTCAGTGATAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGCCCCGCTCTGGTTCTGGGAGGCCCTCTTATCTCCCTCAGTGATAC  449

seq1  TGCTCTCTCCCTCCTCCTGAGCCCGGGCATGCCAGGTCTGCTTGGCAACT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTCTCCCTCCTCCTGAGCCCGGGCATGCCAGGTCTGCTTGGCAACT  499

seq1  TTTGTTTTCCTCTGCCCAGGTAGAGTTTAGGCAGGGGATAGGAGAGGAGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTCCTCTGCCCAGGTAGAGTTTAGGCAGGGGATAGGAGAGGAGA  549

seq1  TGGGTGTTGCCCATCAGCCACTGTACTACCTGCCCTCGCCAGTCTCTGAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGTTGCCCATCAGCCACTGTACTACCTGCCCTCGCCAGTCTCTGAT  599

seq1  CCGTAGCTGTGCCCAGTTTCTTTGAGATGGCTTTCTCCGTCTGCCCTGAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTAGCTGTGCCCAGTTTCTTTGAGATGGCTTTCTCCGTCTGCCCTGAC  649

seq1  TCAGAGAAAACTGGTCCCTTGAAGAGTCACTTGCCCTTCCCAGGAACCAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGAAAACTGGTCCCTTGAAGAGTCACTTGCCCTTCCCAGGAACCAC  699

seq1  GAAGAATTC  708
      |||||||||
seq2  GAAGAATTC  708

seq1: chr11_115557283_115558467
seq2: B6Ng01-079B02.g_70_1231

seq1  GAATTCACAGGGGTCTGTGGACTTAAAACGACCCTTGGATCCCTAGCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGGGGTCTGTGGACTTAAAACGACCCTTGGATCCCTAGCAGC  50

seq1  AGTACTTGAGGCACATACTCATACATCCCAACATGGCAGTTTTATGTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTTGAGGCACATACTCATACATCCCAACATGGCAGTTTTATGTGGG  100

seq1  CCAAGGCTAAACTACAATACAAAGAGTTCTTCACATGCCGTACTTTACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGCTAAACTACAATACAAAGAGTTCTTCACATGCCGTACTTTACCA  150

seq1  CTGAGTTACAGCCCCAATCTCTTCCTCAGGGCCCATTCCAAGCCTCTGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTACAGCCCCAATCTCTTCCTCAGGGCCCATTCCAAGCCTCTGCA  200

seq1  TGAGGATGGGAAACTTAAGCACACTCAGTGCAAAAGCGTGAAGCTTGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGATGGGAAACTTAAGCACACTCAGTGCAAAAGCGTGAAGCTTGCAG  250

seq1  GAACAGCCCTTTCACTTAAAGCCCCAGCCACCCTGCTCTGCAAGCAAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGCCCTTTCACTTAAAGCCCCAGCCACCCTGCTCTGCAAGCAAAAC  300

seq1  ATAAGCTTACATAAAAGAACAAGAAAGGCGGGTGAATTTAAAACCAGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCTTACATAAAAGAACAAGAAAGGCGGGTGAATTTAAAACCAGGCT  350

seq1  GGGCAACAGATATAATCTCAAAACAGAACAAGCAAAGACAAAAAGTAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAACAGATATAATCTCAAAACAGAACAAGCAAAGACAAAAAGTAAAA  400

seq1  CAACAGGAAAAGAAGAGAGAGGACAAGTGTCTCCCTATGTCAATCAAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGGAAAAGAAGAGAGAGGACAAGTGTCTCCCTATGTCAATCAAAGT  450

seq1  TTAAGGATCCATGCCACTCCAGCCACTTTTCAATGTGTCACAAGAGCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGATCCATGCCACTCCAGCCACTTTTCAATGTGTCACAAGAGCTAT  500

seq1  CAAATGTCAGAGCAGTGCTGCAGCTGGCTTACTCCCCACAGAAAGGAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTCAGAGCAGTGCTGCAGCTGGCTTACTCCCCACAGAAAGGAGAA  550

seq1  AACTCTGTTTTACCAACAACTCTTCGCAGAGAATCTCCCTCCTCTTCACG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTGTTTTACCAACAACTCTTCGCAGAGAATCTCCCTCCTCTTCACG  600

seq1  AAGCTGTCTCAGAACTATGAGACAAAGGGCAAGCACTGTATCAACACACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGTCTCAGAACTATGAGACAAAGGGCAAGCACTGTATCAACACACA  650

seq1  CATTCATATTCATTCTTGCGCTCTCATTTTTTGGAGTACAGCCACAAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATATTCATTCTTGCGCTCTCATTTTTTGGAGTACAGCCACAAGAT  700

seq1  TACTAACAAACAGCTAATGGCCACTGTTCAAAAGCAATACTGGCATTATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAACAAACAGCTAATGGCCACTGTTCAAAAGCAATACTGGCATTATG  750

seq1  ACTTCATATCCCAGTTATCTACCAAATTGGAAAGACTCAAGTGTATGAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCATATCCCAGTTATCTACCAAATTGGAAAGACTCAAGTGTATGAGT  800

seq1  TTCTCTCCCCAAACAGAATGTGAAAGTAAAACATGAATCTTCTGATTCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCCCCAAACAGAATGTGAAAGTAAAACATGAATCTTCTGATTCAC  850

seq1  C-TTCTTCATCATAAATACTCCCGGGAGAA-TATCAACAACTTGTCAATC  898
      | ||||||||||| |||||||||||||||| |||||||||||||||||||
seq2  CTTTCTTCATCAT-AATACTCCCGGGAGAATTATCAACAACTTGTCAATC  899

seq1  AATTATGGTCTAGGTCTAGGACAAACTTAAGACAGTCATCAGGGAGTGCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATGGTCTAGGTCTAGGACAAACTTAAGACAGTCATCAGGGAGTGCT  949

seq1  GTTGCTTAGAGTCCCTGGTTTTGTTTTAATTTGTTGATCCAGTGTTAACA  998
      ||||||||||||||||||||||||||||  ||| ||||||||||||||||
seq2  GTTGCTTAGAGTCCCTGGTTTTGTTTTA--TTG-TGATCCAGTGTTAACA  996

seq1  GGCAATAGGATACACTAAGAAGAATATGAACTGCCAGCCCTGCAAGTTCA  1048
      ||||||| |||||||| |||   ||||| |||| ||||||||| |||   
seq2  GGCAATA-GATACACT-AGA--GATATG-ACTG-CAGCCCTGC-AGT--C  1037

seq1  AGTTCCTAGAGGTTAAATGTGGCCTTTATGAATTTAAAACAAACAAAAAT  1098
      |||||   ||| ||||  |||  ||||||||   | ||||||||  ||||
seq2  AGTTC--TGAGTTTAATGGTG--CTTTATGA---TTAAACAAAC--AAAT  1078

seq1  AGTGTCAGGCATGGTGGGCCTCACCTATAATCTTAAGACTATATAGTGAG  1148
      || | ||||||||||  ||||||||||| ||||| |||||||||||||||
seq2  AGGGCCAGGCATGGT-TGCCTCACCTAT-ATCTT-AGACTATATAGTGAG  1125

seq1  TTCTGAGCAGTCCTGGGTTACAGAGA-GACCCTGTTTC  1185
       || || |||| |||| ||||||||| || ||||||||
seq2  GTCGGAACAGT-CTGGCTTACAGAGAGGAACCTGTTTC  1162