BAC Information

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BAC

Clone NameB6Ng01-079C09
Chromosome11 (Build37)
Map Location 47,714,358 - 47,881,155
singlet/doubletdoublet
Overlap genenone
Upstream geneSgcd, LOC628753, LOC100039647
Downstream geneLOC192895, Hn1l-ps2, LOC667163, LOC432554, Gnb2l1, Trim41, LOC100039945, Trim7, Irgm, EG432555, OTTMUSG00000005523, Psme2b-ps, LOC667214, Tgtp, LOC667219, 9930111J21Rik, Olfr56, LOC100039796
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079C09.bB6Ng01-079C09.g
ACCDH894645DH894646
length9291,094
definitionDH894645|Mus musculus domesticus DNA, BAC clone: B6Ng01-079C09, 5' end.DH894646|Mus musculus domesticus DNA, BAC clone: B6Ng01-079C09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,880,451 - 47,881,155)(47,714,358 - 47,715,468)
sequence
gaattctataccatgaaactgtttttcatgcacaaaattattaaaagtat
aatatagaactaccttcagggtaggtgtgtaagaaacaaatgaatttcat
gcttagatttaggtcatatcctcaagacatcttattatataaatattcaa
aaatttgcagacattccccaccctaaatatgaactatgtttgtccccaag
cttttttgataagagacattcatcctatgaattattcatcagcatctgca
ggacaaaggtctggggttcaattactgtgattctccactgaaggtctcag
agggctggaaaagggggttagccagagtgaattgtcaccaatagcatagg
tctcacgctttctcattcacactactgcctgtggttggatgatgcttgct
ggcttgctggctgtcagccaaggacatctcttaactgccagaagttgtca
caatccctttccatgtggcccatgggtggttcacggcacttacgtttgct
tatttctagttttttaaaaaaggtgcatggattatttcttttgtgaccca
ctagagaaatttttcttttaacccactcaggaaatgatcttaaagaccaa
gaggatttccctatagtaagctcaactgatttggaaatttatctgcacct
ggaaaatatctttcagaacaccacctggggtgggggttggggggaggcat
gtttccactaggacactgagatgagcatcctatgagcatgtgttagaaca
aaagttctcaatcttttccactttggggggtcaaacaacccattcacata
gggcacctaagacaatgggaaacacagaaattatatcacaattaataaca
gtagctaattacagttatgaagtagcgccaaaataattttatggttgggg
gtatggagaacacgaggaactgtattaaa
gaattcatgtagcattcctttgtttatgtatataccttccacttgctcag
tggccctgtttaatcatttctcaattctcagcttcttgctcacttcctgg
aacacagtacaacctcagtaaagaaagaccagggtaggttgaaattaaaa
taaaatgtagaaaacaaattcaatctatgtctaaggatggaaaaaatata
tacattgtgtatgtggcattctatcctataatactaaaaatcatcctaag
attgatgttgttattaatgctttatgctcatctttagctgagaaaatcca
ttgtgtgtaatttatatttttattatcttttaatggtattacaatcatta
tttgattttgcattttgctgcaatactaaataccaaatgccctccattgt
taattttttttgcagcaacctccttaatatcctgtcaaataatatcccat
tataatcagaatggtatttctatgcattaacactctcctagaataagtct
agatattcagactctataatcatcacttcaatgactattcttatagataa
gccttcccttaatcccacataattaatttagaatataatccaacatatga
ggaaaatggatccaaaagaataagcttctaaatatgggagatagactttt
tttttcaaaaatgatcttgaatgttctgtgtgcacaggaatgatgcatgt
aagctcaggatacatgataggtactttgtatagagctctttcattgcttc
tctgactttttttgatttgaagtgttttttctattactatcactcctaca
gaaagcttagagccaccaagcattcactgtgcagttggcctcagccattc
ccatacattatcccatttaagattacaagtagctgcttaagagaacagtg
tgcattctaattccaggttgtttatgacacacagagttttatgatggagc
aattgatagagcccttgtctggatatatcaaactgtgatcttgaccatct
attgggtttctttcacagaggctcagttgtgcccctagagtgcaagtaaa
tctacactaatttttttattttaaaataaaacaactttcatttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_47880451_47881155
seq2: B6Ng01-079C09.b_47_751 (reverse)

seq1  GAAACATGCCTCCCCCCAACCCCCACCCCAGGTGGTGTTCTGAAAGATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACATGCCTCCCCCCAACCCCCACCCCAGGTGGTGTTCTGAAAGATAT  50

seq1  TTTCCAGGTGCAGATAAATTTCCAAATCAGTTGAGCTTACTATAGGGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGGTGCAGATAAATTTCCAAATCAGTTGAGCTTACTATAGGGAAA  100

seq1  TCCTCTTGGTCTTTAAGATCATTTCCTGAGTGGGTTAAAAGAAAAATTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTGGTCTTTAAGATCATTTCCTGAGTGGGTTAAAAGAAAAATTTC  150

seq1  TCTAGTGGGTCACAAAAGAAATAATCCATGCACCTTTTTTAAAAAACTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTGGGTCACAAAAGAAATAATCCATGCACCTTTTTTAAAAAACTAG  200

seq1  AAATAAGCAAACGTAAGTGCCGTGAACCACCCATGGGCCACATGGAAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGCAAACGTAAGTGCCGTGAACCACCCATGGGCCACATGGAAAGG  250

seq1  GATTGTGACAACTTCTGGCAGTTAAGAGATGTCCTTGGCTGACAGCCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTGACAACTTCTGGCAGTTAAGAGATGTCCTTGGCTGACAGCCAGC  300

seq1  AAGCCAGCAAGCATCATCCAACCACAGGCAGTAGTGTGAATGAGAAAGCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGCAAGCATCATCCAACCACAGGCAGTAGTGTGAATGAGAAAGCG  350

seq1  TGAGACCTATGCTATTGGTGACAATTCACTCTGGCTAACCCCCTTTTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACCTATGCTATTGGTGACAATTCACTCTGGCTAACCCCCTTTTCCA  400

seq1  GCCCTCTGAGACCTTCAGTGGAGAATCACAGTAATTGAACCCCAGACCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCTGAGACCTTCAGTGGAGAATCACAGTAATTGAACCCCAGACCTT  450

seq1  TGTCCTGCAGATGCTGATGAATAATTCATAGGATGAATGTCTCTTATCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGCAGATGCTGATGAATAATTCATAGGATGAATGTCTCTTATCAA  500

seq1  AAAAGCTTGGGGACAAACATAGTTCATATTTAGGGTGGGGAATGTCTGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTTGGGGACAAACATAGTTCATATTTAGGGTGGGGAATGTCTGCA  550

seq1  AATTTTTGAATATTTATATAATAAGATGTCTTGAGGATATGACCTAAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTGAATATTTATATAATAAGATGTCTTGAGGATATGACCTAAATC  600

seq1  TAAGCATGAAATTCATTTGTTTCTTACACACCTACCCTGAAGGTAGTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCATGAAATTCATTTGTTTCTTACACACCTACCCTGAAGGTAGTTCT  650

seq1  ATATTATACTTTTAATAATTTTGTGCATGAAAAACAGTTTCATGGTATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATACTTTTAATAATTTTGTGCATGAAAAACAGTTTCATGGTATAG  700

seq1  AATTC  705
      |||||
seq2  AATTC  705

seq1: chr11_47714358_47715468
seq2: B6Ng01-079C09.g_69_1162

seq1  GAATTCATGTAGCATTCCTTTGTTTATGTATATACCTTCCACTTGCTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTAGCATTCCTTTGTTTATGTATATACCTTCCACTTGCTCAG  50

seq1  TGGCCCTGTTTAATCATTTCTCAATTCTCAGCTTCTTGCTCACTTCCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCTGTTTAATCATTTCTCAATTCTCAGCTTCTTGCTCACTTCCTGG  100

seq1  AACACAGTACAACCTCAGTAAAGAAAGACCAGGGTAGGTTGAAATTAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGTACAACCTCAGTAAAGAAAGACCAGGGTAGGTTGAAATTAAAA  150

seq1  TAAAATGTAGAAAACAAATTCAATCTATGTCTAAGGATGGAAAAAATATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGTAGAAAACAAATTCAATCTATGTCTAAGGATGGAAAAAATATA  200

seq1  TACATTGTGTATGTGGCATTCTATCCTATAATACTAAAAATCATCCTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTGTGTATGTGGCATTCTATCCTATAATACTAAAAATCATCCTAAG  250

seq1  ATTGATGTTGTTATTAATGCTTTATGCTCATCTTTAGCTGAGAAAATCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATGTTGTTATTAATGCTTTATGCTCATCTTTAGCTGAGAAAATCCA  300

seq1  TTGTGTGTAATTTATATTTTTATTATCTTTTAATGGTATTACAATCATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGTAATTTATATTTTTATTATCTTTTAATGGTATTACAATCATTA  350

seq1  TTTGATTTTGCATTTTGCTGCAATACTAAATACCAAATGCCCTCCATTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTTTGCATTTTGCTGCAATACTAAATACCAAATGCCCTCCATTGT  400

seq1  TAATTTTTTTTGCAGCAACCTCCTTAATATCCTGTCAAATAATATCCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTTTTTGCAGCAACCTCCTTAATATCCTGTCAAATAATATCCCAT  450

seq1  TATAATCAGAATGGTATTTCTATGCATTAACACTCTCCTAGAATAAGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATCAGAATGGTATTTCTATGCATTAACACTCTCCTAGAATAAGTCT  500

seq1  AGATATTCAGACTCTATAATCATCACTTCAATGACTATTCTTATAGATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTCAGACTCTATAATCATCACTTCAATGACTATTCTTATAGATAA  550

seq1  GCCTTCCCTTAATCCCACATAATTAATTTAGAATATAATCCAACATATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCCCTTAATCCCACATAATTAATTTAGAATATAATCCAACATATGA  600

seq1  GGAAAATGGATCCAAAAGAATAAGCTTCTAAATATGGGAGATAGACTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATGGATCCAAAAGAATAAGCTTCTAAATATGGGAGATAGACTTTT  650

seq1  TTTTTCAAAAATGATCTTGAATGTTCTGTGTGCACAGGAATGATGCATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAAAAATGATCTTGAATGTTCTGTGTGCACAGGAATGATGCATGT  700

seq1  AAGCTCAGGATACATGATAGGTACTTTGTATAGAGCTCTTTCATTGCTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCAGGATACATGATAGGTACTTTGTATAGAGCTCTTTCATTGCTTC  750

seq1  TCTGAC-TTTTTTGATTTGAAGTGTTTTTTCTATTACTATCACTCCTACA  799
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACTTTTTTTGATTTGAAGTGTTTTTTCTATTACTATCACTCCTACA  800

seq1  GAAAGCTTAGAGCCACCAAGCATTCACTGTGCAGTTGGCCTCAGCCATTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCTTAGAGCCACCAAGCATTCACTGTGCAGTTGGCCTCAGCCATTC  850

seq1  CCATACATTATCCCATTTAAGATTTACAAGTAGCTGCTTAAGAGAACAGT  899
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CCATACATTATCCCATTTAAGA-TTACAAGTAGCTGCTTAAGAGAACAGT  899

seq1  GTGCATTCTAATTCCAGGTTGTTTATGACACACAGAGTTTTATGAATGGA  949
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GTGCATTCTAATTCCAGGTTGTTTATGACACACAGAGTTTTATG-ATGGA  948

seq1  GCAATTGATAGAAGCCCTGGTCTGGATATTATCAAAACTGTGATCTTGAC  999
      ||||||||||| |||||| ||||||||| |||| ||||||||||||||||
seq2  GCAATTGATAG-AGCCCTTGTCTGGATA-TATC-AAACTGTGATCTTGAC  995

seq1  CATCTATTGGGTTTCTTTCAACAGAAGGCTCAGTTGGTGGCCCCTTAGAG  1049
      ||||||||||||||||||| |||| |||||||||| |||  ||| |||||
seq2  CATCTATTGGGTTTCTTTC-ACAG-AGGCTCAGTT-GTG--CCCCTAGAG  1040

seq1  TGTAAAGGTTAAATCATACAACTAATTTTTTTATTTTATAATAAAACAAA  1099
      || ||    |||||| ||| |||||||||||||||||| |||||||||| 
seq2  TGCAA---GTAAATC-TAC-ACTAATTTTTTTATTTTAAAATAAAACAA-  1084

seq1  CCTTTTCATTTG  1111
         |||||||||
seq2  --CTTTCATTTG  1094