BAC Information

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BAC

Clone NameB6Ng01-080D15
Chromosome11 (Build37)
Map Location 118,880,139 - 118,996,991
singlet/doubletdoublet
Overlap geneCbx2, Cbx8, Cbx4
Upstream genePgs1, Dnahc17, Pscd1, Usp36, Timp2, Ddc8, Lgals3bp, Cant1, C1qtnf1, D230014K01Rik, D11Bwg0517e, Enpp7
Downstream geneTbc1d16, Ccdc40, Gaa, Eif4a3, Card14, Sgsh, Slc26a11, LOC672511, Rnf213, A730011L01Rik, Nptx1, 4932417H02Rik, Chmp6, Baiap2, Aatk, Azi1, 2410002I01Rik, 1810043H04Rik, 1810073N04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080D15.bB6Ng01-080D15.g
ACCDH895424DH895425
length4761,164
definitionDH895424|Mus musculus domesticus DNA, BAC clone: B6Ng01-080D15, 5' end.DH895425|Mus musculus domesticus DNA, BAC clone: B6Ng01-080D15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,880,139 - 118,880,621)(118,995,813 - 118,996,991)
sequence
cgacattcaggaatgtcatatacactcgtgcaggcaacacactcaataca
catcaagtaaataaatctacaacgctgaaaggtaaaatgaaatcgtggaa
aggatacatttttgcactgaaaggctgcataaaagtcatcgcatgcccca
ccgccacacgaggcagcagtctcaggtaaaagcagacgtgtagtgtgcaa
ggctgtggttagtgtgtatcagtccaccccaccagcgaagcagcaatcat
atttagaaaccccctgggctcccaggcaggactgcacacactagtaatcc
caagtggacaggagatctaaaattcaagattgtccttggctatatagaga
actcaaagccagcctggtggggttgctgaaatgggggagggggagtgtgt
gtggatcaataaacaacacttaaggaattcagaatgccctttgacccatc
atccgtgacaatatctgtaatcacat
gaattcttcggaggaatggttggcagagctgactggctgcagctcgggga
catcggtcacctgcttgcagtacgagccagcacagttacccactgatggc
tggcactagcaaacataggcacggggtccctgaggtgccattagtctaca
aagtgaagcttctggagacacaccttggacagtctagaactcagccgagg
attcttaatccttcttcatcatggccaagagagggagaatggttctcacc
cccatctcccagattgggaaactgaggtacaaacagactaagtgaattgc
ttgtggttccacagctgttcttgactagctggatccaaaacggggcaagt
gtccagcttaataacaggtgtccccaagagaaaaacccaccaaacctggg
acctagacctgaaaggaaggcagcgtccatgagatcacccaggactggaa
gaagagatgtggccatccccacagaaacttggcctgggctctttgggtac
ccacagagagaaatgtccacgtggacacaggagagggtgggggcctgctg
tcactgtccctacctaccagacagcccaaggaacagccccagggaacaga
gcagtgaggtcagatgggagctctgagccctggctccaagctcatgccct
aaaaatggcagcagccttttcccaggcctccatttcctgtctatgctgga
cacaaacgggatacggggtagtcagtgtgcggctgccagcttagagctgg
agacgggctctgggctggtgccaactcagtgtcctgacccccttggggca
caggatgtaaagaaagatagacacagtaatccacagagctgccgaggagg
gtggcgggggccgtctctagtccctagcgtggtctctactatctcgggtc
cttgaaccttctgtcgtgttttgcgattggttcagaggccccactgcttt
tcctgctcgtccttatcgctgagtctaacagactacatggccgattgtgc
tcctgccggtgcggcagactgccgacaccccccagccttctctctttctt
tgatgactttggactatattggacttcatgtgagtcattcgtttcaggtg
actgtgccctgaaccaaaggagagtgggctccggtgaagttgcaaagaag
cctcgaatcccacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_118880139_118880621
seq2: B6Ng01-080D15.b_39_520

seq1  GAATTCCGACATTCAGGAATGTCATATACACTCGTGCAGGCAACACACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCGACATTCAGGAATGTCATATACACTCGTGCAGGCAACACACTC  50

seq1  AATACACATCAAGTAAATAAATCTACAACGCTGAAAGGTAAAATGAAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACACATCAAGTAAATAAATCTACAACGCTGAAAGGTAAAATGAAATC  100

seq1  GTGGAAAGGATACATTTTTGCACTGAAAGGCTGCATAAAAGTCATCGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAAGGATACATTTTTGCACTGAAAGGCTGCATAAAAGTCATCGCAT  150

seq1  GCCCCACCGCCACACGAGGCAGCAGTCTCAGGTAAAAGCAGACGTGTAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCACCGCCACACGAGGCAGCAGTCTCAGGTAAAAGCAGACGTGTAGT  200

seq1  GTGCAAGGCTGTGGTTAGTGTGTATCAGTCCACCCCACCAGCGAAGCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAAGGCTGTGGTTAGTGTGTATCAGTCCACCCCACCAGCGAAGCAGC  250

seq1  AATCATATTTAGAAACCCCCTGGGCTCCCAGGCAGGACTGCACACACTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATATTTAGAAACCCCCTGGGCTCCCAGGCAGGACTGCACACACTAG  300

seq1  TAATCCCAAGTGGACAGGAGATCTAAAATTCAAGATTGTCCTTGGCTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCCAAGTGGACAGGAGATCTAAAATTCAAGATTGTCCTTGGCTATA  350

seq1  TAGAGAACTCAAAGCCAGCCTGGTGGGGTTGCTGAAATGGGGGAGGGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAACTCAAAGCCAGCCTGGTGGGGTTGCTGAAATGGGGGAGGGGGA  400

seq1  GTGTGTGTGCATACAATAAACAACACATAAGGAATGCAGAATGCCCTTTG  450
      ||||||||| || ||||||||||||| |||||||| ||||||||||||||
seq2  GTGTGTGTGGAT-CAATAAACAACACTTAAGGAATTCAGAATGCCCTTTG  449

seq1  ACCCAGCATCCGTGACAATATCTGTAAGCACAT  483
      ||||| ||||||||||||||||||||| |||||
seq2  ACCCATCATCCGTGACAATATCTGTAATCACAT  482

seq1: chr11_118995813_118996991
seq2: B6Ng01-080D15.g_68_1231 (reverse)

seq1  GGTGGGA-TCGAGGGCTTCTCTGCCACTTTCACCGGAGCCCCCACTGCCC  49
      ||||||| |||| ||||||| ||| || ||||||||||  ||||||  ||
seq2  GGTGGGATTCGA-GGCTTCTTTGCAAC-TTCACCGGAG--CCCACTCTCC  46

seq1  TTCTGCTCAAGGGCCACACTGTCACCTG-AACGAATGACTCACAATGGAG  98
      ||  | ||| ||    ||| |||||||| |||||||||||||| ||| ||
seq2  TTTGGTTCAGGG----CACAGTCACCTGAAACGAATGACTCAC-ATGAAG  91

seq1  TCCATTATAGTTCCAAAGTCATCAAAGAAAGAGAGAGGGCTGGGGGGTGT  148
      |||| ||||| ||||||||||||||||||||||||| |||||||||||||
seq2  TCCAATATAG-TCCAAAGTCATCAAAGAAAGAGAGAAGGCTGGGGGGTGT  140

seq1  CCGGCAGTTCTGCCGCACCGGCAGGAGCACAATCGGCCATTGTAGTCTTG  198
       |||||| ||||||||||||||||||||||||||||||| ||||||| ||
seq2  -CGGCAG-TCTGCCGCACCGGCAGGAGCACAATCGGCCA-TGTAGTC-TG  186

seq1  TTAGACTCAGCGATAAGGACGGAGGCAGGAAAAGCAGTGGGGCCTCCTGA  248
      |||||||||||||||||||||   ||||||||||||||||||||| ||||
seq2  TTAGACTCAGCGATAAGGACG--AGCAGGAAAAGCAGTGGGGCCT-CTGA  233

seq1  ACCAATCGCAAAACACGACAGAAGGTTCAAGGACCCGAGATAGTAGAGAC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATCGCAAAACACGACAGAAGGTTCAAGGACCCGAGATAGTAGAGAC  283

seq1  CACGCTAGGGACTAGAGACGGCCCCCGCCACCCTCCTCGGCAGCTCTGTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCTAGGGACTAGAGACGGCCCCCGCCACCCTCCTCGGCAGCTCTGTG  333

seq1  GATTACTGTGTCTATCTTTCTTTACATCCTGTGCCCCAAGGGGGTCAGGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACTGTGTCTATCTTTCTTTACATCCTGTGCCCCAAGGGGGTCAGGA  383

seq1  CACTGAGTTGGCACCAGCCCAGAGCCCGTCTCCAGCTCTAAGCTGGCAGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGTTGGCACCAGCCCAGAGCCCGTCTCCAGCTCTAAGCTGGCAGC  433

seq1  CGCACACTGACTACCCCGTATCCCGTTTGTGTCCAGCATAGACAGGAAAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACACTGACTACCCCGTATCCCGTTTGTGTCCAGCATAGACAGGAAAT  483

seq1  GGAGGCCTGGGAAAAGGCTGCTGCCATTTTTAGGGCATGAGCTTGGAGCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCCTGGGAAAAGGCTGCTGCCATTTTTAGGGCATGAGCTTGGAGCC  533

seq1  AGGGCTCAGAGCTCCCATCTGACCTCACTGCTCTGTTCCCTGGGGCTGTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTCAGAGCTCCCATCTGACCTCACTGCTCTGTTCCCTGGGGCTGTT  583

seq1  CCTTGGGCTGTCTGGTAGGTAGGGACAGTGACAGCAGGCCCCCACCCTCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGGCTGTCTGGTAGGTAGGGACAGTGACAGCAGGCCCCCACCCTCT  633

seq1  CCTGTGTCCACGTGGACATTTCTCTCTGTGGGTACCCAAAGAGCCCAGGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTCCACGTGGACATTTCTCTCTGTGGGTACCCAAAGAGCCCAGGC  683

seq1  CAAGTTTCTGTGGGGATGGCCACATCTCTTCTTCCAGTCCTGGGTGATCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTTCTGTGGGGATGGCCACATCTCTTCTTCCAGTCCTGGGTGATCT  733

seq1  CATGGACGCTGCCTTCCTTTCAGGTCTAGGTCCCAGGTTTGGTGGGTTTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGACGCTGCCTTCCTTTCAGGTCTAGGTCCCAGGTTTGGTGGGTTTT  783

seq1  TCTCTTGGGGACACCTGTTATTAAGCTGGACACTTGCCCCGTTTTGGATC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTGGGGACACCTGTTATTAAGCTGGACACTTGCCCCGTTTTGGATC  833

seq1  CAGCTAGTCAAGAACAGCTGTGGAACCACAAGCAATTCACTTAGTCTGTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAGTCAAGAACAGCTGTGGAACCACAAGCAATTCACTTAGTCTGTT  883

seq1  TGTACCTCAGTTTCCCAATCTGGGAGATGGGGGTGAGAACCATTCTCCCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCTCAGTTTCCCAATCTGGGAGATGGGGGTGAGAACCATTCTCCCT  933

seq1  CTCTTGGCCATGATGAAGAAGGATTAAGAATCCTCGGCTGAGTTCTAGAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGGCCATGATGAAGAAGGATTAAGAATCCTCGGCTGAGTTCTAGAC  983

seq1  TGTCCAAGGTGTGTCTCCAGAAGCTTCACTTTGTAGACTAATGGCACCTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAAGGTGTGTCTCCAGAAGCTTCACTTTGTAGACTAATGGCACCTC  1033

seq1  AGGGACCCCGTGCCTATGTTTGCTAGTGCCAGCCATCAGTGGGTAACTGT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACCCCGTGCCTATGTTTGCTAGTGCCAGCCATCAGTGGGTAACTGT  1083

seq1  GCTGGCTCGTACTGCAAGCAGGTGACCGATGTCCCCGAGCTGCAGCCAGT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCTCGTACTGCAAGCAGGTGACCGATGTCCCCGAGCTGCAGCCAGT  1133

seq1  CAGCTCTGCCAACCATTCCTCCGAAGAATTC  1179
      |||||||||||||||||||||||||||||||
seq2  CAGCTCTGCCAACCATTCCTCCGAAGAATTC  1164