BAC Information

Click to search

BAC

Clone NameB6Ng01-080P01
Chromosome11 (Build37)X (Build37)
Map Location 3,086,747 - 3,087,141136,738,586 - 136,739,589
singlet/doubletsingletsinglet
Overlap geneSfi1
Upstream geneLOC236604, LOC623257
Downstream geneEif4enif1, Drg1, Patz1, Pik3ip1, Limk2, Rnf185, 8430429K09Rik, LOC100041573, Pla2g3, Pib5pa, Selm, Smtn, Map1lc3-5, LOC625608, Tug1, Morc2a, LOC664900, Osbp2, LOC664920, 4921536K21Rik, Dusp18, Slc35e4, Tcn2, LOC100041720, Pes1, Gal3st1, Sec14l4, Sec14l3, 1700020C11Rik, Sec14l2, LOC625729, Rnf215, 4930562D19Rik, Sf3a1, Tbc1d10a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080P01.bB6Ng01-080P01.g
ACCDH895938DH895939
length8411,006
definitionDH895938|Mus musculus domesticus DNA, BAC clone: B6Ng01-080P01, 5' end.DH895939|Mus musculus domesticus DNA, BAC clone: B6Ng01-080P01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(3,086,747 - 3,087,141)(136,738,586 - 136,739,589)
sequence
gaattctctaccaaagaattaaagccacaggcagaaaataacaggcttga
ggccaggatgcatacagaggttagacgtagagtaagggaagagaaggaag
tgaggtgtctccttagaaaggagacagagaatatataattatggagagac
agaagaaagactggaacaggaggataaaatagggaaagggaaggaagagg
agggtaggggaaaatacaaggagggataactaacactaaagatcatctga
gggccatatagaaacctactatagtagaagtttcttaaaatatatgcatc
taggggagaaatataaaagcagttatcaaataaggggggaggcagtgccc
caattagatatctttcatcaagtgaaacctccagtaccaggaatggatta
cgtctacttgagtgattggccaaagagggtcctgtgggaacccccaaaca
acctaggctattgccaaggctattggttactctctacaaactgacggtaa
gacggtaaggctctattgctgaagacaacacttttttttttttttttttg
gtttttcgagacagggtttctctgtgtagccctggatgtcctggaactca
ctctttagaccaggctggccttgaactcagaaatccgcctgcctctgcct
cccaagtgctgggattaaaggcatgtgccaccactgccaggctgaagaaa
aacacacaagtcacttgaacacagcgatgttgaaactggtgcccacctag
actaaccgttcatgggattggaaggtactcttgcgccctactagaggaga
gggggatccccaaatttttgcccattaaacctggggaccta
gaattccttatatttgtttcctgttgcataaaatcatattgatttgtgtt
tttctaaacataacccctttcaaagcctctagtgggctataatagtctcc
tgggcctcatgaacggtatctctattcactatctccatgggcctgcctca
gctcagctgtttctctctgtacacaaaattctgaagcaggtattatttga
gtaaaagaagaagtgtgtgggtcctgaacaggcccagcgtttgttttact
gccctgatcccggtggtagatgtatatttagcttttgcaaggtgacctgt
gacattgtgcttttgctggcaggcgtgcctcatctaatttgtgatgatgg
tgaagtgggttttgaaattacaaaacaatccctcccaacaaaatctagac
aactttctgaggccatggaagggtctctggttatattccaagatctcaca
gttcttgggaagaccatgttttatcatgtgataaaaacttcccttgtgct
aggaaagcatggagcccagggtacagcagcaagatcatctcccaccctcc
tcccccaaattagccattagaagatgcacagcttgaaaccctactataaa
gaaaaatgactaccttgtagaaaatgagcctggctactgtactgtacttg
tatctgattcttgattactatatggctccttctgcttaccttcatatttc
cacatctttctcataaaaaaaaactatgaggataaatgatattacaaaaa
aattaaatagctatttatagtactacatccttctaaataggagggctact
ggtacagaaagaaaaagattcttagttctgtcgaagacttgatggattga
tttgttagatgctctagtagaggaaaaagaaactgaagatcgggtaaaaa
acacagtctaggggtgggggatggtaaatgcgcaaaggatgaaaaagatg
agattataaggacttgaggagtgactcctcccattagtctcctaagcatc
agtaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_3086747_3087141
seq2: B6Ng01-080P01.b_689_884

seq1  CTGCCTCCTCAAGTGCTGGGATTAAAAACATGTGCCATCTCACCTGACTC  50
      |||||||| |||||||||||||||||  ||||||||| |       ||| 
seq2  CTGCCTCC-CAAGTGCTGGGATTAAAGGCATGTGCCACC-------ACTG  42

seq1  ACAAG-TCTAGGAAACAAAACAA---ACTTATAAATA---AGGTTAATTC  93
       || | |  || |||  | ||||   ||||  | | |   | ||| |  |
seq2  CCAGGCTGAAGAAAAACACACAAGTCACTTGAACACAGCGATGTTGAAAC  92

seq1  TGGACTTTATCCAATTTCCACAGTACAGTCATGTTTTCCCATCCATTCCT  143
      |||           |  ||||  || | | |       || | |||    
seq2  TGG-----------TGCCCAC-CTAGACTAA-------CCGTTCAT---G  120

seq1  GTATGGGTGTGTA----TGCACACACACACAGGAGA--ATGAAACACAAA  187
      | || ||   |||    ||| | |    | ||||||    ||  | ||||
seq2  GGATTGGAAGGTACTCTTGCGCCCTACTAGAGGAGAGGGGGATCCCCAAA  170

seq1  GCTTCTTGCAGTTTAAGCAGGTATTCTGGCATTGA-CTTGCAAAACCAGC  236
        || ||||   |||| |       ||||    || ||            
seq2  --TTTTTGCCCATTAAAC-------CTGG---GGACCT------------  196

seq1  CAGTTTATAATTATTCCTTTAAAGACAGGCATTGCTGTAGTAAAATTCTG  286
                                                        
seq2  --------------------------------------------------  196

seq1  AGTCTATAAGTCTCAAAGGTTCTAGTAAATTGAGGTCTGCACAGTTTAAC  336
                                                        
seq2  --------------------------------------------------  196

seq1  ACGCACCAAGAATACCTTGGGGACTTCTCTGTGCCTGACCAGTTTAAACC  386
                                                        
seq2  --------------------------------------------------  196

seq1  TGGGGACCT  395
               
seq2  ---------  196

seq1: chrX_136738586_136739589
seq2: B6Ng01-080P01.g_69_1073

seq1  GAATTCCTTATATTTGTTTCCTGTTGCATAAAATCATATTGATTTGTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTATATTTGTTTCCTGTTGCATAAAATCATATTGATTTGTGTT  50

seq1  TTTCTAAACATAACCCCTTTCAAAGCCTCTAGTGGGCTATAATAGTCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAAACATAACCCCTTTCAAAGCCTCTAGTGGGCTATAATAGTCTCC  100

seq1  TGGGCCTCATGAACGGTATCTCTATTCACTATCTCCATGGGCCTGCCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCTCATGAACGGTATCTCTATTCACTATCTCCATGGGCCTGCCTCA  150

seq1  GCTCAGCTGTTTCTCTCTGTACACAAAATTCTGAAGCAGGTATTATTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGCTGTTTCTCTCTGTACACAAAATTCTGAAGCAGGTATTATTTGA  200

seq1  GTAAAAGAAGAAGTGTGTGGGTCCTGAACAGGCCCAGCGTTTGTTTTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAGAAGAAGTGTGTGGGTCCTGAACAGGCCCAGCGTTTGTTTTACT  250

seq1  GCCCTGATCCCGGTGGTAGATGTATATTTAGCTTTTGCAAGGTGACCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGATCCCGGTGGTAGATGTATATTTAGCTTTTGCAAGGTGACCTGT  300

seq1  GACATTGTGCTTTTGCTGGCAGGCGTGCCTCATCTAATTTGTGATGATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTGTGCTTTTGCTGGCAGGCGTGCCTCATCTAATTTGTGATGATGG  350

seq1  TGAAGTGGGTTTTGAAATTACAAAACAATCCCTCCCAACAAAATCTAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTGGGTTTTGAAATTACAAAACAATCCCTCCCAACAAAATCTAGAC  400

seq1  AACTTTCTGAGGCCATGGAAGGGTCTCTGGTTATATTCCAAGATCTCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTCTGAGGCCATGGAAGGGTCTCTGGTTATATTCCAAGATCTCACA  450

seq1  GTTCTTGGGAAGACCATGTTTTATCATGTGATAAAAACTTCCCTTGTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTGGGAAGACCATGTTTTATCATGTGATAAAAACTTCCCTTGTGCT  500

seq1  AGGAAAGCATGGAGCCCAGGGTACAGCAGCAAGATCATCTCCCACCCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGCATGGAGCCCAGGGTACAGCAGCAAGATCATCTCCCACCCTCC  550

seq1  TCCCCCAAATTAGCCATTAGAAGATGCACAGCTTGAAACCCTACTATAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCAAATTAGCCATTAGAAGATGCACAGCTTGAAACCCTACTATAAA  600

seq1  GAAAAATGACTACCTTGTAGAAAATGAGCCTGGCTACTGTACTGTACTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATGACTACCTTGTAGAAAATGAGCCTGGCTACTGTACTGTACTTG  650

seq1  TATCTGATTCTTGATTACTATATGGCTCCTTCTGCTTACCTTCATATTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGATTCTTGATTACTATATGGCTCCTTCTGCTTACCTTCATATTTC  700

seq1  CACATCTTTCTCATAAAAAAAAACTATGAGGATAAATGATATTACAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTTTCTCATAAAAAAAAACTATGAGGATAAATGATATTACAAAAA  750

seq1  AATTAAATAGCTATTTATAGTACTACATCCTTCTAAATAGGAGGGCTACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAATAGCTATTTATAGTACTACATCCTTCTAAATAGGAGGGCTACT  800

seq1  GGTACAGAAAG-AAAAGATTCTTAGTTCTGTCGAAGACTTGATGGATTGA  849
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GGTACAGAAAGAAAAAGATTCTTAGTTCTGTCGAAGACTTGATGGATTGA  850

seq1  TTTGTTAGATGCTCTAGTAGAGGGAGAAGAAACTGAAGATCGGGT-AAAA  898
      ||||||||||||||||||||||| | ||||||||||||||||||| ||||
seq2  TTTGTTAGATGCTCTAGTAGAGGAAAAAGAAACTGAAGATCGGGTAAAAA  900

seq1  ACACAGTCTA-GGGTGGGGGATGGTAAATGCGCAAAGGATGAAGAAGAAT  947
      |||||||||| |||||||||||||||||||||||||||||||| ||| ||
seq2  ACACAGTCTAGGGGTGGGGGATGGTAAATGCGCAAAGGATGAAAAAG-AT  949

seq1  GAGATTATAAGGACTTGAGGAGTGACTCCTCCCCATTAGTCTCCTAAGCA  997
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GAGATTATAAGGACTTGAGGAGTGACTCCT-CCCATTAGTCTCCTAAGCA  998

seq1  TCAGTAA  1004
      |||||||
seq2  TCAGTAA  1005