BAC Information

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BAC

Clone NameB6Ng01-082O21
Chromosome11 (Build37)
Map Location 116,198,308 - 116,368,162
singlet/doubletdoublet
Overlap geneLOC668255, 1110014K08Rik, Qrich2, Prpsap1, LOC629971
Upstream geneOtop3, C630004H02Rik, Cdr2l, Ict1, Atp5h, Kctd2, 4933422H20Rik, Slc16a5, Armc7, Nt5c, Hn1, Sumo2, Nup85, Gga3, Mrps7, Mif4gd, Slc25a19, Grb2, LOC100043184, 2310067B10Rik, Caskin2, Tsen54, Llgl2, Recql5, 2210020M01Rik, Sap30bp, Itgb4, Galk1, H3f3b, Unk, Unc13d, Wbp2, Trim47, Trim65, Mrpl38, Fbf1, Acox1, 2310004N24Rik, Cdk3, Evpl, Srp68, Galr2, Exoc7, Foxj1
Downstream geneSphk1, Ube2o, Aanat, Rhbdf2, Cygb, OTTMUSG00000003947, 1810032O08Rik, St6galnac2, LOC634720, BC018473, St6galnac1, Mxra7, Jmjd6, 1110005A03Rik, LOC100043293, Sfrs2, Mfsd11, Mgat5b, LOC100042036, Sec14l1, Sept9, EG667423
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082O21.bB6Ng01-082O21.g
ACCDH897336DH897337
length1,1421,034
definitionDH897336|Mus musculus domesticus DNA, BAC clone: B6Ng01-082O21, 5' end.DH897337|Mus musculus domesticus DNA, BAC clone: B6Ng01-082O21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,198,308 - 116,199,460)(116,367,120 - 116,368,162)
sequence
gaattcaggctgagcacttgtgaagggagacggaagggctgattataatg
gctttttcgagggttcctggccactgtggctactgtttacccgaatctcc
ttcatctcagcttcttcccctcctcccaggtcacaccacactgtgaacac
cgcttacctactgcctgccaggggagaagggctacgtgcagccgtgcagc
cgtcccaggctcagggaacttccctgttgtttctgttctggtttttgagg
aggtgtggatattgctcagcctacactggtgtaaaccttaagtgtgggag
ggaggggccctcgggatgctgaggaagtaaaagacgggaagcagggtgtt
cagaaggggcaacatgggatctgaagctcagcctgtcccacgtcccgcag
cgcagcagagcccctaacagtgggattaccatggaaaggagagctgtgcg
gtggtgcaggcctgtgatcctaactcttgggcagtaccggcaggaaaacc
cgaagttcaaggtcattcccagccacatggcaagtttgcagccggactct
ccacccccgacctcccctcaggatcctgggcactggcattttggggaaag
cctttcaaagaacacacttgcaagtctaaagctcctcgtatcgcaccctc
ataagtgactgtcactaatcttgatccccaaaccatctcatgttccgctg
aacgactttctgttccaaaagccactagataggcatctactttagagcca
tgttaaaacccactgaacccaacaatttcctgccagcttgctgctatggc
tttgagtgctaacctgacagcatctctcagcactggtgagcccacctctc
atctatcccatctgaaaggcaggggaggaatgcactagggtagggaggtc
tcctaatcctctggccccagagcctccaccattcctttggtgtcctgtgc
acagtttgagaaccactgggcctcagctcttagcctagttcttcagctat
tacaagagggcagaaaaagtggttagcttggttcaagaacccccctcagt
ggctgtgtgacgaattggagagtcctgcccagcactgcagggagtgccag
tgcttctgacctgcactggagagacaggccttgcaaggggta
gaattcattggatggatgattgtcctcaggggaggggacctccccaggct
accgttgcctatcagggtttacgttcctgccaccgctgacagatggctca
gagagatcattgacatttgtgttggttggaggttttaagtgccatcgcct
gtatctccttgaacctaacccatttggcacacttgcacaaggagccttgt
gacttcctgtattgtttgctttggggtttatcgtggctaatcgtctgtat
ctttgcctatatcctgtatccaggtctcggtgggtgtggactctcctccc
tctgttgcttgctctatcttttatctaaccggtgctgccgcatatctagc
catatgtcatggaaactgctcttgcttgacaggagtgtccccatgcacag
agaaggcacaagacagtgtctactgaatcagatcttcaagggcgcatagg
tacttggagcccactggaatgcctgcaaagccctcactaggagccatcaa
aacctcacaggcatcggaggtctcagtccacccaagggcactggactttc
aattccatctcagcttctccagcggccaccgaagcatctgctccctacca
ctgtccttgctgagcttggagggtcactcctagcgtgcttggctccgcgg
ccctgtgttcggcccttgtgcccagcagggtttttgggatcctgtagaga
gaatcagcttagagatccaagatagtgttatttttagaaataaagatcat
cagacctcggctttcagagatgctcagaggatgaaaagagagaaggcatc
ctggttctctaaagttcaagttggaataggccaaaaaaaccctgaatgtt
ttaggctggtgaggcaaggcagaagcttggaactagcatggcgtgaggcc
ctggtgccagcccagcactgcaataggatcgtagcctgaaagggcctcat
ttgttagagacagatctgtctacccacagtccactggtgacagccaaaca
catcatccctgcctgctctatcaggccctgcctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_116198308_116199460
seq2: B6Ng01-082O21.b_50_1191

seq1  GAATTCAGGCTGAGCACTTGTGAAGGGAGACGGAAGGGCTGATTATAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGCTGAGCACTTGTGAAGGGAGACGGAAGGGCTGATTATAATG  50

seq1  GCTTTTTCGAGGGTTCCTGGCCACTGTGGCTACTGTTTACCCGAATCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTTCGAGGGTTCCTGGCCACTGTGGCTACTGTTTACCCGAATCTCC  100

seq1  TTCATCTCAGCTTCTTCCCCTCCTCCCAGGTCACACCACACTGTGAACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCTCAGCTTCTTCCCCTCCTCCCAGGTCACACCACACTGTGAACAC  150

seq1  CGCTTACCTACTGCCTGCCAGGGGAGAAGGGCTACGTGCAGCCGTGCAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTACCTACTGCCTGCCAGGGGAGAAGGGCTACGTGCAGCCGTGCAGC  200

seq1  CGTCCCAGGCTCAGGGAACTTCCCTGTTGTTTCTGTTCTGGTTTTTGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCCAGGCTCAGGGAACTTCCCTGTTGTTTCTGTTCTGGTTTTTGAGG  250

seq1  AGGTGTGGATATTGCTCAGCCTACACTGGTGTAAACCTTAAGTGTGGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTGGATATTGCTCAGCCTACACTGGTGTAAACCTTAAGTGTGGGAG  300

seq1  GGAGGGGCCCTCGGGATGCTGAGGAAGTAAAAGACGGGAAGCAGGGTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGCCCTCGGGATGCTGAGGAAGTAAAAGACGGGAAGCAGGGTGTT  350

seq1  CAGAAGGGGCAACATGGGATCTGAAGCTCAGCCTGTCCCACGTCCCGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGGGGCAACATGGGATCTGAAGCTCAGCCTGTCCCACGTCCCGCAG  400

seq1  CGCAGCAGAGCCCCTAACAGTGGGATTACCATGGAAAGGAGAGCTGTGCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGCAGAGCCCCTAACAGTGGGATTACCATGGAAAGGAGAGCTGTGCG  450

seq1  GTGGTGCAGGCCTGTGATCCTAACTCTTGGGCAGTACCGGCAGGAAAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGCAGGCCTGTGATCCTAACTCTTGGGCAGTACCGGCAGGAAAACC  500

seq1  CGAAGTTCAAGGTCATTCCCAGCCACATGGCAAGTTTGCAGCCGGACTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGTTCAAGGTCATTCCCAGCCACATGGCAAGTTTGCAGCCGGACTCT  550

seq1  CCACCCCCGACCTCCCCTCAGGATCCTGGGCACTGGCATTTTGGGGAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCCGACCTCCCCTCAGGATCCTGGGCACTGGCATTTTGGGGAAAG  600

seq1  CCTTTCAAAGAACACACTTGCAAGTCTAAAGCTCCTCGTATCGCACCCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCAAAGAACACACTTGCAAGTCTAAAGCTCCTCGTATCGCACCCTC  650

seq1  ATAAGTGACTGTCACTAATCTTGATCCCCAAACCATCTCATGTTCCGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTGACTGTCACTAATCTTGATCCCCAAACCATCTCATGTTCCGCTG  700

seq1  AACGACTTTCTGTTCCAAAAGCCACTAGATAGGCATCTACTTTAGAGCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGACTTTCTGTTCCAAAAGCCACTAGATAGGCATCTACTTTAGAGCCA  750

seq1  TGTTAAAACCCACTGAACCCAACAATTTCCTGCCAGCTTGCTGCTATGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAAACCCACTGAACCCAACAATTTCCTGCCAGCTTGCTGCTATGGC  800

seq1  TTTGAGTGCTAACCTGACAGCATCTCTCAGCACTGGTGAGCCCACCTCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGTGCTAACCTGACAGCATCTCTCAGCACTGGTGAGCCCACCTCTC  850

seq1  ATCTATCCCATCTGAAAGGCAGGGGAGGAATGCACTAGGGTAGGGAGGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATCCCATCTGAAAGGCAGGGGAGGAATGCACTAGGGTAGGGAGGTC  900

seq1  TCCTAATCCTCTGGCCCCAGAGCCTCCACCATTCCTTTGGTGTTCCTGTG  950
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TCCTAATCCTCTGGCCCCAGAGCCTCCACCATTCCTTTGGTG-TCCTGTG  949

seq1  CACCAGTTTGAGAACCACTGGGCCTCAGCTCTTAGCCTAGTTCTTCAGCT  1000
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CA-CAGTTTGAGAACCACTGGGCCTCAGCTCTTAGCCTAGTTCTTCAGCT  998

seq1  ATTACAAAGAGGGCAG-AGAAGTGGTTAGCTGGGTTCAAGA--CCCCCTC  1047
      ||||| |||||||||| | |||||||||||| |||||||||  |||||||
seq2  ATTAC-AAGAGGGCAGAAAAAGTGGTTAGCTTGGTTCAAGAACCCCCCTC  1047

seq1  AGTGGCTGTAGTGACGATATGGGAAGAG-CCTGCCCAAGCACTGCAGGGA  1096
      ||||||||| |||||||  |||  |||| ||||||| |||||||||||| 
seq2  AGTGGCTGT-GTGACGAATTGG--AGAGTCCTGCCC-AGCACTGCAGGG-  1092

seq1  AGTGGCCCAGTAGGCCTTCCTGA-CTGCACTGGAGGAGGACAGGCCTTGC  1145
      ||||  |||||  ||  | |||| |||||||||||   ||||||||||||
seq2  AGTG--CCAGT--GC--TTCTGACCTGCACTGGAG--AGACAGGCCTTGC  1134

seq1  AAGGGGTA  1153
      ||||||||
seq2  AAGGGGTA  1142

seq1: chr11_116367120_116368162
seq2: B6Ng01-082O21.g_69_1102 (reverse)

seq1  CAGGCAGGGCCTGATAGAGCAGGCAAGGGAGGATGTGTTTGGGCCTGTCA  50
      |||||||||||||||||||||||| ||||| |||||||||||  ||||||
seq2  CAGGCAGGGCCTGATAGAGCAGGC-AGGGATGATGTGTTTGG--CTGTCA  47

seq1  CCCAGGTGGACTGTTGGGAAGACAAGATCTGTCTCTAACAAATGAGGCCC  100
      ||   |||||||| |||| |||| ||||||||||||||||||||||||||
seq2  CC--AGTGGACTG-TGGGTAGAC-AGATCTGTCTCTAACAAATGAGGCCC  93

seq1  TTTCAGGCTACGATCTTATTGCAGTGCTGGGCTGGCACCCAGGGCCTCAC  150
      ||||||||||||||| ||||||||||||||||||||| ||||||||||||
seq2  TTTCAGGCTACGATCCTATTGCAGTGCTGGGCTGGCA-CCAGGGCCTCAC  142

seq1  GCCATGCTAGGTCCAAGCTTCTGCCTTGCCTCACCAGCCTAAAACATTCA  200
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GCCATGCTAGTTCCAAGCTTCTGCCTTGCCTCACCAGCCTAAAACATTCA  192

seq1  GGGTTTTTTTTGCCTTATTCCAACTTGAACTTTAGAGAACCAGGATGCCT  250
      |||||||||| ||| |||||||||||||||||||||||||||||||||||
seq2  GGGTTTTTTTGGCC-TATTCCAACTTGAACTTTAGAGAACCAGGATGCCT  241

seq1  TCTCTCTTTTCATCCTCTGAGCATCTCTGAAAGCCGAGGTCTGATGATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTTTTCATCCTCTGAGCATCTCTGAAAGCCGAGGTCTGATGATCT  291

seq1  TTATTTCTAAAAATAACACTATCTTGGATCTCTAAGCTGATTCTCTCTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCTAAAAATAACACTATCTTGGATCTCTAAGCTGATTCTCTCTAC  341

seq1  AGGATCCCAAAAACCCTGCTGGGCACAAGGGCCGAACACAGGGCCGCGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCCCAAAAACCCTGCTGGGCACAAGGGCCGAACACAGGGCCGCGGA  391

seq1  GCCAAGCACGCTAGGAGTGACCCTCCAAGCTCAGCAAGGACAGTGGTAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGCACGCTAGGAGTGACCCTCCAAGCTCAGCAAGGACAGTGGTAGG  441

seq1  GAGCAGATGCTTCGGTGGCCGCTGGAGAAGCTGAGATGGAATTGAAAGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGATGCTTCGGTGGCCGCTGGAGAAGCTGAGATGGAATTGAAAGTC  491

seq1  CAGTGCCCTTGGGTGGACTGAGACCTCCGATGCCTGTGAGGTTTTGATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCCCTTGGGTGGACTGAGACCTCCGATGCCTGTGAGGTTTTGATGG  541

seq1  CTCCTAGTGAGGGCTTTGCAGGCATTCCAGTGGGCTCCAAGTACCTATGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAGTGAGGGCTTTGCAGGCATTCCAGTGGGCTCCAAGTACCTATGC  591

seq1  GCCCTTGAAGATCTGATTCAGTAGACACTGTCTTGTGCCTTCTCTGTGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTGAAGATCTGATTCAGTAGACACTGTCTTGTGCCTTCTCTGTGCA  641

seq1  TGGGGACACTCCTGTCAAGCAAGAGCAGTTTCCATGACATATGGCTAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGACACTCCTGTCAAGCAAGAGCAGTTTCCATGACATATGGCTAGAT  691

seq1  ATGCGGCAGCACCGGTTAGATAAAAGATAGAGCAAGCAACAGAGGGAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGGCAGCACCGGTTAGATAAAAGATAGAGCAAGCAACAGAGGGAGGA  741

seq1  GAGTCCACACCCACCGAGACCTGGATACAGGATATAGGCAAAGATACAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCACACCCACCGAGACCTGGATACAGGATATAGGCAAAGATACAGA  791

seq1  CGATTAGCCACGATAAACCCCAAAGCAAACAATACAGGAAGTCACAAGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATTAGCCACGATAAACCCCAAAGCAAACAATACAGGAAGTCACAAGGC  841

seq1  TCCTTGTGCAAGTGTGCCAAATGGGTTAGGTTCAAGGAGATACAGGCGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGTGCAAGTGTGCCAAATGGGTTAGGTTCAAGGAGATACAGGCGAT  891

seq1  GGCACTTAAAACCTCCAACCAACACAAATGTCAATGATCTCTCTGAGCCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTTAAAACCTCCAACCAACACAAATGTCAATGATCTCTCTGAGCCA  941

seq1  TCTGTCAGCGGTGGCAGGAACGTAAACCCTGATAGGCAACGGTAGCCTGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCAGCGGTGGCAGGAACGTAAACCCTGATAGGCAACGGTAGCCTGG  991

seq1  GGAGGTCCCCTCCCCTGAGGACAATCATCCATCCAATGAATTC  1043
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTCCCCTCCCCTGAGGACAATCATCCATCCAATGAATTC  1034