BAC Information

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BAC

Clone NameB6Ng01-083F13
Chromosome11 (Build37)
Map Location 51,439,786 - 51,440,939
singlet/doubletsinglet
Overlap geneRmnd5b
Upstream geneAdamts2, Zfp354c, 9630041N07Rik, Grm6, Zfp454, Zfp2, Zfp354b, Prop1, Olfr1379-ps1, Olfr1378, Olfr1377, Olfr226-ps1, Olfr51, Olfr54, Olfr1375-ps1, Zfp354a, LOC100040275, LOC382518, Olfr1374-ps1, 5133400J02Rik, LOC622699, BC049762, Clk4, Col23a1, Agxt2l2, Hnrpab, Nola2
Downstream geneC330016O10Rik, D930048N14Rik, 0610009B22Rik, Sec24a, LOC100040402, Sar1b, Phf15, D11Ertd497e, Ube2b, Cdkl3, LOC100040437, Ppp2ca, Olfr1373, Olfr1372-ps1, Olfr1371, Skp1a, Tcf7, Vdac1, 9530068E07Rik, LOC667659, LOC667667, LOC100040523
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083F13.bB6Ng01-083F13.g
ACCDH897634DH897635
length1,1401,243
definitionDH897634|Mus musculus domesticus DNA, BAC clone: B6Ng01-083F13, 5' end.DH897635|Mus musculus domesticus DNA, BAC clone: B6Ng01-083F13, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactgtgtaggctaggctggtctcaaactcacagaaatcctcctg
cctctcaagtgttgtgaccacatccaatttcttgggcttctgagataagg
tctggctgaatagagcaggctagcctcccaccggtctttcagtgtcaggt
ctggggactatgcagaatcacactctgtctgcccagtgatgatgtttagc
ctctgcaggatggaaagcgaacaacaggggctcttgctaccagcagacca
caattccttgcctttttccagccaacctttggctgaggaagttttaatat
atgaaggatttggggacactgccttgcatctttcccaggaatcgacattg
aatgtggacctggacttcaagcagcccttcttggagttgaatcggatctt
ggaagctctgcacgagcaagacctaggacctgcgctggagtaagggtgcc
tgactcattccagccatgctttagggattcactgtctagggccctctgta
gccactacccactgcactgtattgtctctccccagatgggctgtatctca
caggcagcgcctgctggagctcaacagctcgctggagttcaagctgcacc
ggctgcactttatccgcctcctagctgggggccccgagaagcagctggag
gccctcagctatgctcggcacttccagccttttgctaggctacaccagag
aggtaagtgcccagggtgctgggggctagggctaggctccagcctgtgtt
tggacatgttgggtggcctgtctttgtacccacagatagtctcttaccag
aaagatgcctccccacagtttagaaacttttgactcttttgcctctaaag
tgaagtccaaagcaaaggcacagctgaggcaggaggtcagctttagtgta
tgttagtcatactagtgtaggctagcgtggcaatggcaaggagttagacc
ataagttgagatacattattacctatacagtggcctactgcatgcatgcc
tgcagagagcatagacattagaaagatggtcatgggccaccatgtggttg
ctgggattgactagacctctgaagatgaacagtgcttctggacctctgga
gcatctttcagcttcaattttaaaaaataaaaattataaa
gaattcttcccccacctgatagtcaatcagctgatgtgccaaaaaacagg
tcatcaggccctcggtcccagggccctcaaagatatgggaaccggtttgt
caggacccaggaagcagtcagagaggcgacccaggaagacccacaagggt
ggacctgcgtgccgcctccgacttcctattaatgcctcaaatgagtattc
agccggtgccagtggagcctataccatccttgcccccgggaaccatgggc
cttattctcggccggggttcactcaccttgcagggcttagtagtccaccc
tggagttatggattgtcaacattcccctgaaatacaggtcctgtgctcaa
gccctaaaggcgttttttctattagtaaaggagataggatagctcagctg
ctgctcctccctgataataccagggagaaatctgcaggacctgagataaa
gaaaatgggctcctcaggaaatgattctgcctatttggttgtatctttaa
atgatagacctaagctccgccttaagatcaacggaaaagagtttgaaggc
atccttgataccggagcagataaaagtataatttctacacattggtggcc
caaagcatggcccaccacagagtcatctcattcattacagggcctaggat
atcaatcatgtcccactataagctccgttgccttgacgtgggaatcctct
gaaggacagcaagggaaattcatacctttatgtgctcccactcccggtta
acctctggggaagggatattatgcagcatttgggccttattttgtccaat
gagagagcagcgttgggggataatgtcgatatttccactcccaatgacgg
tgatgtataatgctcaagtattctcttgcttttttaccactaactgggaa
ctgggtttggcctttatttcagacagccttggctctgtcttggacagttc
agacgactgacaccattaacactttgtcagcctcggtgactacagtcata
gaataaacaggcctcactatgttttagatacagagaggtctcatgcttgt
tatcaactcatagattcttgtcagattcactagatgtattatggcaatag
ctcatctgggtgtaaacaaagtttcggattgtgtttatttccatctgaag
taatactaggcaagcaaaattgccaagcctcagtatctacaatgatgcga
atgagacagatcctctcggaaatgagacatcctcgggatcata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_51439786_51440939
seq2: B6Ng01-083F13.b_43_1182 (reverse)

seq1  TTTATAATTTTTATTTTTTTAAATATTGTAGGCTGGAAAGATGGCTCAGG  50
      |||||||||||||||||||  || |||| | ||| ||||||||   ||| 
seq2  TTTATAATTTTTATTTTTT--AAAATTG-AAGCT-GAAAGATGCTCCAGA  46

seq1  AGTTCAG-AGCACTGGTCACTCTTCCAGAGGTCCTAAGTTCAATTCCCAG  99
       || ||| ||||||| ||| |||| ||||||| |||   |||| ||||||
seq2  GGTCCAGAAGCACTGTTCA-TCTT-CAGAGGT-CTA--GTCAA-TCCCAG  90

seq1  CAACCACATGGTGGCCCATGACCATCTATCCTAATGTCTATTGCTCTTCT  149
      ||||||||||||||||||||||||||| | |||||||||| ||||| |||
seq2  CAACCACATGGTGGCCCATGACCATCT-TTCTAATGTCTA-TGCTC-TCT  137

seq1  GCAGGCATGCATGCAGGTAGGCCACTGTATAGGTAATAATTGTATCTCAC  199
      ||||||||||||||| ||||||||||||||||||||||| ||||||||| 
seq2  GCAGGCATGCATGCA-GTAGGCCACTGTATAGGTAATAA-TGTATCTCAA  185

seq1  CTTATGGTCTAACTCCTTGCCATTGCCACGCTAGCCTACACTAGTATGAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGGTCTAACTCCTTGCCATTGCCACGCTAGCCTACACTAGTATGAC  235

seq1  TAACATACACTAAAGCTGACCTCCTGCCTCAGCTGTGCCTTTGCTTTGGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATACACTAAAGCTGACCTCCTGCCTCAGCTGTGCCTTTGCTTTGGA  285

seq1  CTTCACTTTAGAGGCAAAAGAGTCAAAAGTTTCTAAACTGTGGGGAGGCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACTTTAGAGGCAAAAGAGTCAAAAGTTTCTAAACTGTGGGGAGGCA  335

seq1  TCTTTCTGGTAAGAGACTATCTGTGGGTACAAAGACAGGCCACCCAACAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTGGTAAGAGACTATCTGTGGGTACAAAGACAGGCCACCCAACAT  385

seq1  GTCCAAACACAGGCTGGAGCCTAGCCCTAGCCCCCAGCACCCTGGGCACT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAAACACAGGCTGGAGCCTAGCCCTAGCCCCCAGCACCCTGGGCACT  435

seq1  TACCTCTCTGGTGTAGCCTAGCAAAAGGCTGGAAGTGCCGAGCATAGCTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCTCTGGTGTAGCCTAGCAAAAGGCTGGAAGTGCCGAGCATAGCTG  485

seq1  AGGGCCTCCAGCTGCTTCTCGGGGCCCCCAGCTAGGAGGCGGATAAAGTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCTCCAGCTGCTTCTCGGGGCCCCCAGCTAGGAGGCGGATAAAGTG  535

seq1  CAGCCGGTGCAGCTTGAACTCCAGCGAGCTGTTGAGCTCCAGCAGGCGCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCGGTGCAGCTTGAACTCCAGCGAGCTGTTGAGCTCCAGCAGGCGCT  585

seq1  GCCTGTGAGATACAGCCCATCTGGGGAGAGACAATACAGTGCAGTGGGTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGAGATACAGCCCATCTGGGGAGAGACAATACAGTGCAGTGGGTA  635

seq1  GTGGCTACAGAGGGCCCTAGACAGTGAATCCCTAAAGCATGGCTGGAATG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTACAGAGGGCCCTAGACAGTGAATCCCTAAAGCATGGCTGGAATG  685

seq1  AGTCAGGCACCCTTACTCCAGCGCAGGTCCTAGGTCTTGCTCGTGCAGAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGGCACCCTTACTCCAGCGCAGGTCCTAGGTCTTGCTCGTGCAGAG  735

seq1  CTTCCAAGATCCGATTCAACTCCAAGAAGGGCTGCTTGAAGTCCAGGTCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAAGATCCGATTCAACTCCAAGAAGGGCTGCTTGAAGTCCAGGTCC  785

seq1  ACATTCAATGTCGATTCCTGGGAAAGATGCAAGGCAGTGTCCCCAAATCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCAATGTCGATTCCTGGGAAAGATGCAAGGCAGTGTCCCCAAATCC  835

seq1  TTCATATATTAAAACTTCCTCAGCCAAAGGTTGGCTGGAAAAAGGCAAGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATATTAAAACTTCCTCAGCCAAAGGTTGGCTGGAAAAAGGCAAGG  885

seq1  AATTGTGGTCTGCTGGTAGCAAGAGCCCCTGTTGTTCGCTTTCCATCCTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTGGTCTGCTGGTAGCAAGAGCCCCTGTTGTTCGCTTTCCATCCTG  935

seq1  CAGAGGCTAAACATCATCACTGGGCAGACAGAGTGTGATTCTGCATAGTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCTAAACATCATCACTGGGCAGACAGAGTGTGATTCTGCATAGTC  985

seq1  CCCAGACCTGACACTGAAAGACCGGTGGGAGGCTAGCCTGCTCTATTCAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGACCTGACACTGAAAGACCGGTGGGAGGCTAGCCTGCTCTATTCAG  1035

seq1  CCAGACCTTATCTCAGAAGCCCAAGAAATTGGATGTGGTCACAACACTTG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACCTTATCTCAGAAGCCCAAGAAATTGGATGTGGTCACAACACTTG  1085

seq1  AGAGGCAGGAGGATTTCTGTGAGTTTGAGACCAGCCTAGCCTACACAGTG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAGGAGGATTTCTGTGAGTTTGAGACCAGCCTAGCCTACACAGTG  1135

seq1  AATTC  1154
      |||||
seq2  AATTC  1140