BAC Information

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BAC

Clone NameB6Ng01-083J12
Chromosome11 (Build37)
Map Location 117,282,716 - 117,421,912
singlet/doubletdoublet
Overlap genenone
Upstream gene1110014K08Rik, Qrich2, Prpsap1, LOC629971, Sphk1, Ube2o, Aanat, Rhbdf2, Cygb, OTTMUSG00000003947, 1810032O08Rik, St6galnac2, LOC634720, BC018473, St6galnac1, Mxra7, Jmjd6, 1110005A03Rik, LOC100043293, Sfrs2, Mfsd11, Mgat5b, LOC100042036, Sec14l1, Sept9, EG667423
Downstream geneTnrc6c, Tmc6, Tmc8, 6030468B19Rik, Syngr2, Tk1, Afmid, Birc5, LOC546519, Tha1, Socs3, Pgs1, Dnahc17, Pscd1, Usp36, Timp2, Ddc8, Lgals3bp, Cant1, C1qtnf1, D230014K01Rik, D11Bwg0517e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083J12.bB6Ng01-083J12.g
ACCDH897812DH897813
length1,1871,122
definitionDH897812|Mus musculus domesticus DNA, BAC clone: B6Ng01-083J12, 5' end.DH897813|Mus musculus domesticus DNA, BAC clone: B6Ng01-083J12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,420,703 - 117,421,912)(117,282,716 - 117,283,844)
sequence
gaattcacaaagtagccaaagacaagctacagtggaagaaaggtgtttgg
aagaagcacacacacacaccaccaccaccaccaccaacaacaacaacaaa
atacagatagaaacccagcatagcacaaggatttatttgcacagcatctt
cattgtgctccgactgataaggaatccagacgtgatgtcacagctcagag
tgcaagcatcattgccattgtatgggaaacctggccaaaatgtccctgga
aaaccaggagttgcctccaggagaaaggcctctgggttgtatttcaagtg
atggttgtggctttgcctgctttggctatgttcaaacatggccatggtta
aacaggataagagatgagcagcagatataggtctggaatggaagttgaca
caattccctctgtgatgtttgttagagtgaaagaacctcccaggcatgat
gcttgaggtgggaggggagccttagacagaaacagtacaatagatgagag
ctaaacaaatgggggtgctaacagcaagggggaggctccatttagagctg
agaagaacttaaagtgtgagaatcacacagagagaaactgagagaagata
gagatagctgctgtgagtgggatggagaggcagaatctcttcagggagca
gccttcagaacatctttcccagcactcctcccaacccctgccaccaccac
aagtctctgaacctaaatccaagaacaaaggcaagagctgactttaaata
accttttagggctggcagctagtagtcacactgcatgatttagttcagca
tagcatttggacacaggacatggaggaaccaggtaccacaaacctcttaa
ctctgtctctgagagagctggactcagacagtgggacctgggcctcaagg
tacaggcctgtgttctgacggcaggggaagacatggatcctggggcatag
ttatggtcactttctgtctctctgtctgctctcgctttctgtctctggtc
tctctctgggtctctctctcagaggcaccttcttctccagtaatctggag
tgagttctttacacgtgtgatcttgcagctttcttggctggatctgccag
gggttctcggctaaaccctattgcatggagcgcattagatctgggatgaa
atgaaagcatgtgttgagctgtttgctgagctgctga
gaattctgcaggcggtaggcagaagttccccacctcccagtcaggcaccg
tagggtaggtgacccttagttctgttgaatttaatgattaagacacacta
aatagggtgtttccccaactgtaggggttcaaccttaccttccatgtcct
cttgaggggagaccccgtggaatcagtactggcaggctatctggtatctg
gtatctggagagaagctgaggctgtcttctttggagtcagcacactgggg
gactgaatgcaggttctcatttaccagctgtgggatctcagccaagtctg
tggatggagccgtcagctctctctcctgtgtcttgatctctcagggcttc
tgataaactaggtagggtagaagatgtgggcagcttagcgggggctgggt
aggcgtcagcaccctccaggtggcactgagcactcatagaccttagtgat
tggttctcagcacctgctgaggaggaaaagctgctggagaacctagctca
cagaagaccgactcagatgaggatgctaaagtccctaacatcacaagaga
gccatggagggtaaaagagagcaggtatgtgcccaaaccctgggggtgcc
tgtacctcagatcatccgggcaagggtgttcttcacttcaggaaagacat
ttgtgaagggaggtcttcttgacatatgggtagcctcagcccggtcacct
gttccaccttttgactaatgactgacctgacatctttcagccggtgacct
tgctgctttctggtaatgcaaatatccttcagtgtcagacataataagaa
tcactatgagatgaacaagcagagcttaagttgagtgcagattaatgggg
ttttaatattcctattttaatcagctctttctggccgcactggtgggcaa
catgatgtagcagctaattattttttttttaaattgtgatggggatcttt
tcttatcaatttcatattaacgtgactgaagggagggtggtggataaatt
gagaaaataattctactaaataacccagagagatcagttaagaagccgat
atttctttcttcctctatagcaattctcaatgatcgagttgaagggtact
gtcaatcttctcactctgaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_117420703_117421912
seq2: B6Ng01-083J12.b_46_1232 (reverse)

seq1  TCAGCAAGCATCAGCAAACAAGCCTCAACAACTGCTTTTCATTTTCATCC  50
      ||||| ||| ||||||||||   |||||||  ||| ||||| ||||||||
seq2  TCAGC-AGC-TCAGCAAACA--GCTCAACACATGC-TTTCA-TTTCATCC  44

seq1  ACAGTATCCTGACTGCGCTCCCATGCATTAGGGTTTAGCTGTAGAACACC  100
       ||| |||   | |||||| ||||||| ||||||||||| | ||||| ||
seq2  -CAG-ATC--TAATGCGCT-CCATGCAATAGGGTTTAGCCG-AGAAC-CC  87

seq1  TTGGCAGATCCAGGCCAAGGAAAGCTGCAAAGATCACACCGTGTAACAGA  150
       ||||||||||| ||||| ||||||||| ||||||||| ||||||| |||
seq2  CTGGCAGATCCA-GCCAA-GAAAGCTGC-AAGATCACA-CGTGTAA-AGA  132

seq1  ACTCACTCCAGATTTACTGGGAGAAGAAAGGTGGCCTCTGAGAGAGAGAC  200
      |||||||||||| ||||| ||||||| ||||| |||||||||||||||||
seq2  ACTCACTCCAGA-TTACT-GGAGAAG-AAGGT-GCCTCTGAGAGAGAGAC  178

seq1  CCAGAGAGAGGAACAGAGACAGAAAGCGAGAGGCAGACAGAGAGACAGAA  250
      ||||||||| || |||||||||||||||||| ||||||||||||||||||
seq2  CCAGAGAGA-GACCAGAGACAGAAAGCGAGA-GCAGACAGAGAGACAGAA  226

seq1  AGTGACCATAACTATGCCCCAGGATCCATGTCTTCCCCTGCCGTCAGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACCATAACTATGCCCCAGGATCCATGTCTTCCCCTGCCGTCAGAAC  276

seq1  ACAGGCCTGTACCTTGAGG-CCAGGTCCCACTGTCTGAGTCCAGCTCTCT  349
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ACAGGCCTGTACCTTGAGGCCCAGGTCCCACTGTCTGAGTCCAGCTCTCT  326

seq1  CAGGGACAGAGTTAAGAGGTTTGTGGTACCTGGTTCCTCCATGTCCTGTG  399
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACAGAGTTAAGAGGTTTGTGGTACCTGGTTCCTCCATGTCCTGTG  376

seq1  TCCAAATGCTATGCTGAACTAAATCATGCAGTGTGACTACTAGCTGCCAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAATGCTATGCTGAACTAAATCATGCAGTGTGACTACTAGCTGCCAG  426

seq1  CCCTAAAAGGTTATTTAAAGTCAGCTCTTGCCTTTGTTCTTGGATTTAGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAAAGGTTATTTAAAGTCAGCTCTTGCCTTTGTTCTTGGATTTAGG  476

seq1  TTCAGAGACTTGTGGTGGTGGCAGGGGTTGGGAGGGGTGCTGGGAAAGAT  549
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTCAGAGACTTGTGGTGGTGGCAGGGGTTGGGAGGAGTGCTGGGAAAGAT  526

seq1  GTTCTGAAGGCTGCTCCCTGAAGAGATTCTGCCTCTCCATCCCACTCACA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGAAGGCTGCTCCCTGAAGAGATTCTGCCTCTCCATCCCACTCACA  576

seq1  GCAGCTATCTCTATCTTCTCTCAGTTTCTCTCTGTGTGATTCTCACACTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTATCTCTATCTTCTCTCAGTTTCTCTCTGTGTGATTCTCACACTT  626

seq1  TAAGTTCTTCTCAGCTCTAAATGGAGCCTCCCCCTTGCTGTTAGCACCCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTCTTCTCAGCTCTAAATGGAGCCTCCCCCTTGCTGTTAGCACCCC  676

seq1  CATTTGTTTAGCTCTCATCTATTGTACTGTTTCTGTCTAAGGCTCCCCTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTTTAGCTCTCATCTATTGTACTGTTTCTGTCTAAGGCTCCCCTC  726

seq1  CCACCTCAAGCATCATGCCTGGGAGGTTCTTTCACTCTAACAAACATCAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTCAAGCATCATGCCTGGGAGGTTCTTTCACTCTAACAAACATCAC  776

seq1  AGAGGGAATTGTGTCAACTTCCATTCCAGACCTATATCTGCTGCTCATCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGAATTGTGTCAACTTCCATTCCAGACCTATATCTGCTGCTCATCT  826

seq1  CTTATCCTGTTTAACCATGGCCATGTTTGAACATAGCCAAAGCAGGCAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCCTGTTTAACCATGGCCATGTTTGAACATAGCCAAAGCAGGCAAA  876

seq1  GCCACAACCATCACTTGAAATACAACCCAGAGGCCTTTCTCCTGGAGGCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAACCATCACTTGAAATACAACCCAGAGGCCTTTCTCCTGGAGGCA  926

seq1  ACTCCTGGTTTTCCAGGGACATTTTGGCCAGGTTTCCCATACAATGGCAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTGGTTTTCCAGGGACATTTTGGCCAGGTTTCCCATACAATGGCAA  976

seq1  TGATGCTTGCACTCTGAGCTGTGACATCACGTCTGGATTCCTTATCAGTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCTTGCACTCTGAGCTGTGACATCACGTCTGGATTCCTTATCAGTC  1026

seq1  GGAGCACAATGAAGATGCTGTGCAAATAAATCCTTGTGCTATGCTGGGTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCACAATGAAGATGCTGTGCAAATAAATCCTTGTGCTATGCTGGGTT  1076

seq1  TCTATCTGTATTTTGTTGTTGTTGTTGGTGGTGGTGGTGGTGGTGTGTGT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTGTATTTTGTTGTTGTTGTTGGTGGTGGTGGTGGTGGTGTGTGT  1126

seq1  GTGTGCTTCTTCCAAACACCTTTCTTCCACTGTAGCTTGTCTTTGGCTAC  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCTTCTTCCAAACACCTTTCTTCCACTGTAGCTTGTCTTTGGCTAC  1176

seq1  TTTGTGAATTC  1210
      |||||||||||
seq2  TTTGTGAATTC  1187

seq1: chr11_117282716_117283844
seq2: B6Ng01-083J12.g_70_1191

seq1  GAATTCTGCAGGCGGTAGGCAGAAGTTCCCCACCTCCCAGTCAGGCACCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCAGGCGGTAGGCAGAAGTTCCCCACCTCCCAGTCAGGCACCG  50

seq1  TAGGGTAGGTGACCCTTAGTTCTGTTGAATTTAATGATTAAGACACACTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTAGGTGACCCTTAGTTCTGTTGAATTTAATGATTAAGACACACTA  100

seq1  AATAGGGTGTTTCCCCAACTGTAGGGGTTCAACCTTACCTTCCATGTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGGTGTTTCCCCAACTGTAGGGGTTCAACCTTACCTTCCATGTCCT  150

seq1  CTTGAGGGGAGACCCCGTGGAATCAGTACTGGCAGGCTATCTGGTATCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGGGGAGACCCCGTGGAATCAGTACTGGCAGGCTATCTGGTATCTG  200

seq1  GTATCTGGAGAGAAGCTGAGGCTGTCTTCTTTGGAGTCAGCACACTGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTGGAGAGAAGCTGAGGCTGTCTTCTTTGGAGTCAGCACACTGGGG  250

seq1  GACTGAATGCAGGTTCTCATTTACCAGCTGTGGGATCTCAGCCAAGTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAATGCAGGTTCTCATTTACCAGCTGTGGGATCTCAGCCAAGTCTG  300

seq1  TGGATGGAGCCGTCAGCTCTCTCTCCTGTGTCTTGATCTCTCAGGGCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGGAGCCGTCAGCTCTCTCTCCTGTGTCTTGATCTCTCAGGGCTTC  350

seq1  TGATAAACTAGGTAGGGTAGAAGATGTGGGCAGCTTAGCGGGGGCTGGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAACTAGGTAGGGTAGAAGATGTGGGCAGCTTAGCGGGGGCTGGGT  400

seq1  AGGCGTCAGCACCCTCCAGGTGGCACTGAGCACTCATAGACCTTAGTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGTCAGCACCCTCCAGGTGGCACTGAGCACTCATAGACCTTAGTGAT  450

seq1  TGGTTCTCAGCACCTGCTGAGGAGGAAAAGCTGCTGGAGAACCTAGCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCTCAGCACCTGCTGAGGAGGAAAAGCTGCTGGAGAACCTAGCTCA  500

seq1  CAGAAGACCGACTCAGATGAGGATGCTAAAGTCCCTAACATCACAAGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGACCGACTCAGATGAGGATGCTAAAGTCCCTAACATCACAAGAGA  550

seq1  GCCATGGAGGGTAAAAGAGAGCAGGTATGTGCCCAAACCCTGGGGGTGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGGAGGGTAAAAGAGAGCAGGTATGTGCCCAAACCCTGGGGGTGCC  600

seq1  TGTACCTCAGATCATCCGGGCAAGGGTGTTCTTCACTTCAGGAAAGACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCTCAGATCATCCGGGCAAGGGTGTTCTTCACTTCAGGAAAGACAT  650

seq1  TTGTGAAGGGAGGTCTTCTTGACATATGGGTAGCCTCAGCCCGGTCACCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAAGGGAGGTCTTCTTGACATATGGGTAGCCTCAGCCCGGTCACCT  700

seq1  GTTCCACC-TTTGACTAATGACTGACCTGACATCTTTCAGCCGGTGACCT  749
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCACCTTTTGACTAATGACTGACCTGACATCTTTCAGCCGGTGACCT  750

seq1  TGCTGC-TTCTGGTAATGCAAATATCCTTCAGTGTCAGACATAATAAGAA  798
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCTTTCTGGTAATGCAAATATCCTTCAGTGTCAGACATAATAAGAA  800

seq1  TCACTATGAGATGAACAAGCAGAGCTTAAGTTGAGTGCAGATTAATGGGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTATGAGATGAACAAGCAGAGCTTAAGTTGAGTGCAGATTAATGGGG  850

seq1  TTTTAATATTCCTAATTTAATCAGTCCTTTCT-GTCGCACT-GTGGGCAA  896
      |||||||||||||| |||||||||  |||||| | |||||| ||||||||
seq2  TTTTAATATTCCTATTTTAATCAGCTCTTTCTGGCCGCACTGGTGGGCAA  900

seq1  CATGATGTAGCAGCTAATTA-TTTTTTTTTAAACTGTGATGGGGATCTTT  945
      |||||||||||||||||||| |||||||||||| ||||||||||||||||
seq2  CATGATGTAGCAGCTAATTATTTTTTTTTTAAATTGTGATGGGGATCTTT  950

seq1  CCTAATCAATTTCATATTTAACGTGACTGAAGGGAGGGTGGT-GATAAA-  993
       || |||||||||||| ||||||||||||||||||||||||| |||||| 
seq2  TCTTATCAATTTCATA-TTAACGTGACTGAAGGGAGGGTGGTGGATAAAT  999

seq1  TGAGAGAATAAATCTTACTAAATAGACACAAGAGAGATCAGTTAAAAAGA  1043
      ||||| ||||| || ||||||||| || | ||||||||||||||| ||| 
seq2  TGAGAAAATAATTC-TACTAAATA-AC-CCAGAGAGATCAGTTAAGAAG-  1045

seq1  AGGCCAGATAATTTCTTTCTTCCTTCTATAGCAAATTCCCCAGTGACAGA  1093
          | ||| ||||||||||||| ||||||||||  | | || |||  ||
seq2  ----CCGAT-ATTTCTTTCTTCC-TCTATAGCAA--TTCTCAATGATCGA  1087

seq1  GTGGAGGGGTACTGCCATACTGTCTCACTCTGAAAA  1129
      || || |||||||| ||  || ||||||||||||||
seq2  GTTGAAGGGTACTGTCAATCT-TCTCACTCTGAAAA  1122