BAC Information

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BAC

Clone NameB6Ng01-083L05
Chromosome11 (Build37)
Map Location 9,193,832 - 9,333,973
singlet/doubletdoublet
Overlap geneAbca13
Upstream geneLOC665380, Tns3, LOC638720, Pkd1l1, LOC624800, Hus1, Sunc1, OTTMUSG00000005148, Upp1, LOC626887, LOC100041469
Downstream geneLOC665435, LOC382483
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083L05.bB6Ng01-083L05.g
ACCDH897887DH897888
length1,0321,070
definitionDH897887|Mus musculus domesticus DNA, BAC clone: B6Ng01-083L05, 5' end.DH897888|Mus musculus domesticus DNA, BAC clone: B6Ng01-083L05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,193,832 - 9,194,875)(9,332,875 - 9,333,973)
sequence
gaattccattctctcggagctattggagattttccatgttaaaaatttac
ttgtgaaaactctgcagggattttggcataaggtactgctcttcatgtca
tcttctggaattcaaggtaatggcagcatcccagaactctgtcctactag
taccataaagcaaggtgctttgcaaatcatagaaaagctaaaatatgtca
attttacaaaattctcactgggtgaaaccattctggacaggctaggtaac
ttagacaggattcttagcctcactaaaggtacagagaaatctgtccaaaa
taatatttacttaaatttggaaaggttattcaaattgatttctgctactt
ggactttaagaaatagtactcattatctactctctccaatcacaaacttt
ctgaatggaaattatacaggttggagtttgtttaaaaacaatagaacaag
ttccaacattgaagaactgtggttggactttaaacagattcccaaagatc
taactagtaactggagcctaggacagttactttccgatattaacaaaaat
atccaaggtgcaggtcttcaaaacaccactgtgcaacttcctcaacttct
ggaactcctggattcatcaccattgaagacatcagaaattattgaaggtt
ttctatttctcataaaaccctggcttcgtgagtatgaaaatggagacttc
tttaggtttattcaaagtctactcaatgccgtggccagtgggaattcaac
tgatgtaagtaggttggccagggattttactatgtatttgggttatctca
gaaaccaatctagagaaggcaattttgatgttggctttttcagccatatg
ctagatcaagagcacctcactgatctcccagttgttcagcggcttcttga
aagcattgtgatgaattcagttagtagctttgcagcgctatctcagaaac
gcctccagtttcagcggcacgactcaaatagcagatctcatgatctcatc
tgagcacgcgcagtcaaaaacatgcgagctga

gaattcatggggatgttggggtatccaactatgaaaagtgggcatatggc
tgtgccctgcctcccagaggaaagagtatgattttattcctctacagtgt
gtcagacttggggaatgatccaagtgtaagaaggtagacacggttccatt
tatatagaattctagaataagtaaacaaattagtaagtaacaggtcagtg
gccacttgggagcttgggctaaaagatgacacagtacatattaaaaggga
aaagaaatgctccatatcttcaccatggtgtttgctctgacattagataa
atatgtcaaccctcactgaactacctgcataaccatgtgacactatacaa
aaactatgccttgagttattcaattagcaactcattgttataaccatttc
caaacctagttagggaatataataaggtaataaatgtagtgatctctcag
tatctttgggcattggattcagtacaattcttataccaaaattcagatag
tccagatttttgtacaaaaatgacagcatacatgcagtctatataatctt
tctatgtatttaaatcatctatatattatattgttgaacaaatactgaca
aagaaaaataatatctgtacatagggtagatacaatacttttcagagaat
tttgatctatgctaggaaagtccctggaaatggaatccatggacacagag
attcaactgtatcaatctgtgtgattctcaaagccttttgtttcaaatgg
taaagatccaggtgagtaatttgctctcagctccaagcactgctaataag
caagaagcaagcacttcagatgactctgaatgtactccaaatgtcactaa
aagccaagtagttactgaaccctgaaacacccagaccttcgtatttcatt
ctcgtcattcagccagacgagcacaccagactctcataaaatatgtgtgt
agcaaagtttgctgagtatgcttgcgtacccagaaatcccatgcagtcta
gaaggagagactgcagttctatctcagctgcaagtacaatgcaacatcca
ccttctcttccttttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_9193832_9194875
seq2: B6Ng01-083L05.b_47_1078

seq1  GAATTCCATTCTCTCGGAGCTATTGGAGATTTTCCATGTTAAAAATTTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTCTCTCGGAGCTATTGGAGATTTTCCATGTTAAAAATTTAC  50

seq1  TTGTGAAAACTCTGCAGGGATTTTGGCATAAGGTACTGCTCTTCATGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAAAACTCTGCAGGGATTTTGGCATAAGGTACTGCTCTTCATGTCA  100

seq1  TCTTCTGGAATTCAAGGTAATGGCAGCATCCCAGAACTCTGTCCTACTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGGAATTCAAGGTAATGGCAGCATCCCAGAACTCTGTCCTACTAG  150

seq1  TACCATAAAGCAAGGTGCTTTGCAAATCATAGAAAAGCTAAAATATGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATAAAGCAAGGTGCTTTGCAAATCATAGAAAAGCTAAAATATGTCA  200

seq1  ATTTTACAAAATTCTCACTGGGTGAAACCATTCTGGACAGGCTAGGTAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACAAAATTCTCACTGGGTGAAACCATTCTGGACAGGCTAGGTAAC  250

seq1  TTAGACAGGATTCTTAGCCTCACTAAAGGTACAGAGAAATCTGTCCAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACAGGATTCTTAGCCTCACTAAAGGTACAGAGAAATCTGTCCAAAA  300

seq1  TAATATTTACTTAAATTTGGAAAGGTTATTCAAATTGATTTCTGCTACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTTACTTAAATTTGGAAAGGTTATTCAAATTGATTTCTGCTACTT  350

seq1  GGACTTTAAGAAATAGTACTCATTATCTACTCTCTCCAATCACAAACTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTTAAGAAATAGTACTCATTATCTACTCTCTCCAATCACAAACTTT  400

seq1  CTGAATGGAAATTATACAGGTTGGAGTTTGTTTAAAAACAATAGAACAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATGGAAATTATACAGGTTGGAGTTTGTTTAAAAACAATAGAACAAG  450

seq1  TTCCAACATTGAAGAACTGTGGTTGGACTTTAAACAGATTCCCAAAGATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAACATTGAAGAACTGTGGTTGGACTTTAAACAGATTCCCAAAGATC  500

seq1  TAACTAGTAACTGGAGCCTAGGACAGTTACTTTCCGATATTAACAAAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAGTAACTGGAGCCTAGGACAGTTACTTTCCGATATTAACAAAAAT  550

seq1  ATCCAAGGTGCAGGTCTTCAAAACACCACTGTGCAACTTCCTCAACTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAGGTGCAGGTCTTCAAAACACCACTGTGCAACTTCCTCAACTTCT  600

seq1  GGAACTCCTGGATTCATCACCATTGAAGACATCAGAAATTATTGAAGGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTCCTGGATTCATCACCATTGAAGACATCAGAAATTATTGAAGGTT  650

seq1  TTCTATTTCTCATAAAACCCTGGCTTCGTGAGTATGAAAATGGAGACTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTTCTCATAAAACCCTGGCTTCGTGAGTATGAAAATGGAGACTTC  700

seq1  TTTAGGTTTATTCAAAGTCTACTCAATGCCGTGGCCAGTGGGAATTCAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGTTTATTCAAAGTCTACTCAATGCCGTGGCCAGTGGGAATTCAAC  750

seq1  TGATGTAAGTAGGTTGGCCAGGGATTTTACTATGTATTTGGGTTATCTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTAAGTAGGTTGGCCAGGGATTTTACTATGTATTTGGGTTATCTCA  800

seq1  GAAACCAATCTAGAGAAGGCAATTTTGATGTTGGCTTTTTCAGCCATATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCAATCTAGAGAAGGCAATTTTGATGTTGGCTTTTTCAGCCATATG  850

seq1  CTAGATCAAGAGCACCTCACTGATCTCCCAGTTGTTCAGCGGCTTCTTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATCAAGAGCACCTCACTGATCTCCCAGTTGTTCAGCGGCTTCTTGA  900

seq1  AAGCATTGTGATGAATTCAGTTAGTAGCTTTGCAGCGCTATCTCAGGAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AAGCATTGTGATGAATTCAGTTAGTAGCTTTGCAGCGCTATCTCA-GAAA  949

seq1  CGCCTCCCAGTTTCAGCGGCACCAACCTTCAAATAGCAGATCTCATGAAT  1000
      ||||| |||||||||||||||| |    ||||||||||||||||||| ||
seq2  CGCCT-CCAGTTTCAGCGGCACGA---CTCAAATAGCAGATCTCATG-AT  994

seq1  CTCATCTTGAAGCACGCGCAGTCCAAAAACCATGCGGAAGCTGA  1044
      |||||||   |||||||||||||  |||| ||||||  ||||||
seq2  CTCATCT--GAGCACGCGCAGTC--AAAAACATGCG--AGCTGA  1032


seq1: chr11_9332875_9333973
seq2: B6Ng01-083L05.g_68_1137 (reverse)

seq1  AAAAAAAAAGAAAGAAAAGAAAGGGTGGAATGTTTGCATTTGTACCTTGC  50
      |||||||||| |||| ||     ||||| ||| ||||| ||||| |||||
seq2  AAAAAAAAAGGAAGAGAA-----GGTGG-ATG-TTGCA-TTGTA-CTTGC  41

seq1  AGGCTGAGATAGAACTGGCAGTCTCTCCTTTCTTAGAACTTGCAAATTGG  100
      | |||||||||||||| |||||||||||||   ||||   ||||   |||
seq2  A-GCTGAGATAGAACT-GCAGTCTCTCCTT--CTAGA--CTGCA---TGG  82

seq1  GAATGTCTGAGTTACGCAAGCAATAACTCAGCAAACCTTTGCTAACACAC  150
      | || |||| | ||||||||||   |||||||||| ||||||| ||||||
seq2  G-ATTTCTG-GGTACGCAAGCA--TACTCAGCAAA-CTTTGCT-ACACAC  126

seq1  ATATTTTATGAGGAAGTCTTGGTGTGCTCGTCTGGCTGAATGACGAGAAT  200
      ||||||||||||  |||| |||||||||||||||||||||||||||||||
seq2  ATATTTTATGAG--AGTC-TGGTGTGCTCGTCTGGCTGAATGACGAGAAT  173

seq1  GAAATACGAAGGTTCTGGGTGTTTCAGGGTTCAGTAACTACTTGGCTTTT  250
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GAAATACGAAGG-TCTGGGTGTTTCAGGGTTCAGTAACTACTTGGCTTTT  222

seq1  AGTGACATTTGGAGTACATTCAGAGTCATCTGAAGTGCTTGCTTCTTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACATTTGGAGTACATTCAGAGTCATCTGAAGTGCTTGCTTCTTGCT  272

seq1  TATTAGCAGTGCTTGGAGCCTGAGAGCAAATTACTCACCTGGATCTTTAC  350
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TATTAGCAGTGCTTGGAG-CTGAGAGCAAATTACTCACCTGGATCTTTAC  321

seq1  CATTTGAAACAAAAGGCTTTGAGAATCACACAGATTGATACAGTTGAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGAAACAAAAGGCTTTGAGAATCACACAGATTGATACAGTTGAATC  371

seq1  TCTGTGTCCATGGATTCCATTTCCAGGGACTTTCCTAGCATAGATCAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTCCATGGATTCCATTTCCAGGGACTTTCCTAGCATAGATCAAAA  421

seq1  TTCTCTGAAAAGTATTGTATCTACCCTATGTACAGATATTATTTTTCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGAAAAGTATTGTATCTACCCTATGTACAGATATTATTTTTCTTT  471

seq1  GTCAGTATTTGTTCAACAATATAATATATAGATGATTTAAATACATAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTATTTGTTCAACAATATAATATATAGATGATTTAAATACATAGAA  521

seq1  AGATTATATAGACTGCATGTATGCTGTCATTTTTGTACAAAAATCTGGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTATATAGACTGCATGTATGCTGTCATTTTTGTACAAAAATCTGGAC  571

seq1  TATCTGAATTTTGGTATAAGAATTGTACTGAATCCAATGCCCAAAGATAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGAATTTTGGTATAAGAATTGTACTGAATCCAATGCCCAAAGATAC  621

seq1  TGAGAGATCACTACATTTATTACCTTATTATATTCCCTAACTAGGTTTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGATCACTACATTTATTACCTTATTATATTCCCTAACTAGGTTTGG  671

seq1  AAATGGTTATAACAATGAGTTGCTAATTGAATAACTCAAGGCATAGTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGTTATAACAATGAGTTGCTAATTGAATAACTCAAGGCATAGTTTT  721

seq1  TGTATAGTGTCACATGGTTATGCAGGTAGTTCAGTGAGGGTTGACATATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAGTGTCACATGGTTATGCAGGTAGTTCAGTGAGGGTTGACATATT  771

seq1  TATCTAATGTCAGAGCAAACACCATGGTGAAGATATGGAGCATTTCTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAATGTCAGAGCAAACACCATGGTGAAGATATGGAGCATTTCTTTT  821

seq1  CCCTTTTAATATGTACTGTGTCATCTTTTAGCCCAAGCTCCCAAGTGGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTTAATATGTACTGTGTCATCTTTTAGCCCAAGCTCCCAAGTGGCC  871

seq1  ACTGACCTGTTACTTACTAATTTGTTTACTTATTCTAGAATTCTATATAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACCTGTTACTTACTAATTTGTTTACTTATTCTAGAATTCTATATAA  921

seq1  ATGGAACCGTGTCTACCTTCTTACACTTGGATCATTCCCCAAGTCTGACA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAACCGTGTCTACCTTCTTACACTTGGATCATTCCCCAAGTCTGACA  971

seq1  CACTGTAGAGGAATAAAATCATACTCTTTCCTCTGGGAGGCAGGGCACAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTAGAGGAATAAAATCATACTCTTTCCTCTGGGAGGCAGGGCACAG  1021

seq1  CCATATGCCCACTTTTCATAGTTGGATACCCCAACATCCCCATGAATTC  1099
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATGCCCACTTTTCATAGTTGGATACCCCAACATCCCCATGAATTC  1070


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