BAC Information

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BAC

Clone NameB6Ng01-084L04
Chromosome11 (Build37)
Map Location 88,374,065 - 88,474,718
singlet/doubletdoublet
Overlap geneMsi2
Upstream geneSept4, Mtmr4, Hsf5, Rnf43, Supt4h1, Bzrap1, Mpo, Lpo, Mks1, Epx, Olfr462, Olfr463, Olfr464, Dynll2, Sfrs1, Vezf1, Cuedc1, Mrps23, 1700106J16Rik, LOC668793
Downstream geneLOC100038945, Akap1, Scpep1, OTTMUSG00000001305, 2210409E12Rik, Coil, LOC100039051, Trim25, Dgke, A930013B10Rik, Gm525, LOC100039114, Nog, LOC100039047, 4932411E22Rik, Ankfn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084L04.bB6Ng01-084L04.g
ACCDH898576DH898577
length1,1781,157
definitionDH898576|Mus musculus domesticus DNA, BAC clone: B6Ng01-084L04, 5' end.DH898577|Mus musculus domesticus DNA, BAC clone: B6Ng01-084L04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,473,523 - 88,474,718)(88,374,065 - 88,375,222)
sequence
gaattcagtatagtgtattgttttggttctgtttgccctgtacttttttt
ctaggtcagtttccttaacactatgggaggatcctacattgcttctccta
tccaattactaaccgtggcccagcctggttagcttccgagatcagacaat
gccgcgtgtgttcagtctgtagattctacattgcttttcaaagtccagac
tttcaaaggatggttatcccagacctcccagggattccgtttaacattca
ttctgtgaactgttggcatctgtcatgtgctttagggtagacttggcagc
taggacacaagtccccgaatactgtagggtgattatgttggtttccagac
ctctaccccctcaagtgagacttctaggtgctcctgaacattcctgtaca
gatgggactgttggccactgggtgcctagtatgtggtgtcttacaacatg
gggttcgagtttaatctggttaatgtatccttgctgggccgggagcgtta
tttgcaaacctcaagcacgattaaattaaagacaaggcttatgggaggag
gaggaagagaaaactagatagaaggtcaaacttttggagatggtggctgg
gtgcgtcacacttaagtccttggctgcgggtgactagcacccttccagac
atgttctggtcaggtaggtcagtaggaggctgtctgaagtatttcgctgt
ggtcacaggggtgtccaccctgtgggctcaggtgctatatgtggctgcac
gtagaccaggatattatgagtggcacccagcaccaaatcataaacctgtt
tcacacatggaattattatttttttctcttggtgggttaaggttaactca
tctgcaaggttctcaagcatgaactctgcagtgacaacgtcattgtgaaa
aggttgggcaagcctggctatccagcgaggactggagagaaagccttagc
gaggaatagtcgtggaagtgcaccgttgcttcagaagtgtttgacttttc
tagtcctgcggtgcgctcttgagcatgttgaaatagtgacagcataaagg
atgggtggttcagaatgactggacttcccagtgctgtgaagcagggcctc
aaggggttgggagcaaatcagaacaggcagagcttcttggatacttgaag
agtagtaaacatgtgaggaacgtatcac
gaattcatgttcccggtttacaaaccggtttccccatgatactagtttcc
acatgctgtcctgtgagcacagcgcctggtaccttcaaacactccaaccc
tgttgtctcgttttttctagaattaatgtcagtgaacaatgtgtttctgg
gatcgtatccttctgaagactccaggagaaccttcatggtgcctctctct
ttcctactgtctactgctggtcagccctctgcggtgagcggatcactagc
aggcttcacagagcattcctgcccacaggaggtctctcagcccaatttcc
atcctctgataaagctacgagtcactgcgacagggcttgccccagcccag
cacaacctcactaattatatctgcaaagaccctatgtcctaacaaagctt
ctttctgaagttccaggtggacatggactgggggacgtgccaccacttca
gccagaacgccaccaactcagcaggcaacttcacggcagtcacttaacat
gtccaagaaacccttctgctcaacatgggccccaaattccttcccctgga
gcaaggctttagcaggcactgactcggacgcccctcatataaacggggga
cttcggcctgggctaaaagtccaggagcctggagatttgtagtgtcagga
agcagggaagagaggctcatccagggcagtcagagcctgaggaggctgtg
ctgtagcaggggagagcatggcaggggacgatgtaatgtggtaaggcaga
agccattcggcccgggtcagatggggtcagcaggcaggaatgtggagaag
cgaacaaccgggaggtgctcagtagataaaatcctgctccagaaatgaac
cagaaagagctgtcaggagcagcgagggtctcccaggcaggaatgtgggg
gtggggaagccagacagtaggcaatgaggctcatctgaggggagtaaaga
gtgacaggcctgagccatttaaacacaaaggctagcagtggcacatgggg
gtggggggaagaggctaaagggcagagactagactggagtggggcagctg
cagtctgggaaggatggcttcgagggtaaatgtcctctgggaaggtggcc
agagtggatggactcaggacccgttcctggcttggagcaggtataagatg
aggtatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_88473523_88474718
seq2: B6Ng01-084L04.b_50_1227 (reverse)

seq1  GTGATAATGTTTCCTCACCATGTTTTCCTCATCTTCAACTAATCCAAGAA  50
      ||||||    ||||||| |||| ||| ||  ||||||| | |||||||||
seq2  GTGATA--CGTTCCTCA-CATG-TTTACTACTCTTCAAGT-ATCCAAGAA  45

seq1  GCTCTGCCTGGTTTTAATGGCTCTGCTCCCCACCCCTTGAGCCCCTGGCC  100
      |||||||||| | |     | | ||||||| |||||||||| |||||  |
seq2  GCTCTGCCTGTTCT-----GATTTGCTCCCAACCCCTTGAGGCCCTG--C  88

seq1  TCCACAACCACTGGGAAGTCCAGTCATCTGGAACCCACCCAATCCTGTAT  150
      | ||| | |||||||||||||||||||   ||| |||||| ||||| |||
seq2  TTCAC-AGCACTGGGAAGTCCAGTCATTCTGAA-CCACCC-ATCCTTTAT  135

seq1  GCTGTCACTATTTCAACATGCTC-AGAGCCGCACCCGCAGGACTAG-AAA  198
      ||||||||||||||||||||||| |||| |||| |||||||||||| |||
seq2  GCTGTCACTATTTCAACATGCTCAAGAG-CGCA-CCGCAGGACTAGAAAA  183

seq1  GTCAAACCACTCTGGAAGCAACGGTGCACTTCCACGGCTATTCCCTCGCT  248
      |||||| ||||   |||||||||||||||||||||| ||||| |||||||
seq2  GTCAAA-CACTTCTGAAGCAACGGTGCACTTCCACGACTATT-CCTCGCT  231

seq1  AAGGCTTTCTCTCCAGTCCTCGCTGGATAGCCAGGCTTGCCCAACCTTTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTTTCTCTCCAGTCCTCGCTGGATAGCCAGGCTTGCCCAACCTTTT  281

seq1  CACAATGACGTTGTCACCTGCAGAGTTCATGCTTGAGAACCTTGCAGATG  348
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CACAATGACGTTGTCA-CTGCAGAGTTCATGCTTGAGAACCTTGCAGATG  330

seq1  AGTTAACCTTAACCCACCAAGAGAAAAAAATAATAATTCCATGTGTGAAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAACCTTAACCCACCAAGAGAAAAAAATAATAATTCCATGTGTGAAA  380

seq1  CAGGTTTATGATTTGGTGCTGGGTGCCACTCATAATATCCTGGTCTACGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTTATGATTTGGTGCTGGGTGCCACTCATAATATCCTGGTCTACGT  430

seq1  GCAGCCACATATAGCACCTGAGCCCACAGGGTGGACACCCCTGTGACCAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCACATATAGCACCTGAGCCCACAGGGTGGACACCCCTGTGACCAC  480

seq1  AGCGAAATACTTCAGACAGCCTCCTACTGACCTACCTGACCAGAACATGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGAAATACTTCAGACAGCCTCCTACTGACCTACCTGACCAGAACATGT  530

seq1  CTGGAAGGGTGCTAGTCACCCGCAGCCAAGGACTTAAGTGTGACGCACCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGGGTGCTAGTCACCCGCAGCCAAGGACTTAAGTGTGACGCACCC  580

seq1  AGCCACCATCTCCAAAAGTTTGACCTTCTATCTAGTTTTCTCTTCCTCCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACCATCTCCAAAAGTTTGACCTTCTATCTAGTTTTCTCTTCCTCCT  630

seq1  CCTCCCATAAGCCTTGTCTTTAATTTAATCGTGCTTGAGGTTTGCAAATA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCATAAGCCTTGTCTTTAATTTAATCGTGCTTGAGGTTTGCAAATA  680

seq1  ACGCTCCCGGCCCAGCAAGGATACATTAACCAGATTAAACTCGAACCCCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTCCCGGCCCAGCAAGGATACATTAACCAGATTAAACTCGAACCCCA  730

seq1  TGTTGTAAGACACCACATACTAGGCACCCAGTGGCCAACAGTCCCATCTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTAAGACACCACATACTAGGCACCCAGTGGCCAACAGTCCCATCTG  780

seq1  TACAGGAATGTTCAGGAGCACCTAGAAGTCTCACTTGAGGGGGTAGAGGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGAATGTTCAGGAGCACCTAGAAGTCTCACTTGAGGGGGTAGAGGT  830

seq1  CTGGAAACCAACATAATCACCCTACAGTATTCGGGGACTTGTGTCCTAGC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAACCAACATAATCACCCTACAGTATTCGGGGACTTGTGTCCTAGC  880

seq1  TGCCAAGTCTACCCTAAAGCACATGACAGATGCCAACAGTTCACAGAATG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAGTCTACCCTAAAGCACATGACAGATGCCAACAGTTCACAGAATG  930

seq1  AATGTTAAACGGAATCCCTGGGAGGTCTGGGATAACCATCCTTTGAAAGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTAAACGGAATCCCTGGGAGGTCTGGGATAACCATCCTTTGAAAGT  980

seq1  CTGGACTTTGAAAAGCAATGTAGAATCTACAGACTGAACACACGCGGCAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACTTTGAAAAGCAATGTAGAATCTACAGACTGAACACACGCGGCAT  1030

seq1  TGTCTGATCTCGGAAGCTAACCAGGCTGGGCCACGGTTAGTAATTGGATA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGATCTCGGAAGCTAACCAGGCTGGGCCACGGTTAGTAATTGGATA  1080

seq1  GGAGAAGCAATGTAGGATCCTCCCATAGTGTTAAGGAAACTGACCTAGAA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGCAATGTAGGATCCTCCCATAGTGTTAAGGAAACTGACCTAGAA  1130

seq1  AAAAAGTACAGGGCAAACAGAACCAAAACAATACACTATACTGAATTC  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTACAGGGCAAACAGAACCAAAACAATACACTATACTGAATTC  1178

seq1: chr11_88374065_88375222
seq2: B6Ng01-084L04.g_67_1223

seq1  GAATTCATGTTCCCGGTTTACAAACCGGTTTCCCCATGATACTAGTTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTTCCCGGTTTACAAACCGGTTTCCCCATGATACTAGTTTCC  50

seq1  ACATGCTGTCCTGTGAGCACAGCGCCTGGTACCTTCAAACACTCCAACCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCTGTCCTGTGAGCACAGCGCCTGGTACCTTCAAACACTCCAACCC  100

seq1  TGTTGTCTCGTTTTTTCTAGAATTAATGTCAGTGAACAATGTGTTTCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTCTCGTTTTTTCTAGAATTAATGTCAGTGAACAATGTGTTTCTGG  150

seq1  GATCGTATCCTTCTGAAGACTCCAGGAGAACCTTCATGGTGCCTCTCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCGTATCCTTCTGAAGACTCCAGGAGAACCTTCATGGTGCCTCTCTCT  200

seq1  TTCCTACTGTCTACTGCTGGTCAGCCCTCTGCGGTGAGCGGATCACTAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTACTGTCTACTGCTGGTCAGCCCTCTGCGGTGAGCGGATCACTAGC  250

seq1  AGGCTTCACAGAGCATTCCTGCCCACAGGAGGTCTCTCAGCCCAATTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTCACAGAGCATTCCTGCCCACAGGAGGTCTCTCAGCCCAATTTCC  300

seq1  ATCCTCTGATAAAGCTACGAGTCACTGCGACAGGGCTTGCCCCAGCCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCTGATAAAGCTACGAGTCACTGCGACAGGGCTTGCCCCAGCCCAG  350

seq1  CACAACCTCACTAATTATATCTGCAAAGACCCTATGTCCTAACAAAGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACCTCACTAATTATATCTGCAAAGACCCTATGTCCTAACAAAGCTT  400

seq1  CTTTCTGAAGTTCCAGGTGGACATGGACTGGGGGACGTGCCACCACTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGAAGTTCCAGGTGGACATGGACTGGGGGACGTGCCACCACTTCA  450

seq1  GCCAGAACGCCACCAACTCAGCAGGCAACTTCACGGCAGTCACTTAACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAACGCCACCAACTCAGCAGGCAACTTCACGGCAGTCACTTAACAT  500

seq1  GTCCAAGAAACCCTTCTGCTCAACATGGGCCCCAAATTCCTTCCCCTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAAGAAACCCTTCTGCTCAACATGGGCCCCAAATTCCTTCCCCTGGA  550

seq1  GCAAGGCTTTAGCAGGCACTGACTCGGACGCCCCTCATATAAACGGGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGCTTTAGCAGGCACTGACTCGGACGCCCCTCATATAAACGGGGGA  600

seq1  CTTCGGCCTGGGCTAAAAGTCCAGGAGCCTGGAGATTTGTAGTGTCAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGGCCTGGGCTAAAAGTCCAGGAGCCTGGAGATTTGTAGTGTCAGGA  650

seq1  AGCAGGGAAGAGAGGCTCATCCAGGGCAGTCAGAGCCTGAGGAGGCTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGGAAGAGAGGCTCATCCAGGGCAGTCAGAGCCTGAGGAGGCTGTG  700

seq1  CTGTAGCAGGGGAGAGCATGGCAGGGGACGATGTAATGTGGTAAGGCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGCAGGGGAGAGCATGGCAGGGGACGATGTAATGTGGTAAGGCAGA  750

seq1  AGCCATTCGGCCCGGGTCAGGATGGGGTCAGCAGGCAGGAATGTGGAGAA  800
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGCCATTCGGCCCGGGTCA-GATGGGGTCAGCAGGCAGGAATGTGGAGAA  799

seq1  GCGAACAACC-GGAGGTGCTCAGTAGATAAAATCCTGCTCCAGAAATGAA  849
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GCGAACAACCGGGAGGTGCTCAGTAGATAAAATCCTGCTCCAGAAATGAA  849

seq1  CCAGAAAGAGCTGTCAGGAACAGCGAGGTTCTCCCAGGCAGGAATGTGGG  899
      ||||||||||||||||||| |||||||| |||||||||||||||||||||
seq2  CCAGAAAGAGCTGTCAGGAGCAGCGAGGGTCTCCCAGGCAGGAATGTGGG  899

seq1  G--TGGGAAGCCAGACAGTAGGCAATGAGGCCCATCTGAGGAGAGTAAAG  947
      |   ||||||||||||||||||||||||||| ||||||||| ||||||||
seq2  GGTGGGGAAGCCAGACAGTAGGCAATGAGGCTCATCTGAGGGGAGTAAAG  949

seq1  AGTGACAAGCCTGAGCCATTTAAACACAAAAGCCTAGCAGTGGCAACAT-  996
      ||||||| ||||||||||||||||||| |||| ||||||||||| |||| 
seq2  AGTGACAGGCCTGAGCCATTTAAACAC-AAAGGCTAGCAGTGGC-ACATG  997

seq1  GGGGTGGGGGAAGAAGGCTACA-GGCAGAGACTAGACT-GAGTGGGGCAG  1044
      |||||||||| |  |||||| | ||||||||||||||| |||||||||||
seq2  GGGGTGGGGGGAAGAGGCTAAAGGGCAGAGACTAGACTGGAGTGGGGCAG  1047

seq1  CTGCAGCCTGAGAAGGAAGGGGCTCCAAGGGTAAATGT-CTCTGGAAAAG  1093
      |||||| ||| ||||||   |||| | ||||||||||| ||||||  |||
seq2  CTGCAGTCTGGGAAGGA--TGGCTTCGAGGGTAAATGTCCTCTGG-GAAG  1094

seq1  GTGGCCAGAGTGGATGGAGCTCAAGACCCG-TCCT-GCTT-GAGCAGTGT  1140
      |||||||||||||||||| |||| |||||| |||| |||| |||||| ||
seq2  GTGGCCAGAGTGGATGGA-CTCAGGACCCGTTCCTGGCTTGGAGCAG-GT  1142

seq1  ATTAAAGATTGAGGTATT  1158
      ||  |||| |||||||||
seq2  AT--AAGA-TGAGGTATT  1157