BAC Information

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BAC

Clone NameB6Ng01-085I23
Chromosome11 (Build37)
Map Location 63,120,952 - 63,238,704
singlet/doubletdoublet
Overlap geneLOC100042799
Upstream geneTtc19, Ncor1, Pigl, Prr6, Ubb, Trpv2, 2410006H16Rik, BC046404, BC025076, Zfp287, LOC626482, LOC100042766, Zfp286, Trim16, Fbxw10, Fam18b, Cdrt4, Tekt3, Pmp22, LOC433423
Downstream geneLOC100041690, LOC654442, LOC668297, Hs3st3b1, Cox10, 2810001G20Rik, EG544785
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085I23.bB6Ng01-085I23.g
ACCDH899202DH899203
length4991,166
definitionDH899202|Mus musculus domesticus DNA, BAC clone: B6Ng01-085I23, 5' end.DH899203|Mus musculus domesticus DNA, BAC clone: B6Ng01-085I23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,238,200 - 63,238,704)(63,120,952 - 63,122,104)
sequence
ttgccttaataaagatgtagaaagcatttttccactgaaagaagtgatat
atatataaatatatatatgcatacacacacacacacacacacacacacac
acacacacacacacacacatatatatatatattgtttctatgaatacact
gttgctctcttcagacacactagacaaggacatcggatcccatgtacaaa
tggttgtgagccaccatgtggttgctgggaattgaactcaggacctctgg
aagagcagtcagtgctcttaaccactgagccatctctccagcccatgatt
tgatttcttaactgttaccatctttgctcatgaggggtcagcaggcccaa
gaatgaatatgtgaactgctggaagttggactatctgctggtgttagaga
cctatttccccttagccctcagttatgtgctgtaaatatgactttttcta
atgaggttaaactggtgacatttcaatgggagctcataaaaaaaataaa
gaattctcactacacccaaatccatttctccaaccttatgttaactataa
ctgtttttgtctctgtttaagttcatgattaagtagccagtaggtgggtc
ccaaatctcataaacactaaacagcctcagcaggttatatttatatattc
atgccaggcctagtgtctctctctctgcctgcctgcttgcctgccaccat
gctttctgccataatgattagggactaaccagaaaccataagcaacccct
caattaaatgctttcttttataaatattgccttggtcatggtgtcttttc
agagcactagaacactcactaagatacccttgctctagtggactgcttca
catccatgtgcgtgcaggtagactaattggacatatttctaaaaatgtta
agaataataaaaaataaataaataaactatgacttttaaaaaaacttagc
tatcaagttcttaagtagcattagagtgtgggatcatttttccccacata
gaaaggcctgcttggttaccctgaaggatcaatgaatgctcatttcagtt
gcatcagttggtcattcaaaattctcattgaacttgagctgaaaaggaaa
ttaagtagttataccttccctgcacatatgtatacaaactaaaatttcca
aacaaaatgaacctcatgaatatatttaaaatttttataatgtgtatatt
aagataatgagactacatggccatcatattttaaatttatacagctattg
gaacagcagtgttctttaagaagacatgacacttatgtgtatttgataaa
cctgggtttataaccacaggcaatttttttcaccttaggaatcataatga
gacactcatagaagtaatatcaatactgaaatgagatatctgtaatatct
attgaattgtcttgacaggtgacaaggtacagtgtaatcatcactaaaga
taaattgtcacagacaacattttttattttcatgttttttagagtattta
aataatctttttttgtagttaaacacattcacagagtcacattccatagg
ccagggatgggtgtaggattattaatataaagtgtgtttcaggacaggtg
aaaattggccatcaagcctggggagaaagcctcatcattaagtattggaa
ttcacatcttaattat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_63238200_63238704
seq2: B6Ng01-085I23.b_50_554 (reverse)

seq1  TTTATTTTTTTTCTGAGCTCCCATTGAAATGTCACCAGTTTAACCTCATT  50
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTTTTTATGAGCTCCCATTGAAATGTCACCAGTTTAACCTCATT  50

seq1  AGAAAAAGTCATATTTACAGCACATAACTGAGGGCTAAGGGGAAATAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAGTCATATTTACAGCACATAACTGAGGGCTAAGGGGAAATAGGT  100

seq1  CTCTAACACCAGCAGATAGTCCAACTTCCAGCAGTTCACATATTCATTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAACACCAGCAGATAGTCCAACTTCCAGCAGTTCACATATTCATTCT  150

seq1  TGGGCCTGCTGACCCCTCATGAGCAAAGATGGTAACAGTTAAGAAATCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCTGCTGACCCCTCATGAGCAAAGATGGTAACAGTTAAGAAATCAA  200

seq1  ATCATGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTC  250

seq1  CAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCAT  300

seq1  TTGTACATGGGATCCGATGTCCTTGTCTAGTGTGTCTGAAGAGAGCAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACATGGGATCCGATGTCCTTGTCTAGTGTGTCTGAAGAGAGCAACA  350

seq1  GTGTATTCATAGAAACAATATATATATATATGTGTGTGTGTGTGTGTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATTCATAGAAACAATATATATATATATGTGTGTGTGTGTGTGTGTG  400

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTATGCATATATATATTTATATATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTATGCATATATATATTTATATATA  450

seq1  TATCACTTCTTTCAGTGGAAAAATGCTTTCTACATCTTTATTAAGGCAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACTTCTTTCAGTGGAAAAATGCTTTCTACATCTTTATTAAGGCAAG  500

seq1  AATTC  505
      |||||
seq2  AATTC  505

seq1: chr11_63120952_63122104
seq2: B6Ng01-085I23.g_71_1236

seq1  GAATTCTCACTACACCCAAATCCATTTCTCCAACCTTATGTTAACTATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACTACACCCAAATCCATTTCTCCAACCTTATGTTAACTATAA  50

seq1  CTGTTTTTGTCTCTGTTTAAGTTCATGATTAAGTAGCCAGTAGGTGGGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTTGTCTCTGTTTAAGTTCATGATTAAGTAGCCAGTAGGTGGGTC  100

seq1  CCAAATCTCATAAACACTAAACAGCCTCAGCAGGTTATATTTATATATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATCTCATAAACACTAAACAGCCTCAGCAGGTTATATTTATATATTC  150

seq1  ATGCCAGGCCTAGTGTCTCTCTCTCTGCCTGCCTGCTTGCCTGCCACCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAGGCCTAGTGTCTCTCTCTCTGCCTGCCTGCTTGCCTGCCACCAT  200

seq1  GCTTTCTGCCATAATGATTAGGGACTAACCAGAAACCATAAGCAACCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTGCCATAATGATTAGGGACTAACCAGAAACCATAAGCAACCCCT  250

seq1  CAATTAAATGCTTTCTTTTATAAATATTGCCTTGGTCATGGTGTCTTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAAATGCTTTCTTTTATAAATATTGCCTTGGTCATGGTGTCTTTTC  300

seq1  AGAGCACTAGAACACTCACTAAGATACCCTTGCTCTAGTGGACTGCTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCACTAGAACACTCACTAAGATACCCTTGCTCTAGTGGACTGCTTCA  350

seq1  CATCCATGTGCGTGCAGGTAGACTAATTGGACATATTTCTAAAAATGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCATGTGCGTGCAGGTAGACTAATTGGACATATTTCTAAAAATGTTA  400

seq1  AGAATAATAAAAAATAAATAAATAAACTATGACTTTTAAAAAAACTTAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAATAAAAAATAAATAAATAAACTATGACTTTTAAAAAAACTTAGC  450

seq1  TATCAAGTTCTTAAGTAGCATTAGAGTGTGGGATCATTTTTCCCCACATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAGTTCTTAAGTAGCATTAGAGTGTGGGATCATTTTTCCCCACATA  500

seq1  GAAAGGCCTGCTTGGTTACCCTGAAGGATCAATGAATGCTCATTTCAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGCCTGCTTGGTTACCCTGAAGGATCAATGAATGCTCATTTCAGTT  550

seq1  GCATCAGTTGGTCATTCAAAATTCTCATTGAACTTGAGCTGAAAAGGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAGTTGGTCATTCAAAATTCTCATTGAACTTGAGCTGAAAAGGAAA  600

seq1  TTAAGTAGTTATACCTTCCCTGCACATATGTATACAAACTAAAATTTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTAGTTATACCTTCCCTGCACATATGTATACAAACTAAAATTTCCA  650

seq1  AACAAAATGAACCTCATGAATATATTTAAAATTTTTATAATGTGTATATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAATGAACCTCATGAATATATTTAAAATTTTTATAATGTGTATATT  700

seq1  AAGATAATGAGACTACATGGCCATCATATTTTAAATTTATACAGCTATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAATGAGACTACATGGCCATCATATTTTAAATTTATACAGCTATTG  750

seq1  GAACAGCAGTGTTCTTTAAGAAGACATGACACTTATGTGTA-TTGATAAA  799
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GAACAGCAGTGTTCTTTAAGAAGACATGACACTTATGTGTATTTGATAAA  800

seq1  CCTGGGTTTATAACCACAGGCAA-TTCTTTCACCTTAGGAATCATAATGA  848
      ||||||||||||||||||||||| || |||||||||||||||||||||||
seq2  CCTGGGTTTATAACCACAGGCAATTTTTTTCACCTTAGGAATCATAATGA  850

seq1  GACACTCATAGAAGTAATATCAATACTGAAATGAGATATCTGTAATATCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTCATAGAAGTAATATCAATACTGAAATGAGATATCTGTAATATCT  900

seq1  ATTGAATTGTCTTGAACAGGTGACAAGGTACAGTGTAATCATCACTAAAG  948
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ATTGAATTGTCTTG-ACAGGTGACAAGGTACAGTGTAATCATCACTAAAG  949

seq1  ATAAATTGTCACAGACAACATCTTT--ATTTCATGTTTTTAAGAGTATTT  996
      ||||||||||||||||||||| |||   |||||||||||| |||||||||
seq2  ATAAATTGTCACAGACAACATTTTTTATTTTCATGTTTTTTAGAGTATTT  999

seq1  AAAT-ATC-TATTATGTAG-TAAACACATTCACAGAGTTCACATTCCATA  1043
      |||| ||| | || ||||| ||||||||||||||||| ||||||||||||
seq2  AAATAATCTTTTTTTGTAGTTAAACACATTCACAGAG-TCACATTCCATA  1048

seq1  GG-CAGGGAT-GGTGTAGGATTATAAATAAAA---GTGGTTCAGGACAAG  1088
      || ||||||| ||||||||||||| |||| ||   ||| ||||||||| |
seq2  GGCCAGGGATGGGTGTAGGATTATTAATATAAAGTGTGTTTCAGGACAGG  1098

seq1  TGAAAATTGGCCATCAAGC--TGGGAGAA--GCTCATCAATAAGTTATTG  1134
      |||||||||||||||||||   |||||||   ||||||| |||||  | |
seq2  TGAAAATTGGCCATCAAGCCTGGGGAGAAAGCCTCATCATTAAGTATTGG  1148

seq1  AATTCAACATTCTAATTAT  1153
      ||||| ||||  |||||||
seq2  AATTC-ACATCTTAATTAT  1166