BAC Information

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BAC

Clone NameB6Ng01-086I14
Chromosome11 (Build37)
Map Location 97,513,553 - 97,679,183
singlet/doubletdoublet
Overlap geneMllt6, Mel13, Pcgf2, Psmb3, Pip5k2b, 2810474C18Rik, Ccdc49, LOC100040708, 1700001P01Rik, Rpl23, Lasp1
Upstream geneSkap1, Snx11, Cbx1, LOC629750, Nfe2l1, Copz2, LOC100040373, LOC665436, Cdk5rap3, Atad4, Pnpo, D030028A08Rik, Sp2, Sp6, Scrn2, Lrrc46, Mrpl10, Osbpl7, Tbx21, Tbkbp1, Kpnb1, Npepps, EG665490, Mrpl45, Gpr179, Socs7, 4933428G20Rik, P140, 2410003L11Rik, E130012A19Rik
Downstream geneB230217C12Rik, Fbxo47, Plxdc1, Arl5c, Cacnb1, Rpl19, Stac2, Fbxl20, LOC665606, Pparbp, LOC666613, LOC100039982, Crkrs, Neurod2, Ppp1r1b, Stard3, Tcap, Pnmt, Perld1, Erbb2, 1810046J19Rik, Grb7, Ikzf3, Zpbp2, Ormdl3, Gm12, LOC100040117, Gsdm3, Gsdm2, Gsdm1, Psmd3, Csf3, Thrap4, Thra, Nr1d1, 4121402D02Rik, Casc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086I14.bB6Ng01-086I14.g
ACCDH899904DH899905
length6781,104
definitionDH899904|Mus musculus domesticus DNA, BAC clone: B6Ng01-086I14, 5' end.DH899905|Mus musculus domesticus DNA, BAC clone: B6Ng01-086I14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,678,506 - 97,679,183)(97,513,553 - 97,514,664)
sequence
gaattccatctcaaactacataggtaatgccagcccagccaaggatacag
tgagatcccggctcaaaacaacaacaacaacaaaagacaaaagacaaaaa
aaaaaaaaagagaagccaacaaccaaagagggagccccacaaaagcagct
cttccctttttgacaatacgattgtgagaactgatacacacagggcctcc
tgcctctcagtaagaaactaagagaacgttatggcagcccacagcagacc
ctagagtctaggaacctccgagtctgtgtgtggagagcagggcagcccta
caaacagcaagggcagccctgatgcccctgtacacaggcacgggtagtag
ggctggctggctgccttctgatatcagccccgccctacaggggtcagatt
ccagaagcaaaaaaaaaaaaaagctgaggtggagctctcatgggctccca
agggcaagtgggttgggtttctccttaaagtagaatgtagaaagaaagaa
aaaagaagaggaggaaaaagacaaaaggggagggaaaaaaagaaaaggag
gaggagaaggaagaagaggaggaggaggaggaggagaaggaagacgagtg
gagaagatggaggcattctctctcttggcccaggtttctggccctctgac
ccctctccctgcctgttggaccattcca
gaattccatcttccagtcctctctgcaaacatttactgagaatgtagtac
ctgccaggcaatctggggctatacacaacctccaaagatttccctcttcc
tggtactcacataggaaaggaggggaagtgtcatctaagaacaggagctt
aagggaatgggaacgcaggagtgcagtctccgttctattgtctacctagg
ctgaggctgtagtgcagctggctcagtgcttgtctagcaggatgtcctgg
gttcaatacccacatcgagtaaaactgagcatggtacttcatgcttataa
ctacagcactgaggaggtggggactagaggttcagaagaaatccaaggtc
agcctcacgttgaatgctggttagccagttttgactacataagatccctc
taaatatatatatatctttgagagaaggccctacttgatagcccaggttg
gcctacaactcctaattctcctgccttagcctcccaagggctaggacagt
tttgggtacaatgttaaatagaatttaggaaggtcttgatggaggaacat
tgtaaaaaaaattagtgaaaaagccagcttggctgtagcctagtgtggat
gaagtctaaaggacatgccagagggattggggcagcaggttacacgaggc
ctttcaggtttctttttgaacatgacaggaattttgtgatcatgcattgg
catacattcatatgaacacacacatacacacaaataaaactagatcttgg
gaactggagacctggaactggcattacagatggttgtgagacaccatgta
ggtgctgggaaccgaacctgggtcctctgcaagagcactaagcactctta
atcatttctccagccttttattttattaatgaatttatttattttttgaa
gcagctttctctggctgtcctggatctctgtggatcagttggcttctaag
tcacagagatccattgcctctgcctcctgaatgctggactaaaggcgtaa
ggcgtgtgggaagccacatgtgccgttgcagagtggcactgactactgct
gccaccacgcatagtttgacaaccacaaatgtgtaccatatgcagtaagg
tttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_97678506_97679183
seq2: B6Ng01-086I14.b_44_721 (reverse)

seq1  TGGAATGGTCCAGCAGGCAGGGAGAGGGGTCAGAGGGCCAGATGCCTGGG  50
      |||||||||||| |||||||||||||||||||||||||||||  ||||||
seq2  TGGAATGGTCCAACAGGCAGGGAGAGGGGTCAGAGGGCCAGAAACCTGGG  50

seq1  CCAAGCGAGAGATTGCCTCCTTCTTCTCCACTCGTCTTCCTTCTCCTCCT  100
      ||||| |||||| ||||||| |||||||||||||||||||||||||||||
seq2  CCAAGAGAGAGAATGCCTCCATCTTCTCCACTCGTCTTCCTTCTCCTCCT  100

seq1  CCTCCTCCTCCTCTTCTTCCTTCTCCTCCTCCTTTTCTTTTTTTCCCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCCTCCTCTTCTTCCTTCTCCTCCTCCTTTTCTTTTTTTCCCTCC  150

seq1  CCTTTTGTCTTTTTCCTCCTCTTCTTTTTTCTTTCTTTCTACATTCTACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTGTCTTTTTCCTCCTCTTCTTTTTTCTTTCTTTCTACATTCTACT  200

seq1  TTAAGGAGAAACCCAACCCACTTGCCCTTGGGAGCCCATGAGAGCTCCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGAGAAACCCAACCCACTTGCCCTTGGGAGCCCATGAGAGCTCCAC  250

seq1  CTCAGCTTTTTTTTTTTTTTGCTTCTGGAATCTGACCCCTGTAGGGCGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCTTTTTTTTTTTTTTGCTTCTGGAATCTGACCCCTGTAGGGCGGG  300

seq1  GCTGATATCAGAAGGCAGCCAGCCAGCCCTACTACCCGTGCCTGTGTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATATCAGAAGGCAGCCAGCCAGCCCTACTACCCGTGCCTGTGTACA  350

seq1  GGGGCATCAGGGCTGCCCTTGCTGTTTGTAGGGCTGCCCTGCTCTCCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCATCAGGGCTGCCCTTGCTGTTTGTAGGGCTGCCCTGCTCTCCACA  400

seq1  CACAGACTCGGAGGTTCCTAGACTCTAGGGTCTGCTGTGGGCTGCCATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGACTCGGAGGTTCCTAGACTCTAGGGTCTGCTGTGGGCTGCCATAA  450

seq1  CGTTCTCTTAGTTTCTTACTGAGAGGCAGGAGGCCCTGTGTGTATCAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCTCTTAGTTTCTTACTGAGAGGCAGGAGGCCCTGTGTGTATCAGTT  500

seq1  CTCACAATCGTATTGTCAAAAAGGGAAGAGCTGCTTTTGTGGGGCTCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAATCGTATTGTCAAAAAGGGAAGAGCTGCTTTTGTGGGGCTCCCT  550

seq1  CTTTGGTTGTTGGCTTCTCTTTTTTTTTTTTTTGTCTTTTGTCTTTTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGTTGTTGGCTTCTCTTTTTTTTTTTTTTGTCTTTTGTCTTTTGTT  600

seq1  GTTGTTGTTGTTTTGAGCCGGGATCTCACTGTATCCTTGGCTGGGCTGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTGTTGTTTTGAGCCGGGATCTCACTGTATCCTTGGCTGGGCTGGC  650

seq1  ATTACCTATGTAGTTTGAGATGGAATTC  678
      ||||||||||||||||||||||||||||
seq2  ATTACCTATGTAGTTTGAGATGGAATTC  678

seq1: chr11_97513553_97514664
seq2: B6Ng01-086I14.g_68_1171

seq1  GAATTCCATCTTCCAGTCCTCTCTGCAAACATTTACTGAGAATGTAGTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCTTCCAGTCCTCTCTGCAAACATTTACTGAGAATGTAGTAC  50

seq1  CTGCCAGGCAATCTGGGGCTATACACAACCTCCAAAGATTTCCCTCTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAGGCAATCTGGGGCTATACACAACCTCCAAAGATTTCCCTCTTCC  100

seq1  TGGTACTCACATAGGAAAGGAGGGGAAGTGTCATCTAAGAACAGGAGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACTCACATAGGAAAGGAGGGGAAGTGTCATCTAAGAACAGGAGCTT  150

seq1  AAGGGAATGGGAACGCAGGAGTGCAGTCTCCGTTCTATTGTCTACCTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAATGGGAACGCAGGAGTGCAGTCTCCGTTCTATTGTCTACCTAGG  200

seq1  CTGAGGCTGTAGTGCAGCTGGCTCAGTGCTTGTCTAGCAGGATGTCCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGCTGTAGTGCAGCTGGCTCAGTGCTTGTCTAGCAGGATGTCCTGG  250

seq1  GTTCAATACCCACATCGAGTAAAACTGAGCATGGTACTTCATGCTTATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAATACCCACATCGAGTAAAACTGAGCATGGTACTTCATGCTTATAA  300

seq1  CTACAGCACTGAGGAGGTGGGGACTAGAGGTTCAGAAGAAATCCAAGGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGCACTGAGGAGGTGGGGACTAGAGGTTCAGAAGAAATCCAAGGTC  350

seq1  AGCCTCACGTTGAATGCTGGTTAGCCAGTTTTGACTACATAAGATCCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCACGTTGAATGCTGGTTAGCCAGTTTTGACTACATAAGATCCCTC  400

seq1  TAAATATATATATATCTTTGAGAGAAGGCCCTACTTGATAGCCCAGGTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATATATATATCTTTGAGAGAAGGCCCTACTTGATAGCCCAGGTTG  450

seq1  GCCTACAACTCCTAATTCTCCTGCCTTAGCCTCCCAAGGGCTAGGACAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTACAACTCCTAATTCTCCTGCCTTAGCCTCCCAAGGGCTAGGACAGT  500

seq1  TTTGGGTACAATGTTAAATAGAATTTAGGAAGGTCTTGATGGAGGAACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGTACAATGTTAAATAGAATTTAGGAAGGTCTTGATGGAGGAACAT  550

seq1  TGTAAAAAAAATTAGTGAAAAAGCCAGCTTGGCTGTAGCCTAGTGTGGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAAAAAATTAGTGAAAAAGCCAGCTTGGCTGTAGCCTAGTGTGGAT  600

seq1  GAAGTCTAAAGGACATGCCAGAGGGATTGGGGCAGCAGGTTACACGAGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCTAAAGGACATGCCAGAGGGATTGGGGCAGCAGGTTACACGAGGC  650

seq1  CTTTCAGGTTTCTTTTTGAACATGACAGGAATTTTGTGATCATGCATTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGGTTTCTTTTTGAACATGACAGGAATTTTGTGATCATGCATTGG  700

seq1  CATACATTCATATGAACACACACATACACACAAATAAAACTAGATCTTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATTCATATGAACACACACATACACACAAATAAAACTAGATCTTGG  750

seq1  GAACTGGAGACCTGGAACTGGCATTACAGATGGTTGTGAGACACCATGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGGAGACCTGGAACTGGCATTACAGATGGTTGTGAGACACCATGTA  800

seq1  GGTGCTGGGAACCGAACCTGGGTCCTCTGCAAGAGCACTAAGCACTCTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTGGGAACCGAACCTGGGTCCTCTGCAAGAGCACTAAGCACTCTTA  850

seq1  ATCATTTCTCCAGCCTTTTATTTTATTAATGAATTTATTTATTTTTTGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTCTCCAGCCTTTTATTTTATTAATGAATTTATTTATTTTTTGAA  900

seq1  GCAGGCTTTCTCTGGCTGTCCTGGATCTCTGTGGATCAGGTTGGCTTCTA  950
      ||| |||||||||||||||||||||||||||||||||| |||||||||||
seq2  GCA-GCTTTCTCTGGCTGTCCTGGATCTCTGTGGATCA-GTTGGCTTCTA  948

seq1  AGTCACAGAGATCCATTTGCCTCTGCCTCCTGAATGCTGGAACTAAAGGC  1000
      ||||||||||||||| |||||||||||||||||||||||| |||||||||
seq2  AGTCACAGAGATCCA-TTGCCTCTGCCTCCTGAATGCTGG-ACTAAAGGC  996

seq1  GTAAAGGCGTGTGGGAAGCCACATGTGCCGTTGCAGAGTGGCACTGACTA  1050
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GT-AAGGCGTGTGGGAAGCCACATGTGCCGTTGCAGAGTGGCACTGACTA  1045

seq1  CTGCTGGCCACCACGCATAAGTTTGGACAAACCACCAATGTGTA-CATAT  1099
      ||||| |||||||||||| ||||| ||| |||||| |||||||| |||||
seq2  CTGCT-GCCACCACGCAT-AGTTT-GAC-AACCACAAATGTGTACCATAT  1091

seq1  GCAGTAAAGTTTT  1112
      ||||||| |||||
seq2  GCAGTAAGGTTTT  1104