BAC Information

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BAC

Clone NameB6Ng01-087N20
Chromosome11 (Build37)
Map Location 23,347,873 - 23,511,813
singlet/doubletdoublet
Overlap geneAhsa2, 1700093K21Rik, A730027B03Rik, 0610010F05Rik
Upstream geneTmem17, LOC100042827, LOC100042846, LOC666078, B3gnt2, 9130230N09Rik, Commd1, Zrsr1, Cct4, 4930430E16Rik, LOC100042875, Xpo1, LOC100042202
Downstream genePex13, 4933435A13Rik, Rel, Papolg, A830031A19Rik, LOC100042256, Bcl11a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087N20.bB6Ng01-087N20.g
ACCDH900872DH900873
length1,1681,077
definitionDH900872|Mus musculus domesticus DNA, BAC clone: B6Ng01-087N20, 5' end.DH900873|Mus musculus domesticus DNA, BAC clone: B6Ng01-087N20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,510,638 - 23,511,813)(23,347,873 - 23,348,948)
sequence
gaattccttgcatccctggaaaaatcaatgtggaccgacatggaaatatt
atctacatccacataaggtgcggtaaagattaaatacagtttttgtgtat
gaatttaaaaagtatttatagaaacataacttaattttctggcttataga
gacaaagtcttgtttgctatataatctgaactaactttgaacttaatgtc
ttcctacctccaagtgtcagaattaaatgcaggcaccaccacacacatac
tgtataactacttctataagcaataggacagcatctgagcttaattctaa
ctttgacttagaaaaatgtgctttcaaaacaaagttattgtaaaagcaac
attgtatttactaggtgagtttcataatgtcctaaaacttcaaagtgtta
caaattactatatattagtcttaaaatattctggccagtaccattgaagt
gatttatcactaacattttcttatccagaggactggggttcaatcctgag
cacacatgcggcagctaacaactttctgcaactcatggtctagggaatac
gacacgtcacacagaggtgcaggctgaacaccaatggacatacaaatgaa
aataaatcatttttaaaagataaactttaaaaaaagattaaaaaacaaat
acaagacaacccttaatttgatgttagaattaataccatagttaacttta
aaatatttcatatttctctcaataagtaattgctgaattttcactactta
taggcacatggaaccattcatatatatatgaattttgacagcaataacta
ttattagtagtatgtggaaaaagtaaattgacattaacttcaacatctat
ttttggtgttctactaattcttctacaagacaacagttgatacaaacatt
ttataaactgtcttttagtcagttaagagcactaactgctcttccagagg
acccaggttcaattcctagcacccacatggcaccttacaaccctctgtta
cttcagtctagaacatctgatgcctcttctactctttggcactacacaat
ctggtacatagaacatacatgcagacaaaatacttatgcataaaataaag
taaggaaacaatatgtttttaaattaacaattgttcttaagcgagcatag
tgtggtttctcaatgcct
gaattcaatccctagagatcatttaatgatgggagaagtcagttgtcttt
tgagcctatctgtcccacatgtctgaacatatattccatacacacatata
tacagaatggtaacacacataccaaattttattttttgaatggggagggg
atagccctggctatcctggaacgcactctgtagaccaggctggcctcgaa
ctcagaaattggcctgcctctgcctcccaagtgctgggattaaaggcgtg
cgccaccactgcccagtcttacacgtgagactttttaaaaggctcatatg
tatcctggtagatcgatttatgcccacttttatttcctccttgttataag
aaaactgtccctatagataatttactaatgggtaatgacaactgaagtac
tatcttaaaataatcattgattaaaaacaaaaaggtataattcttcctag
taatgcaagattttggattttttttaagacagggaacatggtggcacagt
ggctaaaagatgaaattagagtttttgctctcttatatcctgtaatttta
gcttgtggcattgtaaaaagaaaatccgttcagtagaagttgcataaaat
ttttaagtaacatgggaaaaagccaaagtgaaatgttgctttgcttgcta
cacagcttccacaaagagaaatattcagttcctaagctctggctctggct
ttcagagcatactaagaaataccatgtggtttggtttggtttggtttttg
gtgttttgagacagggtttctctgtgtcgtcctggctctcttttgactta
ttagcatagatcagcatggccctgagcgcagcgacctgccggcctctgct
gctgcctctcaggtgcagggattaaggatggctgcttcatagttttaata
ataaatattcaggatatatgtttaccgatgagaactttaaaaaattgtaa
ccacagtttaagttttctacaattaaaattaagcagtggtgttagtgttc
tctgtttgcacaaggctgttttcagtggtttgaatggtctgtttgacaaa
gtctactttttgcattaaagttctcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_23510638_23511813
seq2: B6Ng01-087N20.b_49_1216 (reverse)

seq1  AGGCACTGAGA---CACACTATGCCTCGCTTTAAAGACAATTTGTTTATT  47
      ||||| |||||   ||||||||| |||||||  ||||  | ||||| |||
seq2  AGGCATTGAGAAACCACACTATG-CTCGCTT--AAGAACAATTGTTAATT  47

seq1  T-AAAACATATTGTTTCCTTTACTTTTTATTTTATGCATAAGTATTTTGT  96
      | |||||||||||||||| ||||  |||||||||||||||||||||||||
seq2  TAAAAACATATTGTTTCC-TTAC--TTTATTTTATGCATAAGTATTTTGT  94

seq1  CTGCATGTATG-TCTATGTACCAGATTTGTGTAGTGCCCAAAGAGGTTAG  145
      ||||||||||| ||||||||||||| |||||||||| ||||||||  |||
seq2  CTGCATGTATGTTCTATGTACCAGA-TTGTGTAGTG-CCAAAGAG--TAG  140

seq1  AAGAGGGCATCAGATGTTCTAGAACTGGAGTTAACAGAGGGTTGTAAGGT  195
      |||| ||||||||||||||||| |||| || |||||||||||||||||||
seq2  AAGA-GGCATCAGATGTTCTAG-ACTGAAG-TAACAGAGGGTTGTAAGGT  187

seq1  GCCATGTGGGTGCTAGGAATTGAACCTGGGTCCTCTGGAAGAGCAGTTAG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGTGGGTGCTAGGAATTGAACCTGGGTCCTCTGGAAGAGCAGTTAG  237

seq1  TGCTCTTAACTGACTAAAAGACAGTTTATAAAATGTTTGTATCAACTGTT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTAACTGACTAAAAGACAGTTTATAAAATGTTTGTATCAACTGTT  287

seq1  GTCTTGTAGAAGAATTAGTAGAACACCAAAAATAGATGTTGAAGTTAATG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGTAGAAGAATTAGTAGAACACCAAAAATAGATGTTGAAGTTAATG  337

seq1  TCAATTTACTTTTTCCACATACTACTAATAATAGTTATTGCTGTCAAAAT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTACTTTTTCCACATACTACTAATAATAGTTATTGCTGTCAAAAT  387

seq1  TCATATATATATGAATGGTTCCATGTGCCTATAAGTAGTGAAAATTCAGC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATATATATGAATGGTTCCATGTGCCTATAAGTAGTGAAAATTCAGC  437

seq1  AATTACTTATTGAGAGAAATATGAAATATTTTAAAGTTAACTATGGTATT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTTATTGAGAGAAATATGAAATATTTTAAAGTTAACTATGGTATT  487

seq1  AATTCTAACATCAAATTAAGGGTTGTCTTGTATTTGTTTTTTAATCTTTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTAACATCAAATTAAGGGTTGTCTTGTATTTGTTTTTTAATCTTTT  537

seq1  TTTAAAGTTTATCTTTTAAAAATGATTTATTTTCATTTGTATGTCCATTG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGTTTATCTTTTAAAAATGATTTATTTTCATTTGTATGTCCATTG  587

seq1  GTGTTCAGCCTGCACCTCTGTGTGACGTGTCGTATTCCCTAGACCATGAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCAGCCTGCACCTCTGTGTGACGTGTCGTATTCCCTAGACCATGAG  637

seq1  TTGCAGAAAGTTGTTAGCTGCCGCATGTGTGCTCAGGATTGAACCCCAGT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGAAAGTTGTTAGCTGCCGCATGTGTGCTCAGGATTGAACCCCAGT  687

seq1  CCTCTGGATAAGAAAATGTTAGTGATAAATCACTTCAATGGTACTGGCCA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGGATAAGAAAATGTTAGTGATAAATCACTTCAATGGTACTGGCCA  737

seq1  GAATATTTTAAGACTAATATATAGTAATTTGTAACACTTTGAAGTTTTAG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTTTAAGACTAATATATAGTAATTTGTAACACTTTGAAGTTTTAG  787

seq1  GACATTATGAAACTCACCTAGTAAATACAATGTTGCTTTTACAATAACTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTATGAAACTCACCTAGTAAATACAATGTTGCTTTTACAATAACTT  837

seq1  TGTTTTGAAAGCACATTTTTCTAAGTCAAAGTTAGAATTAAGCTCAGATG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGAAAGCACATTTTTCTAAGTCAAAGTTAGAATTAAGCTCAGATG  887

seq1  CTGTCCTATTGCTTATAGAAGTAGTTATACAGTATGTGTGTGGTGGTGCC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTATTGCTTATAGAAGTAGTTATACAGTATGTGTGTGGTGGTGCC  937

seq1  TGCATTTAATTCTGACACTTGGAGGTAGGAAGACATTAAGTTCAAAGTTA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTAATTCTGACACTTGGAGGTAGGAAGACATTAAGTTCAAAGTTA  987

seq1  GTTCAGATTATATAGCAAACAAGACTTTGTCTCTATAAGCCAGAAAATTA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGATTATATAGCAAACAAGACTTTGTCTCTATAAGCCAGAAAATTA  1037

seq1  AGTTATGTTTCTATAAATACTTTTTAAATTCATACACAAAAACTGTATTT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATGTTTCTATAAATACTTTTTAAATTCATACACAAAAACTGTATTT  1087

seq1  AATCTTTACCGCACCTTATGTGGATGTAGATAATATTTCCATGTCGGTCC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTACCGCACCTTATGTGGATGTAGATAATATTTCCATGTCGGTCC  1137

seq1  ACATTGATTTTTCCAGGGATGCAAGGAATTC  1176
      |||||||||||||||||||||||||||||||
seq2  ACATTGATTTTTCCAGGGATGCAAGGAATTC  1168

seq1: chr11_23347873_23348948
seq2: B6Ng01-087N20.g_70_1146

seq1  GAATTCAATCCCTAGAGATCATTTAATGATGGGAGAAGTCAGTTGTCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCCCTAGAGATCATTTAATGATGGGAGAAGTCAGTTGTCTTT  50

seq1  TGAGCCTATCTGTCCCACATGTCTGAACATATATTCCATACACACATATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCTATCTGTCCCACATGTCTGAACATATATTCCATACACACATATA  100

seq1  TACAGAATGGTAACACACATACCAAATTTTATTTTTTGAATGGGGAGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAATGGTAACACACATACCAAATTTTATTTTTTGAATGGGGAGGGG  150

seq1  ATAGCCCTGGCTATCCTGGAACGCACTCTGTAGACCAGGCTGGCCTCGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCCTGGCTATCCTGGAACGCACTCTGTAGACCAGGCTGGCCTCGAA  200

seq1  CTCAGAAATTGGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAAATTGGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTG  250

seq1  CGCCACCACTGCCCAGTCTTACACGTGAGACTTTTTAAAAGGCTCATATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCACCACTGCCCAGTCTTACACGTGAGACTTTTTAAAAGGCTCATATG  300

seq1  TATCCTGGTAGATCGATTTATGCCCACTTTTATTTCCTCCTTGTTATAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTGGTAGATCGATTTATGCCCACTTTTATTTCCTCCTTGTTATAAG  350

seq1  AAAACTGTCCCTATAGATAATTTACTAATGGGTAATGACAACTGAAGTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGTCCCTATAGATAATTTACTAATGGGTAATGACAACTGAAGTAC  400

seq1  TATCTTAAAATAATCATTGATTAAAAACAAAAAGGTATAATTCTTCCTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTAAAATAATCATTGATTAAAAACAAAAAGGTATAATTCTTCCTAG  450

seq1  TAATGCAAGATTTTGGATTTTTTTTAAGACAGGGAACATGGTGGCACAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCAAGATTTTGGATTTTTTTTAAGACAGGGAACATGGTGGCACAGT  500

seq1  GGCTAAAAGATGAAATTAGAGTTTTTGCTCTCTTATATCCTGTAATTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAAAGATGAAATTAGAGTTTTTGCTCTCTTATATCCTGTAATTTTA  550

seq1  GCTTGTGGCATTGTAAAAAGAAAATCCGTTCAGTAGAAGTTGCATAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTGGCATTGTAAAAAGAAAATCCGTTCAGTAGAAGTTGCATAAAAT  600

seq1  TTTTAAGTAACATGGGAAAAAGCCAAAGTGAAATGTTGCTTTGCTTGCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGTAACATGGGAAAAAGCCAAAGTGAAATGTTGCTTTGCTTGCTA  650

seq1  CACAGCTTCCACAAAGAGAAATATTCAGTTCCTAAGCTCTGGCTCTGGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTTCCACAAAGAGAAATATTCAGTTCCTAAGCTCTGGCTCTGGCT  700

seq1  TTCAGAGCATACTAAGAAATACCATGTGGTTTGGTTTGGTTTGG-TTTTG  749
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTCAGAGCATACTAAGAAATACCATGTGGTTTGGTTTGGTTTGGTTTTTG  750

seq1  GTGTTTTGAGACAGGGTTTCTCTGTGTCGTCCTGGCTCTC-TTTGACTTA  798
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTGTTTTGAGACAGGGTTTCTCTGTGTCGTCCTGGCTCTCTTTTGACTTA  800

seq1  TTAGCATAGATCAGCATGGCCCTGAGCGCAGCGACCTGCCGGCCTCTGCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCATAGATCAGCATGGCCCTGAGCGCAGCGACCTGCCGGCCTCTGCT  850

seq1  GCTGCCTCTCAGGTGCAGGGATTAAGGATGGCTGCTTCATAGTTTTAATA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCTCTCAGGTGCAGGGATTAAGGATGGCTGCTTCATAGTTTTAATA  900

seq1  ATAAATATTCAGGATATATGTTTTACCGATGAGAACTTTAAAAAATTGTA  948
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATAAATATTCAGGATATATG-TTTACCGATGAGAACTTTAAAAAATTGTA  949

seq1  ACCACAG-TTAAG-TTTCTACAAATAAAATTAAGCAGTGTGGTTAGTGTT  996
      ||||||| ||||| ||||||||| |||||||||||||||  |||||||||
seq2  ACCACAGTTTAAGTTTTCTACAATTAAAATTAAGCAGTGGTGTTAGTGTT  999

seq1  CTCTGTTGCCAACAAGCTGTTTTCAGTTGGTTTGAAT-GTCTGTTTGGAC  1045
      |||||||  ||  | ||||||||||| |||||||||| |||||||| |||
seq2  CTCTGTTTGCACAAGGCTGTTTTCAG-TGGTTTGAATGGTCTGTTT-GAC  1047

seq1  AAGGTCTACTTTTTGCATTTAAGTTTCTCTA  1076
      || |||||||||||||||| ||| |||||||
seq2  AAAGTCTACTTTTTGCATTAAAG-TTCTCTA  1077