BAC Information

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BAC

Clone NameB6Ng01-089H08
Chromosome11 (Build37)
Map Location 64,970,331 - 65,107,555
singlet/doubletdoublet
Overlap geneAU040829, 1700086D15Rik, LOC100041790, Myocd
Upstream geneEG544785, Hs3st3a1, LOC626959, Elac2
Downstream geneMap2k4, Zkscan6, Dnahc9, Gm879
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089H08.bB6Ng01-089H08.g
ACCDH902030DH902031
length1,1271,104
definitionDH902030|Mus musculus domesticus DNA, BAC clone: B6Ng01-089H08, 5' end.DH902031|Mus musculus domesticus DNA, BAC clone: B6Ng01-089H08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,106,414 - 65,107,555)(64,970,331 - 64,971,438)
sequence
gaattcccaccccagaagctcagctcctgtagatccttctcttctgcaaa
ctaagcaggagcccagagacaatggtgagacacatggacagagcaaacag
agctgagccttgctgtcgaacagaccctgcaactttgaagaggttattac
acatctgttgccgtttttgaaactgcaaagttcattaacttgagaactcg
gggtgcttctcacagaaggatctggcacacatgagagcttctgatagtac
caacagatgacctcatgaaatgtaatgggtctagcctgctccaccctctt
caggccaatctcattctcttaaggatctcattggttaaatgtatctgttt
ggttccctgagtggctcttcatgtaagctgcttgtttgcaaagataagtc
taattctaactcacccagatttagaagttttagcccataatcaactagac
cctgcttgactactgctttggacctttggtgaggccactggtcacagcag
ggtaactattcaccacttgaccaggatgtgaaagggcagaaaaggaagtt
gtctgggtcccatatttccctttgaaggcattcttccctgtgatctaagg
agtcctcgataagactctaccttctcaaaagttcccccatctcctaaagt
caccgccctatcattcttgaacatttagacctttgggagacactaaagag
tctgactatagtggtctctaaaatgtatgttccaaacatgtgcagtgggt
gggattaatatagtaaatcagtacaggctgatgaacagggtccaccctcc
ttgatcctatgactcagacatagtcttctttcccataatcacagtggaat
acagaagccatgacactactgggctggaatgtagggaagagagaaacagg
aagtgacactttcctagagcacagccttgggtataaggtagaccaaagat
gcccatatacaaagaggagagcccttctgtttgtagagccagaccaggga
gagccatgtttttagttaaccgagacctagacttcctgtagcatgattta
aactttcagatcttggtgaaatttgaaatagtcagtcaggttagtatcat
attttatagcaaggagactggggctca
gaattctgtgggaaaataaacgtttattctaaaaattatctctaaagtta
gaaaatgagagttacatttgcttcctggacagaaaggagagtttcgattt
gctagacatcacagcctccccaactcggcaagggtcaggggtccctgaat
ggaggagtgacagatcctctctgtgtccccagaacctgctctctgagctc
agagagctctcagcactgagccagaccataacctccctatttcccatcac
cacagaaatagcattggaaataatctgctcttgactactaataaaaggga
tgcttacagatccctctaaaacaaataaccacaaattactgttttagtca
catggctactaatttacttttttaaacagccacaagaaaacaatgcttct
tatcaccattattaaaaaattaccaatcagtgttgatgaattcctctggt
ggaaaaaagtgggaggggaggtgattaattgctgctcaagggaaaaaaaa
aaaggctccctcacaatgacttgcagaaggtctgggctgagagaattctc
caagaaagtgaggctgcctcttgctgactgcagagaacaggcaggccatc
tgaggggagacgggacaggcctgtagagtaaggggcatggagaaccaagg
gcaaagggcctttctctgtccctctgccagtctgtcatgagtggctcagt
gtggtctgctagcacaaaagccacacctcagcaagagggcctgcctgggc
tcccaggactctctctactgaagaacttaaggggagtctctggtctggag
aagcctgcttgcctctcatagaaagaggctgcagaagcctgcattgatct
gagaagtccaatcacagccagcttttgcaaaagcaggtgatgactaatct
agacttgtttctgactttcccctctggtcctattgatgcctgaagggttt
cagaagacctactggaaggacagccgtcgcttcaagcaaggttctcagtg
gcttcgccagagcaaaaatgcagctatgctaaagttcttaagcagccagg
gctataaaagagaagtcctgttctcaatactaaaaaaaaaataaaaaaaa
gttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_65106414_65107555
seq2: B6Ng01-089H08.b_43_1169 (reverse)

seq1  TGAGCCCCAGTCTCCTTGCCTATAAAATATGATTACTAAACCCTGACTGA  50
      |||||||||||||||||| ||||||||||||| ||||||  |||||||||
seq2  TGAGCCCCAGTCTCCTTG-CTATAAAATATGA-TACTAA--CCTGACTGA  46

seq1  CTATTTTCAAATTTCACCCAAGATCCTGAAAAGTTTAAAATCATGCTAAC  100
      ||| |||||||||||| ||||||| ||| ||||||| |||||||||| ||
seq2  CTA-TTTCAAATTTCA-CCAAGAT-CTG-AAAGTTT-AAATCATGCT-AC  90

seq1  AGGAAGTCCTAGGTCTCTGTTAACATAAAAACATGGCTTCTCCCTGGTCT  150
      ||||||| ||||||||| |||||| |||||||||||| ||||||||||||
seq2  AGGAAGT-CTAGGTCTCGGTTAAC-TAAAAACATGGC-TCTCCCTGGTCT  137

seq1  GGCTCTTACAAACAGGAGGGCTCTCCTCTTTGTATATGGGCATCTTTGGT  200
      ||||| ||||||||| ||||||||||||||||||||||||||||||||||
seq2  GGCTC-TACAAACAGAAGGGCTCTCCTCTTTGTATATGGGCATCTTTGGT  186

seq1  CTACCTTATACCCAAGGCTGTGCTCTAGGAAAGTGTCACTTCCTGTTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTTATACCCAAGGCTGTGCTCTAGGAAAGTGTCACTTCCTGTTTCT  236

seq1  CTCCTTCCCTACATTCCAGCCCAGTAGTGTCATGGCTTCTGTATTCCACT  300
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CT-CTTCCCTACATTCCAGCCCAGTAGTGTCATGGCTTCTGTATTCCACT  285

seq1  GTGATTATGGGAAAGAAGACTATGTCTGAGTCATAGGATCAAGGAGGGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTATGGGAAAGAAGACTATGTCTGAGTCATAGGATCAAGGAGGGTG  335

seq1  GACCCTGTTCATCAGCCTGTACTGATTTACTATATTAATCCCACCCACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTGTTCATCAGCCTGTACTGATTTACTATATTAATCCCACCCACTG  385

seq1  CACATGTTTGGAACATACATTTTAGAGACCACTATAGTCAGACTCTTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTTTGGAACATACATTTTAGAGACCACTATAGTCAGACTCTTTAG  435

seq1  TGTCTCCCAAAGGTCTAAATGTTCAAGAATGATAGGGCGGTGACTTTAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCCAAAGGTCTAAATGTTCAAGAATGATAGGGCGGTGACTTTAGG  485

seq1  AGATGGGGGAACTTTTGAGAAGGTAGAGTCTTATCGAGGACTCCTTAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGGGGAACTTTTGAGAAGGTAGAGTCTTATCGAGGACTCCTTAGAT  535

seq1  CACAGGGAAGAATGCCTTCAAAGGGAAATATGGGACCCAGACAACTTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGGAAGAATGCCTTCAAAGGGAAATATGGGACCCAGACAACTTCCT  585

seq1  TTTCTGCCCTTTCACATCCTGGTCAAGTGGTGAATAGTTACCCTGCTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCCCTTTCACATCCTGGTCAAGTGGTGAATAGTTACCCTGCTGTG  635

seq1  ACCAGTGGCCTCACCAAAGGTCCAAAGCAGTAGTCAAGCAGGGTCTAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTGGCCTCACCAAAGGTCCAAAGCAGTAGTCAAGCAGGGTCTAGTT  685

seq1  GATTATGGGCTAAAACTTCTAAATCTGGGTGAGTTAGAATTAGACTTATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATGGGCTAAAACTTCTAAATCTGGGTGAGTTAGAATTAGACTTATC  735

seq1  TTTGCAAACAAGCAGCTTACATGAAGAGCCACTCAGGGAACCAAACAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAAACAAGCAGCTTACATGAAGAGCCACTCAGGGAACCAAACAGAT  785

seq1  ACATTTAACCAATGAGATCCTTAAGAGAATGAGATTGGCCTGAAGAGGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTAACCAATGAGATCCTTAAGAGAATGAGATTGGCCTGAAGAGGGT  835

seq1  GGAGCAGGCTAGACCCATTACATTTCATGAGGTCATCTGTTGGTACTATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAGGCTAGACCCATTACATTTCATGAGGTCATCTGTTGGTACTATC  885

seq1  AGAAGCTCTCATGTGTGCCAGATCCTTCTGTGAGAAGCACCCCGAGTTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTCTCATGTGTGCCAGATCCTTCTGTGAGAAGCACCCCGAGTTCT  935

seq1  CAAGTTAATGAACTTTGCAGTTTCAAAAACGGCAACAGATGTGTAATAAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTAATGAACTTTGCAGTTTCAAAAACGGCAACAGATGTGTAATAAC  985

seq1  CTCTTCAAAGTTGCAGGGTCTGTTCGACAGCAAGGCTCAGCTCTGTTTGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCAAAGTTGCAGGGTCTGTTCGACAGCAAGGCTCAGCTCTGTTTGC  1035

seq1  TCTGTCCATGTGTCTCACCATTGTCTCTGGGCTCCTGCTTAGTTTGCAGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCCATGTGTCTCACCATTGTCTCTGGGCTCCTGCTTAGTTTGCAGA  1085

seq1  AGAGAAGGATCTACAGGAGCTGAGCTTCTGGGGTGGGAATTC  1142
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGGATCTACAGGAGCTGAGCTTCTGGGGTGGGAATTC  1127

seq1: chr11_64970331_64971438
seq2: B6Ng01-089H08.g_68_1171

seq1  GAATTCTGTGGGAAAATAAACGTTTATTCTAAAAATTATCTCTAAAGTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGGGAAAATAAACGTTTATTCTAAAAATTATCTCTAAAGTTA  50

seq1  GAAAATGAGAGTTACATTTGCTTCCTGGACAGAAAGGAGAGTTTCGATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGAGAGTTACATTTGCTTCCTGGACAGAAAGGAGAGTTTCGATTT  100

seq1  GCTAGACATCACAGCCTCCCCAACTCGGCAAGGGTCAGGGGTCCCTGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGACATCACAGCCTCCCCAACTCGGCAAGGGTCAGGGGTCCCTGAAT  150

seq1  GGAGGAGTGACAGATCCTCTCTGTGTCCCCAGAACCTGCTCTCTGAGCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGTGACAGATCCTCTCTGTGTCCCCAGAACCTGCTCTCTGAGCTC  200

seq1  AGAGAGCTCTCAGCACTGAGCCAGACCATAACCTCCCTATTTCCCATCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGCTCTCAGCACTGAGCCAGACCATAACCTCCCTATTTCCCATCAC  250

seq1  CACAGAAATAGCATTGGAAATAATCTGCTCTTGACTACTAATAAAAGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAATAGCATTGGAAATAATCTGCTCTTGACTACTAATAAAAGGGA  300

seq1  TGCTTACAGATCCCTCTAAAACAAATAACCACAAATTACTGTTTTAGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTACAGATCCCTCTAAAACAAATAACCACAAATTACTGTTTTAGTCA  350

seq1  CATGGCTACTAATTTACTTTTTTAAACAGCCACAAGAAAACAATGCTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCTACTAATTTACTTTTTTAAACAGCCACAAGAAAACAATGCTTCT  400

seq1  TATCACCATTATTAAAAAATTACCAATCAGTGTTGATGAATTCCTCTGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACCATTATTAAAAAATTACCAATCAGTGTTGATGAATTCCTCTGGT  450

seq1  GGAAAAAAGTGGGAGGGGAGGTGATTAATTGCTGCTCAAGGGAAAAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAAGTGGGAGGGGAGGTGATTAATTGCTGCTCAAGGGAAAAAAAA  500

seq1  AAAGGCTCCCTCACAATGACTTGCAGAAGGTCTGGGCTGAGAGAATTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCTCCCTCACAATGACTTGCAGAAGGTCTGGGCTGAGAGAATTCTC  550

seq1  CAAGAAAGTGAGGCTGCCTCTTGCTGACTGCAGAGAACAGGCAGGCCATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAGTGAGGCTGCCTCTTGCTGACTGCAGAGAACAGGCAGGCCATC  600

seq1  TGAGGGGAGACGGGACAGGCCTGTAGAGTAAGGGGCATGGAGAACCAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGGAGACGGGACAGGCCTGTAGAGTAAGGGGCATGGAGAACCAAGG  650

seq1  GCAAAGGGCC-TTCTCTGTCCCTCTGCCAGTCTGTCATGAGTGGCTCAGT  699
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGGGCCTTTCTCTGTCCCTCTGCCAGTCTGTCATGAGTGGCTCAGT  700

seq1  GTGGTCTGCTAGCACAAAAGCCACACCTCAGCAAGAGGGCCTGCCTGGGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCTGCTAGCACAAAAGCCACACCTCAGCAAGAGGGCCTGCCTGGGC  750

seq1  TCCCAGGACTCTCTCTACTGAAGAACTTAAGGGGAGTCTCTGGTCTGGAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGACTCTCTCTACTGAAGAACTTAAGGGGAGTCTCTGGTCTGGAG  800

seq1  AAGCCTGC-TGCCTCTCATAGAAAGAGGCTGCAGAAGCCTGCATTGATCT  848
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTGCTTGCCTCTCATAGAAAGAGGCTGCAGAAGCCTGCATTGATCT  850

seq1  GAGAAGTCCAAATCACAGCCAGCTTTTGCAAAAGCAGGTGATGACTAATC  898
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGTCC-AATCACAGCCAGCTTTTGCAAAAGCAGGTGATGACTAATC  899

seq1  TAGACTTG-TTCTGACTTTTCCCCTCTGGTCCTATTGATTGCCTGATGGC  947
      |||||||| ||||||| ||||||||||||||||||||| ||||||| || 
seq2  TAGACTTGTTTCTGAC-TTTCCCCTCTGGTCCTATTGA-TGCCTGAAGGG  947

seq1  TTTCAG-AGACCTACT-GAAGGACAAGCCGTCGCTTCAGGCAAAGGGTCC  995
      |||||| ||||||||| ||||||| ||||||||||||| ||||  ||| |
seq2  TTTCAGAAGACCTACTGGAAGGAC-AGCCGTCGCTTCAAGCAA--GGTTC  994

seq1  TCAGTGGCTTCGGCCAGAGCAGAAATGCCAGCTATGCCAAAAGTTCCTAG  1045
      ||||||||||| ||||||||| ||||| |||||||| | ||||||| || 
seq2  TCAGTGGCTTC-GCCAGAGCAAAAATG-CAGCTATG-CTAAAGTTCTTA-  1040

seq1  AGCAGCCAGGGCTAT-AAAGAGAAGTCCTG-TCTCAAATAACCAAAAAAA  1093
      ||||||||||||||| |||||||||||||| |||| ||||   |||||||
seq2  AGCAGCCAGGGCTATAAAAGAGAAGTCCTGTTCTC-AATACTAAAAAAAA  1089

seq1  AAAAAAAAAAAGTTC  1108
      || ||||||||||||
seq2  AATAAAAAAAAGTTC  1104