BAC Information

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BAC

Clone NameB6Ng01-089M22
Chromosome11 (Build37)
Map Location 111,387,482 - 111,490,553
singlet/doubletdoublet
Overlap geneLOC100041559
Upstream geneLOC100041523, Kcnj16, Kcnj2, LOC667003, LOC100041539
Downstream geneEG629966, LOC629967, LOC100041589, LOC100043020, EG668396, EG667038
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089M22.bB6Ng01-089M22.g
ACCDH902288DH902289
length9571,146
definitionDH902288|Mus musculus domesticus DNA, BAC clone: B6Ng01-089M22, 5' end.DH902289|Mus musculus domesticus DNA, BAC clone: B6Ng01-089M22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,489,613 - 111,490,553)(111,387,482 - 111,388,618)
sequence
gaattcactggctggccatcttagttgaagtatcaaattcttggttgaat
gaaagacacttgctcaaaaatagacacacagaaaaatggacaagatgggt
agtgactgagtttgacttgtggcctgaattctctctcacaaacatgtgaa
cactcatcccccccaaaatacacatgcgtgcgcgcgcgcacacacacaca
cacacacacacacacacacacacacacacacacacacacagaggggaggg
agaacaacagacagagacacagagacaaagacaagcaagaaagagaaagt
atagatgtaaatttcccaaatgtaattcagtgcaatttatatttttctcc
taggagtcactgtgtctcaaataatagttattttagtgttaaattttgtg
aacatgcatttgcatttcattatttatattcaattcagagaattacttaa
gcactctgacatgtctacaacacacaatattttatcattaaatcacttta
cttaatacaaatttcagactgtttttacatagaaacatctttgaatgttt
tttattatactacctagtcttaaatattctaatgttttcaatgacaattg
gagtaggtagagggaatcttatgtgctattttaatgctagaaataattga
tacccttccttccccattaagccagaaatctaaaattgtttgttttcttc
tattgttacagtgtatcattttaagcaaaacattactttctagcttcatg
tgtagtttctcaataaccataaattcaaatttttcttaaatgttcaaaat
gtgggtttaagcttgttaaattcaatatttctgttggctatgcatacatg
aataaatgtggatggtatgtggaatgttattgggactaaaacaacccaaa
agtaaataaaccaagtaaatattactttttactagaatagtcccattttg
tgcactc
gaattcttaactgatgtacaaagctttagagataattgctgactcagctt
ttcctgctgcctatttgaggattaacccagatcagtgatacaggaaccag
tggagctatatttctggcaagaatctataacatagtctttccatgactca
gcataacatcttggctggtcctgtgtttctgcccacttataagtattagg
cttcctccaaaaacatctagattttcactctagttttgacgttaaaagtg
ggatttccaggcttggatagaattcacttatttagatgaattttatctta
aatggtgtcccctcctccatctgttttgtttgaatcaaccacagcatttc
aggaagtgggatgggactttccatttcccgatttacctcttcctctgcgt
gctatctgcaaggtaagtgcctattactttagcggtagcaagtagaacat
cacaagggtgactaaaagcagatgcagctgataatctgcaagtgctctgt
gctggcatagagtcctctgtatctcaagcaggactgctttagacctggcc
tctcagacagtagaagttgcacgatttgctgggactcgagacctgataac
aggaatgaaggacaagaagagagatttggaaggcaagagaaatgaccaaa
ataaacacctcccttcaagttgctctatatcaagatatctgactgatctt
acctctgggacctgcagaaaagacttatgtcctgggctttacaataatag
agaaaggggaaacctgtaatttcttgccacccctatccttacaaggttca
ctttatggggcattagccttcttggatctcctgaatgagtggggatacat
accaagtgtgtttctactgaaatattccagcaaagctcagggcgactaag
acgcatgggcctgctctgggaggaggtagcaccagtacacactgtggtca
tcatgtttgccctgcacatcttctgaagctatgtctaaatctgaatgacg
aggcccaattacagaatctgaagaagaaacatccgatgatgctccttatg
gggttgttctcctcactccttcgaatgaaggccaatgtgggcttcttaaa
gccaaagctcgcgtgtggatgcttgacgaacttctttttctttcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_111489613_111490553
seq2: B6Ng01-089M22.b_45_1001 (reverse)

seq1  GAGTGCAACAAAT-GGACTA-TCTAGTAAAAAGTAATATTTACTTGG-TT  47
      |||||||  |||| |||||| |||||||||||||||||||||||||| ||
seq2  GAGTGCACAAAATGGGACTATTCTAGTAAAAAGTAATATTTACTTGGTTT  50

seq1  ATTTACTTTTGTGTTGTTTT-GT-CCAATAACATT-CACATACCATCAAC  94
      ||||||||||| |||||||| || ||||||||||| ||||||||||| ||
seq2  ATTTACTTTTGGGTTGTTTTAGTCCCAATAACATTCCACATACCATCCAC  100

seq1  A-TTAATCATGTATGCATAGCC-ACAGAAATATTGAATTTAAC-AGCTTA  141
      | ||| |||||||||||||||| |||||||||||||||||||| ||||||
seq2  ATTTATTCATGTATGCATAGCCAACAGAAATATTGAATTTAACAAGCTTA  150

seq1  AA-CCACATTTTGAACA-TTAAGAAAAATTTGAA-TTATGGTTATTGAGA  188
      || |||||||||||||| |||||||||||||||| |||||||||||||||
seq2  AACCCACATTTTGAACATTTAAGAAAAATTTGAATTTATGGTTATTGAGA  200

seq1  AACTACACATG-AGCTAGAAAGTAATGTTTTGCTT-AAATGATACACTGT  236
      ||||||||||| ||||||||||||||||||||||| ||||||||||||||
seq2  AACTACACATGAAGCTAGAAAGTAATGTTTTGCTTAAAATGATACACTGT  250

seq1  AACAATAGAAG-AAACAAACAATTTTAGATTTCTGGCTTAATGGGGAAGG  285
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AACAATAGAAGAAAACAAACAATTTTAGATTTCTGGCTTAATGGGGAAGG  300

seq1  AAGGGTATCAATTATTTCTAGCATT-AAATAGCACATAAGATTCCCTCTA  334
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AAGGGTATCAATTATTTCTAGCATTAAAATAGCACATAAGATTCCCTCTA  350

seq1  CCTACTCCAATTGTCATTGAAAACATTAGAATATTTAAGACTAGGTAGTA  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTCCAATTGTCATTGAAAACATTAGAATATTTAAGACTAGGTAGTA  400

seq1  TAATAAAAAACATTCAAAGATGTTTCTATGTAAAAACAGTCTGAAATTTG  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAAAAACATTCAAAGATGTTTCTATGTAAAAACAGTCTGAAATTTG  450

seq1  TATTAAGTAAAGTGATTTAATGATAAAATATTGTGTGTTGTAGACATGTC  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAGTAAAGTGATTTAATGATAAAATATTGTGTGTTGTAGACATGTC  500

seq1  AGAGTGCTTAAGTAATTCTCTGAATTGAATATAAATAATGAAATGCAAAT  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGCTTAAGTAATTCTCTGAATTGAATATAAATAATGAAATGCAAAT  550

seq1  GCATGTTCACAAAATTTAACACTAAAATAACTATTATTTGAGACACAGTG  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTTCACAAAATTTAACACTAAAATAACTATTATTTGAGACACAGTG  600

seq1  ACTCCTAGGAGAAAAATATAAATTGCACTGAATTACATTTGGGAAATTTA  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTAGGAGAAAAATATAAATTGCACTGAATTACATTTGGGAAATTTA  650

seq1  CATCTATACTTTCTCTTTCTTGCTTGTCTTTGTCTCTGTGTCTCTGTCTG  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTATACTTTCTCTTTCTTGCTTGTCTTTGTCTCTGTGTCTCTGTCTG  700

seq1  TTGTTCTCCCTCCCCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTCCCTCCCCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  750

seq1  GTGTGTGTGTGTGTGTGTGCGCGCGCGCACGCATGTGTATTTTGGGGGGG  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGCGCGCGCGCACGCATGTGTATTTTGGGGGGG  800

seq1  ATGAGTGTTCACATGTTTGTGAGAGAGAATTCAGGCCACAAGTCAAACTC  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTGTTCACATGTTTGTGAGAGAGAATTCAGGCCACAAGTCAAACTC  850

seq1  AGTCACTACCCATCTTGTCCATTTTTCTGTGTGTCTATTTTTGAGCAAGT  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACTACCCATCTTGTCCATTTTTCTGTGTGTCTATTTTTGAGCAAGT  900

seq1  GTCTTTCATTCAACCAAGAATTTGATACTTCAACTAAGATGGCCAGCCAG  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTCATTCAACCAAGAATTTGATACTTCAACTAAGATGGCCAGCCAG  950

seq1  TGAATTC  941
      |||||||
seq2  TGAATTC  957

seq1: chr11_111387482_111388618
seq2: B6Ng01-089M22.g_70_1215

seq1  GAATTCTTAACTGATGTACAAAGCTTTAGAGATAATTGCTGACTCAGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAACTGATGTACAAAGCTTTAGAGATAATTGCTGACTCAGCTT  50

seq1  TTCCTGCTGCCTATTTGAGGATTAACCCAGATCAGTGATACAGGAACCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGCTGCCTATTTGAGGATTAACCCAGATCAGTGATACAGGAACCAG  100

seq1  TGGAGCTATATTTCTGGCAAGAATCTATAACATAGTCTTTCCATGACTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCTATATTTCTGGCAAGAATCTATAACATAGTCTTTCCATGACTCA  150

seq1  GCATAACATCTTGGCTGGTCCTGTGTTTCTGCCCACTTATAAGTATTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAACATCTTGGCTGGTCCTGTGTTTCTGCCCACTTATAAGTATTAGG  200

seq1  CTTCCTCCAAAAACATCTAGATTTTCACTCTAGTTTTGACGTTAAAAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCCAAAAACATCTAGATTTTCACTCTAGTTTTGACGTTAAAAGTG  250

seq1  GGATTTCCAGGCTTGGATAGAATTCACTTATTTAGATGAATTTTATCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTCCAGGCTTGGATAGAATTCACTTATTTAGATGAATTTTATCTTA  300

seq1  AATGGTGTCCCCTCCTCCATCTGTTTTGTTTGAATCAACCACAGCATTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTGTCCCCTCCTCCATCTGTTTTGTTTGAATCAACCACAGCATTTC  350

seq1  AGGAAGTGGGATGGGACTTTCCATTTCCCGATTTACCTCTTCCTCTGCGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGTGGGATGGGACTTTCCATTTCCCGATTTACCTCTTCCTCTGCGT  400

seq1  GCTATCTGCAAGGTAAGTGCCTATTACTTTAGCGGTAGCAAGTAGAACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCTGCAAGGTAAGTGCCTATTACTTTAGCGGTAGCAAGTAGAACAT  450

seq1  CACAAGGGTGACTAAAAGCAGATGCAGCTGATAATCTGCAAGTGCTCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGGGTGACTAAAAGCAGATGCAGCTGATAATCTGCAAGTGCTCTGT  500

seq1  GCTGGCATAGAGTCCTCTGTATCTCAAGCAGGACTGCTTTAGACCTGGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCATAGAGTCCTCTGTATCTCAAGCAGGACTGCTTTAGACCTGGCC  550

seq1  TCTCAGACAGTAGAAGTTGCACGATTTGCTGGGACTCGAGACCTGATAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGACAGTAGAAGTTGCACGATTTGCTGGGACTCGAGACCTGATAAC  600

seq1  AGGAATGAAGGACAAGAAGAGAGATTTGGAAGGCAAGAGAAATGACCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGAAGGACAAGAAGAGAGATTTGGAAGGCAAGAGAAATGACCAAA  650

seq1  ATAAACACCTCCCTTCAAGTTGCTCTATATCAAGATATCTGACTGATCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACACCTCCCTTCAAGTTGCTCTATATCAAGATATCTGACTGATCTT  700

seq1  ACCTCTGGGACCTGCAGAAAAGACTTATGTCCTGGGCTTTACAATAATAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTGGGACCTGCAGAAAAGACTTATGTCCTGGGCTTTACAATAATAG  750

seq1  AGAAAGGGG-AACCTGTAATTTCTTGCCACCCCTATCCTTACAAGGTTCA  799
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGGGAAACCTGTAATTTCTTGCCACCCCTATCCTTACAAGGTTCA  800

seq1  CTTTATGGGGCATTAGCCTTCTTGGATCTCCTGAATGAGTGGGGATACAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATGGGGCATTAGCCTTCTTGGATCTCCTGAATGAGTGGGGATACAT  850

seq1  ACCAAGTGTGTTTCTACTGAAATATTCCAGCAAAGCTCAGGGCGACTAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGTGTGTTTCTACTGAAATATTCCAGCAAAGCTCAGGGCGACTAAG  900

seq1  ACGCATGGGCCTGCTCTGGGAGGGAGGTAGCACCAGTACACACTGTGGGT  949
      ||||||||||||||||||||| |||||||||||||||||||||||| |||
seq2  ACGCATGGGCCTGCTCTGGGA-GGAGGTAGCACCAGTACACACTGT-GGT  948

seq1  CATCATGTTTGCCCTGGCACATC-TCTGAAGCTATGTCTAAATCTGAATG  998
      ||||||||||||||| ||||||| ||||||||||||||||||||||||||
seq2  CATCATGTTTGCCCT-GCACATCTTCTGAAGCTATGTCTAAATCTGAATG  997

seq1  ACGA-GCCCAATTACAG-ATCTG-AGAAGAAACATCAGATGATGCTCC-T  1044
      |||| |||||||||||| ||||| |||||||||||| ||||||||||| |
seq2  ACGAGGCCCAATTACAGAATCTGAAGAAGAAACATCCGATGATGCTCCTT  1047

seq1  ATGGGGTTG-TCT-CTCACT-CTTCAGATGAAGGCCAATGTGGGC-TCTT  1090
      ||||||||| ||| |||||| ||||  |||||||||||||||||| ||||
seq2  ATGGGGTTGTTCTCCTCACTCCTTCGAATGAAGGCCAATGTGGGCTTCTT  1097

seq1  TAAGCCAAGGTCTGCGTGTGGGATGC-TGACG-ACTTC-TTTTCTTTCAC  1137
       ||||||| |   |||||| |||||| ||||| ||||| |||||||||||
seq2  AAAGCCAAAGCTCGCGTGT-GGATGCTTGACGAACTTCTTTTTCTTTCAC  1146