BAC Information

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BAC

Clone NameB6Ng01-090J23
Chromosome11 (Build37)
Map Location 78,686,454 - 78,837,876
singlet/doubletdoublet
Overlap geneNos2, Lgals9, Ksr1
Upstream genePipox, Sez6, LOC100043518, Phf12, Dhrs13, Flot2, Eral1, BC017647, LOC100043525, Traf4, Nek8, Tlcd1, Rpl23a, Rab34, 4933404M19Rik, Supt6h, Sdf2, 2610507B11Rik, BC030499, LOC100043544, LOC100042648, Spag5, Aldoc, Pigs, Unc119, Foxn1, OTTMUSG00000000132, Slc13a2, Slc46a1, A830091I15Rik, Vtn, Og9x, AI316787, Poldip2, Tnfaip1, Ift20, Tmem97, Nlk, LOC100043570, LOC100042674, 1810009O10Rik, 1810012P15Rik
Downstream geneLOC100042697, Wsb1, Nf1, Omg, Evi2b, Evi2a, Rab11fip4, OTTMUSG00000000185, LOC432584, Utp6, ENSMUSG00000072631, Suz12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090J23.bB6Ng01-090J23.g
ACCDH902871DH902872
length1,198844
definitionDH902871|Mus musculus domesticus DNA, BAC clone: B6Ng01-090J23, 5' end.DH902872|Mus musculus domesticus DNA, BAC clone: B6Ng01-090J23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,836,666 - 78,837,876)(78,686,454 - 78,687,304)
sequence
gaattccagggctcagagctgaggcaggaagattgaaagcttgaaaccag
cctggaccacatggggaagggagatcaccatgtctccaaaacagaaaacc
tagaacaccgaatccagcttccgctcctataaaagcctgtctgtgctgac
aggctgcgtcctctcaggctggccatgaatctcagttggtagagtgcttg
gctaggatgcacagagccacgggttcagtccccatcaccagaagcatttc
agtggcacacacccgtaatctccacttagaaggtggaggcaggaggatca
cccttggctaccaagcaagctagcctgggctacatgaactcctgtctcag
aaaagaagattcgcccctggcagctgtgcttcagtttgccttctatgccc
cgccccccaccctgttcccttctctggtgcattcagtgtgtacggatgtc
tttagaaaagatcatcacagtggcatttggggacaaactagggtttcagt
ctgtccctttcccatggtcacacttatagattaagccgagtccaaaaccc
caaggtgtcagtcacctctgcctgcagtgtggtccgtggtctttcaccag
ggactctgctccatctccccaccccgcacctgaatcctgctgctccccac
tttcggacctttctcagaactgggagctgtcctctgagtcacgtgaccca
aggtggccagagtggccacttgcagggcccagaaggaaagtgacgcggag
gctctggagttgcctccgcctgcctcttgtccccccctgtttccttcctg
ccgaaacccctcctctccccccaccccacaggggccccagctcacttccg
ttttagagtgatctgagatgccttgagagtcagaagtggagcagagggac
ctgaccttcagtgagaggcttgtaactttggggattgccatagagaccca
ggagctctgggaaaggactgatggttcaaggctctgctcacagcctgtct
cttcagcctgacccttcccagctgtcacatctggtttgtttgtctgatgg
ttattttgttttgtgacagggacctgccatagcctcgcggcctcaaactc
acttgtagctggaagatgacccttaagctctcccttcatctctcagtctg
tggatataaggtaactacaggctcactcaatgtctgtgggtgaataag
gaattcaagccaaataaaccctttcctctccaactagctttttggtcatg
ggctttcatcacagcaatagaaaccctagccaagacaaataccatggcag
gctagaacaccagacttcatagtcagatcactgtggggaggggattgcat
cccacagcaccagttgccttgaaaccaacagtgagacttggatgcctttc
agcaaggagcctaattaaagaagcttgcaatctttcccagctgtgcttct
gggggttgggggcacgggggcaggggtgttcccaagataagcatggttcc
aagggtaaagacagactccatgtctggcccagtgttcatggggtctactc
tgaggactatgccaggaaccaaatttcctaaacccttttctaaatagcag
aagtcattgtaaaagcacactgattttacaattcctttagtcagtagata
cttattatgaaactttcttttgtcatgatcccgggcatgctgtacatgac
tatcatgctggcactcgggaggtggaggcagaaaatatgtaagataaatt
cctataggggaagttgcttgggaaagaggtacatatattggtaattttga
aagatatggtgaaatggctgtacgtaaaggattgaccaattatactcttg
gtggtaacatctcagagactttttcaagatgcaaatgttccattgtctat
gatgtcccatgtctattgaatggttaccttggtggccccaaccttcatgg
gttctctttggcctcttttgtttgtttttgttgtgaggttgtttgtatgt
ttgtttgttttttgtacaggtttctttggctgtctggacctcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_78836666_78837876
seq2: B6Ng01-090J23.b_50_1247 (reverse)

seq1  CTTATTCACACCACAGACATTGAGTGGGGCTTGGTGGGTTACATTTATAA  50
      ||||||||| |||||||||||||||| | ||  ||  |||||  |||| |
seq2  CTTATTCAC-CCACAGACATTGAGTGAGCCT--GT-AGTTAC-CTTAT-A  44

seq1  TCCCAGGACTTGAGAGATGGAGGGAGGAGTTTAA-GGTCATCCT-CAGCT  98
      |||   ||| ||||||||| ||||| ||| |||| ||||||| | |||||
seq2  TCCACAGAC-TGAGAGATGAAGGGA-GAGCTTAAGGGTCATCTTCCAGCT  92

seq1  ACACAGTGAGTTTGAGGACCGCCGAGGCTAT-GCGAGTCCCTGTCACAAA  147
      ||| ||||||||||||| ||| ||||||||| ||  ||||||||||||||
seq2  ACA-AGTGAGTTTGAGG-CCG-CGAGGCTATGGCAGGTCCCTGTCACAAA  139

seq1  ACAAAATAACCATCCAGACAAACAAAAACCAGATGTGACAGCTGGGAAGG  197
      ||||||||||||| |||||||||  |||||||||||||||||||||||||
seq2  ACAAAATAACCAT-CAGACAAAC--AAACCAGATGTGACAGCTGGGAAGG  186

seq1  GTCAGGCTGAAGAGACAGGCTGTGGAGCAGAGCC-TGGACCATCAGTCCT  246
      ||||||||||||||||||||||| |||||||||| || ||||||||||||
seq2  GTCAGGCTGAAGAGACAGGCTGT-GAGCAGAGCCTTGAACCATCAGTCCT  235

seq1  TTCCCAGAGCTTCCTGGGGTCTCTATGGCAATCCCCAAAGTTACAAGCCT  296
      |||||||||| |||| ||||||||||||||||||||||||||||||||||
seq2  TTCCCAGAGC-TCCT-GGGTCTCTATGGCAATCCCCAAAGTTACAAGCCT  283

seq1  CTCACTGAAGGTCAGGTCCCTCTGCTCCACTTCTGACTCTCAAGGCATCT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTGAAGGTCAGGTCCCTCTGCTCCACTTCTGACTCTCAAGGCATCT  333

seq1  CAGATCACTCTAAAACGGAAGTGAGCTGGGGCCCCTGTGGGGTGGGGGGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCACTCTAAAACGGAAGTGAGCTGGGGCCCCTGTGGGGTGGGGGGA  383

seq1  GAGGAGGGGTTTCGGCAGGAAGGAAACAGGGGGGGACAAGAGGCAGGCGG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGGGTTTCGGCAGGAAGGAAACAGGGGGGGACAAGAGGCAGGCGG  433

seq1  AGGCAACTCCAGAGCCTCCGCGTCACTTTCCTTCTGGGCCCTGCAAGTGG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAACTCCAGAGCCTCCGCGTCACTTTCCTTCTGGGCCCTGCAAGTGG  483

seq1  CCACTCTGGCCACCTTGGGTCACGTGACTCAGAGGACAGCTCCCAGTTCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCTGGCCACCTTGGGTCACGTGACTCAGAGGACAGCTCCCAGTTCT  533

seq1  GAGAAAGGTCCGAAAGTGGGGAGCAGCAGGATTCAGGTGCGGGGTGGGGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGGTCCGAAAGTGGGGAGCAGCAGGATTCAGGTGCGGGGTGGGGA  583

seq1  GATGGAGCAGAGTCCCTGGTGAAAGACCACGGACCACACTGCAGGCAGAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAGCAGAGTCCCTGGTGAAAGACCACGGACCACACTGCAGGCAGAG  633

seq1  GTGACTGACACCTTGGGGTTTTGGACTCGGCTTAATCTATAAGTGTGACC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTGACACCTTGGGGTTTTGGACTCGGCTTAATCTATAAGTGTGACC  683

seq1  ATGGGAAAGGGACAGACTGAAACCCTAGTTTGTCCCCAAATGCCACTGTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAAAGGGACAGACTGAAACCCTAGTTTGTCCCCAAATGCCACTGTG  733

seq1  ATGATCTTTTCTAAAGACATCCGTACACACTGAATGCACCAGAGAAGGGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCTTTTCTAAAGACATCCGTACACACTGAATGCACCAGAGAAGGGA  783

seq1  ACAGGGTGGGGGGCGGGGCATAGAAGGCAAACTGAAGCACAGCTGCCAGG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGTGGGGGGCGGGGCATAGAAGGCAAACTGAAGCACAGCTGCCAGG  833

seq1  GGCGAATCTTCTTTTCTGAGACAGGAGTTCATGTAGCCCAGGCTAGCTTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGAATCTTCTTTTCTGAGACAGGAGTTCATGTAGCCCAGGCTAGCTTG  883

seq1  CTTGGTAGCCAAGGGTGATCCTCCTGCCTCCACCTTCTAAGTGGAGATTA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTAGCCAAGGGTGATCCTCCTGCCTCCACCTTCTAAGTGGAGATTA  933

seq1  CGGGTGTGTGCCACTGAAATGCTTCTGGTGATGGGGACTGAACCCGTGGC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTGTGTGCCACTGAAATGCTTCTGGTGATGGGGACTGAACCCGTGGC  983

seq1  TCTGTGCATCCTAGCCAAGCACTCTACCAACTGAGATTCATGGCCAGCCT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGCATCCTAGCCAAGCACTCTACCAACTGAGATTCATGGCCAGCCT  1033

seq1  GAGAGGACGCAGCCTGTCAGCACAGACAGGCTTTTATAGGAGCGGAAGCT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGACGCAGCCTGTCAGCACAGACAGGCTTTTATAGGAGCGGAAGCT  1083

seq1  GGATTCGGTGTTCTAGGTTTTCTGTTTTGGAGACATGGTGATCTCCCTTC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCGGTGTTCTAGGTTTTCTGTTTTGGAGACATGGTGATCTCCCTTC  1133

seq1  CCCATGTGGTCCAGGCTGGTTTCAAGCTTTCAATCTTCCTGCCTCAGCTC  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGTGGTCCAGGCTGGTTTCAAGCTTTCAATCTTCCTGCCTCAGCTC  1183

seq1  TGAGCCCTGGAATTC  1211
      |||||||||||||||
seq2  TGAGCCCTGGAATTC  1198

seq1: chr11_78686454_78687304
seq2: B6Ng01-090J23.g_70_913

seq1  GAATTCAAGCCAAATAAACCCTTTCCTCTCCAACTAGCTTTTTGGTCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGCCAAATAAACCCTTTCCTCTCCAACTAGCTTTTTGGTCATG  50

seq1  GGCTTTCATCACAGCAATAGAAACCCTAGCCAAGACAAATACCATGGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTCATCACAGCAATAGAAACCCTAGCCAAGACAAATACCATGGCAG  100

seq1  GCTAGAACACCAGACTTCATAGTCAGATCACTGTGGGGAGGGGATTGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAACACCAGACTTCATAGTCAGATCACTGTGGGGAGGGGATTGCAT  150

seq1  CCCACAGCACCAGTTGCCTTGAAACCAACAGTGAGACTTGGATGCCTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAGCACCAGTTGCCTTGAAACCAACAGTGAGACTTGGATGCCTTTC  200

seq1  AGCAAGGAGCCTAATTAAAGAAGCTTGCAATCTTTCCCAGCTGTGCTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGGAGCCTAATTAAAGAAGCTTGCAATCTTTCCCAGCTGTGCTTCT  250

seq1  GGGGGTTGGGGGCACGGGGGCAGGGGTGTTCCCAAGATAAGCATGGTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTTGGGGGCACGGGGGCAGGGGTGTTCCCAAGATAAGCATGGTTCC  300

seq1  AAGGGTAAAGACAGACTCCATGTCTGGCCCAGTGTTCATGGGGTCTACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTAAAGACAGACTCCATGTCTGGCCCAGTGTTCATGGGGTCTACTC  350

seq1  TGAGGACTATGCCAGGAACCAAATTTCCTAAACCCTTTTCTAAATAGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGACTATGCCAGGAACCAAATTTCCTAAACCCTTTTCTAAATAGCAG  400

seq1  AAGTCATTGTAAAAGCACACTGATTTTACAATTCCTTTAGTCAGTAGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCATTGTAAAAGCACACTGATTTTACAATTCCTTTAGTCAGTAGATA  450

seq1  CTTATTATGAAACTTTCTTTTGTCATGATCCCGGGCATGCTGTACATGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTATGAAACTTTCTTTTGTCATGATCCCGGGCATGCTGTACATGAC  500

seq1  TATCATGCTGGCACTCGGGAGGTGGAGGCAGAAAATATGTAAGATAAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATGCTGGCACTCGGGAGGTGGAGGCAGAAAATATGTAAGATAAATT  550

seq1  CCTATAGGGGAAGTTGCTTGGGAAAGAGGTACATATATTGGTAATTTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATAGGGGAAGTTGCTTGGGAAAGAGGTACATATATTGGTAATTTTGA  600

seq1  AAGATATGGTGAAATGGCTGTACGTAAAGGATTGACCAATTATACTCTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATATGGTGAAATGGCTGTACGTAAAGGATTGACCAATTATACTCTTG  650

seq1  GTGGTAACATCTCAGAGAC-TTTTCAAGATGCAAATGTTCCATTGTCTAT  699
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GTGGTAACATCTCAGAGACTTTTTCAAGATGCAAATGTTCCATTGTCTAT  700

seq1  GATGTCCCATGTCTATTGAATGGTTACCTTGGTGGCCCCAACCTTCAATG  749
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GATGTCCCATGTCTATTGAATGGTTACCTTGGTGGCCCCAACCTTC-ATG  749

seq1  GGTTCTCTTTGGCCTTCTTTTGTTTGTTTTTGTTGTGAGGTTGTTTGTTT  799
      |||||||||||||| ||||||||||||||||||||||||||||||||| |
seq2  GGTTCTCTTTGGCC-TCTTTTGTTTGTTTTTGTTGTGAGGTTGTTTGTAT  798

seq1  GTTTTGTTTTGTTTTTTTGAGACAGGGTTTCTTTGGCTGTCCTGGAACTC  849
      ||||   ||||||||||  | |   ||||||||||||||| ||||| |||
seq2  GTTT--GTTTGTTTTTTGTACA---GGTTTCTTTGGCTGT-CTGGACCTC  842

seq1  TA  851
      ||
seq2  TA  844