BAC Information

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BAC

Clone NameB6Ng01-092K09
Chromosome11 (Build37)
Map Location 29,214,787 - 29,321,669
singlet/doubletdoublet
Overlap geneLOC672637, LOC100042985, A430106J12Rik
Upstream geneEG626571, Ccdc85a, Efemp1, LOC382504, Pnpt1, A630052C17Rik, Smek2, LOC100042972, Ccdc104
Downstream gene2010316F05Rik, LOC100042990, Mtif2, Rps27a, 1700034F02Rik, LOC628830, LOC666403, Rtn4, C230094A16Rik, 4931440F15Rik, Spnb2, EG666427, LOC666432
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092K09.bB6Ng01-092K09.g
ACCDH904352DH904353
length1,135836
definitionDH904352|Mus musculus domesticus DNA, BAC clone: B6Ng01-092K09, 5' end.DH904353|Mus musculus domesticus DNA, BAC clone: B6Ng01-092K09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,320,528 - 29,321,669)(29,214,787 - 29,215,633)
sequence
gaattcctacccttaagtttataaaaactttccttgaagaggatagaaag
tgaaacaaaagtacaaaatcattaaatcgaagactatatcttgaaatatg
aaaatttagtccttaagttaactttgataataataataatatgaaacaat
aagctagttgctgtgatggtggcacatgcctgcaaccctaaaacttgagg
tcagaggactgctgtaaacgttgaaggcaaacgtcctattcaaaagagtt
cgaagtttaatggtatacctttaacccagcagttggcagaggcaggcaga
gctctgagttctgtagactgcatggtctatatagtgagtttcaggagtca
atgttaggtctgtccactcatccagctatccatccatccatccatccatc
catccatccatccatctgggaggtaaaaagcttaaatatttactgccatg
aataaagctttattgcattattaccaggcctctagaatttcacctagctc
taaagataatcatgatcaaagaaataagaacctgattaaagaagtgggaa
caagaatatggaaatgagggctggagaaatggctcagtagtcaagagcac
tggctgttctttcagaggtcctgagtttaattcccaacaaccacaaggta
gctcacaaccatctatcatgagatctgatgccttcttctggtgtgtagac
atgcatgcatacatacatacatacatacatacatacatacatagtttttc
tttaagaaagaatatgggaacgaacacaaaataaactttgactttactaa
ggatcgtaaaacagggaaaggataagatgtacacaaaattgataagagat
ttaaacacacctataaatttatgaaaaagtaaacagtaatatatttgaaa
gagaaacttttcaaaaatggggcatttgtttgaaaaatattgactgctca
ttatttgtcatttattattctaagcaatatacagcagccagcagtatttg
ctctgagggatcttacattttagtaagagtcaacagaaaataatgaacaa
gtgctttagtcatgaagactaaagaataaaagtaaatcagagggctgaga
attgatcagagatgaaagaaatgtgctgttaattc
gaattccatgttgttactaattttaaaaaccagcctggctttcttctgtt
aagcagtttgattgtggattacgttctttccctggcagctggtgagttgt
aaatcaattaatgaacaagcatttatcaagcacctgctgtgtgatcagtg
tcatactcagaaattcatgctgattaaattctctgtaaaacaattaggaa
atcctatcttgtctccactcctcctcacccccaattcacaggaatgcatt
ccaaaatcaaacactccattttgctgttttgagttagctacgctatggtc
tgttctgtggcatatcaataacaccctagacaattacaaattttttaagg
tagtcaaagcagttttgttcttgttcttgttttgttttgttttgttttag
ttcttctttgaaggtctgatagagttctgcactaaacccatctggtcctg
tgctttttttggttgggagactactaatgactgtttctatttctttaggg
gttgtaggacattctcacatgtaaggacattctcacaaataaataaacaa
acaaatcgatcaatcagtcaataaggatatcctcacaaacaaacacaaaa
aagaggagtggatattcccacttatattttttgctatgattctacaaatt
atacaggatgactcatattttctgtttcttctttcaataatgttgctcct
tgtagttacatttaaaaaaaaaaaaccctcttctgctgtatcttattttt
aaaactaaaggaaggtgacaaatataaaaaatttatgaaaaggagttgaa
atttaaggctagaaccatcatttcctttcttaatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_29320528_29321669
seq2: B6Ng01-092K09.b_46_1180 (reverse)

seq1  GAATTAACAGCACA-TTCTCTCATCCTCTGTATCATATCTCCAGCCCCTC  49
      |||||||||||||| |||| |||| ||||| ||||  ||| ||||||   
seq2  GAATTAACAGCACATTTCTTTCAT-CTCTG-ATCAATTCT-CAGCCC--T  45

seq1  CTGATATACTTTTA-TCTTTAGTCCTCATGACCTAAAGCACTTGTTCATT  98
      ||||| |||||||| ||||||||| |||||| |||||||||||||||| |
seq2  CTGATTTACTTTTATTCTTTAGTCTTCATGA-CTAAAGCACTTGTTCA-T  93

seq1  TATTTTCTGTTGACTCTTACTAAAATGTAAGATCCCTCAGAGCAAATACT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCTGTTGACTCTTACTAAAATGTAAGATCCCTCAGAGCAAATACT  143

seq1  GCTGGCTGCTGTATATTGCTTAGAATAATAAATGACAAATAATGAGCAGT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCTGCTGTATATTGCTTAGAATAATAAATGACAAATAATGAGCAGT  193

seq1  CAGTATTTTTCAAACAAATGCCCCAATTTTTGAAAAGTTTCTCTTTCAAA  248
      || ||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CAATATTTTTCAAACAAATGCCCC-ATTTTTGAAAAGTTTCTCTTTCAAA  242

seq1  TATATTACTGTTTTACTTTTTCATAAATTTTATAGGTGTGTTTTAAATCT  298
      |||||||||| |||||||||||||||| |||||||||||| |||||||||
seq2  TATATTACTG-TTTACTTTTTCATAAA-TTTATAGGTGTG-TTTAAATCT  289

seq1  CTTATC-AGTTTGTGTACATCTTATCCTTTCCCTGTTTTACGATCCTTAG  347
      |||||| | |||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCAATTTTGTGTACATCTTATCCTTTCCCTGTTTTACGATCCTTAG  339

seq1  TAAAGTC-AAGTTTATTTTGTGTTCGTTCCCATATTCTTTCTTAAAGAAA  396
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTCAAAGTTTATTTTGTGTTCGTTCCCATATTCTTTCTTAAAGAAA  389

seq1  AACTATGTATGTATGTATGTATGTATGTATGTATGTATGCATGCATGTCT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATGTATGTATGTATGTATGTATGTATGTATGTATGCATGCATGTCT  439

seq1  ACACACCAGAAGAAGGCATCAGATCTCATGATAGATGGTTGTGAGCTACC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACCAGAAGAAGGCATCAGATCTCATGATAGATGGTTGTGAGCTACC  489

seq1  TTGTGGTTGTTGGGAATTAAACTCAGGACCTCTGAAAGAACAGCCAGTGC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGTTGTTGGGAATTAAACTCAGGACCTCTGAAAGAACAGCCAGTGC  539

seq1  TCTTGACTACTGAGCCATTTCTCCAGCCCTCATTTCCATATTCTTGTTCC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGACTACTGAGCCATTTCTCCAGCCCTCATTTCCATATTCTTGTTCC  589

seq1  CACTTCTTTAATCAGGTTCTTATTTCTTTGATCATGATTATCTTTAGAGC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCTTTAATCAGGTTCTTATTTCTTTGATCATGATTATCTTTAGAGC  639

seq1  TAGGTGAAATTCTAGAGGCCTGGTAATAATGCAATAAAGCTTTATTCATG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGAAATTCTAGAGGCCTGGTAATAATGCAATAAAGCTTTATTCATG  689

seq1  GCAGTAAATATTTAAGCTTTTTACCTCCCAGATGGATGGATGGATGGATG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTAAATATTTAAGCTTTTTACCTCCCAGATGGATGGATGGATGGATG  739

seq1  GATGGATGGATGGATGGATAGCTGGATGAGTGGACAGACCTAACATTGAC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGATGGATGGATGGATAGCTGGATGAGTGGACAGACCTAACATTGAC  789

seq1  TCCTGAAACTCACTATATAGACCATGCAGTCTACAGAACTCAGAGCTCTG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAAACTCACTATATAGACCATGCAGTCTACAGAACTCAGAGCTCTG  839

seq1  CCTGCCTCTGCCAACTGCTGGGTTAAAGGTATACCATTAAACTTCGAACT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTCTGCCAACTGCTGGGTTAAAGGTATACCATTAAACTTCGAACT  889

seq1  CTTTTGAATAGGACGTTTGCCTTCAACGTTTACAGCAGTCCTCTGACCTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGAATAGGACGTTTGCCTTCAACGTTTACAGCAGTCCTCTGACCTC  939

seq1  AAGTTTTAGGGTTGCAGGCATGTGCCACCATCACAGCAACTAGCTTATTG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTAGGGTTGCAGGCATGTGCCACCATCACAGCAACTAGCTTATTG  989

seq1  TTTCATATTATTATTATTATCAAAGTTAACTTAAGGACTAAATTTTCATA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATATTATTATTATTATCAAAGTTAACTTAAGGACTAAATTTTCATA  1039

seq1  TTTCAAGATATAGTCTTCGATTTAATGATTTTGTACTTTTGTTTCACTTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGATATAGTCTTCGATTTAATGATTTTGTACTTTTGTTTCACTTT  1089

seq1  CTATCCTCTTCAAGGAAAGTTTTTATAAACTTAAGGGTAGGAATTC  1142
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCTCTTCAAGGAAAGTTTTTATAAACTTAAGGGTAGGAATTC  1135

seq1: chr11_29214787_29215633
seq2: B6Ng01-092K09.g_70_905

seq1  GAATTCCATGTTGTTACTAATTTTAAAAACCAGCCTGGCTTTCTTCTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGTTGTTACTAATTTTAAAAACCAGCCTGGCTTTCTTCTGTT  50

seq1  AAGCAGTTTGATTGTGGATTACGTTCTTTCCCTGGCAGCTGGTGAGTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGTTTGATTGTGGATTACGTTCTTTCCCTGGCAGCTGGTGAGTTGT  100

seq1  AAATCAATTAATGAACAAGCATTTATCAAGCACCTGCTGTGTGATCAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAATTAATGAACAAGCATTTATCAAGCACCTGCTGTGTGATCAGTG  150

seq1  TCATACTCAGAAATTCATGCTGATTAAATTCTCTGTAAAACAATTAGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACTCAGAAATTCATGCTGATTAAATTCTCTGTAAAACAATTAGGAA  200

seq1  ATCCTATCTTGTCTCCACTCCTCCTCACCCCCAATTCACAGGAATGCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTATCTTGTCTCCACTCCTCCTCACCCCCAATTCACAGGAATGCATT  250

seq1  CCAAAATCAAACACTCCATTTTGCTGTTTTGAGTTAGCTACGCTATGGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATCAAACACTCCATTTTGCTGTTTTGAGTTAGCTACGCTATGGTC  300

seq1  TGTTCTGTGGCATATCAATAACACCCTAGACAATTACAAATTTTTTAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTGTGGCATATCAATAACACCCTAGACAATTACAAATTTTTTAAGG  350

seq1  TAGTCAAAGCAGTTTTGTTCTTGTTCTTGTTTTGTTTTGTTTTGTTTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAAAGCAGTTTTGTTCTTGTTCTTGTTTTGTTTTGTTTTGTTTTAG  400

seq1  TTCTTCTTTGAAGGTCTGATAGAGTTCTGCACTAAACCCATCTGGTCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTTGAAGGTCTGATAGAGTTCTGCACTAAACCCATCTGGTCCTG  450

seq1  TGCTTTTTTTGGTTGGGAGACTACTAATGACTGTTTCTATTTCTTTAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTTTTGGTTGGGAGACTACTAATGACTGTTTCTATTTCTTTAGGG  500

seq1  GTTGTAGGACATTCTCACATGTAAGGACATTCTCACAAATAAATAAACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTAGGACATTCTCACATGTAAGGACATTCTCACAAATAAATAAACAA  550

seq1  ACAAATCGATCAATCAGTCAATAAGGATATCCTCACAAACAAACACAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATCGATCAATCAGTCAATAAGGATATCCTCACAAACAAACACAAAA  600

seq1  AAGAGGAGTGGATATTCCCACTTATATTTTTTGCTATGATTCTACAAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAGTGGATATTCCCACTTATATTTTTTGCTATGATTCTACAAATT  650

seq1  ATACAGGATGACTCAATATTTTCTGTTTCTTCTTTCAATAATGTTGCTCC  700
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ATACAGGATGACTC-ATATTTTCTGTTTCTTCTTTCAATAATGTTGCTCC  699

seq1  TTGTAGTTACATTTTAAAAAAAAAAAAACCCTCTTCTTGCTGTATCTTAT  750
      ||||||||||||||  |||||||||||||||||||| |||||||||||||
seq2  TTGTAGTTACATTT--AAAAAAAAAAAACCCTCTTC-TGCTGTATCTTAT  746

seq1  TTTTAAAAACTAAAGGAAGTGTGACAAAATAATAAAAATATTATGAAAAA  800
      |||| |||||||||||||| ||||||||   |||||||  ||||||||| 
seq2  TTTT-AAAACTAAAGGAAG-GTGACAAA--TATAAAAAATTTATGAAAA-  791

seq1  GGTAGTTGAAAAATTAAAGCTAGAACCATCATTTCCCTTCTTAATGG  847
       | ||||| ||| |||| |||||||||||||||||| ||||||||||
seq2  -GGAGTTG-AAATTTAAGGCTAGAACCATCATTTCCTTTCTTAATGG  836